Thesis (Ph.D.) -- University of Texas Southwestern Medical Center at Dallas, 2006. / Embargoed. Vita. Bibliography: 191-192.

Orientador: Paulo Mazzafera / Dissertação (mestrado) - Universidade Estadual de Campinas, Insituto de Biologia / Made available in DSpace on 2018-08-12T18:35:16Z (GMT). No. of bitstreams: 1 Andreazza_NathaliaLuiza_M.pdf: 3988387 bytes, checksum: 14f12a095b5cbb5989b090f57b961f01 (MD5) Previous issue date: 2009 / Resumo: A pilocarpina é um alcalóide imidazólico, que possui como única fonte natural spécies do gênero Pilocarpus. Este alcalóide é utilizado no tratamento de glaucoma e xerostomia. O elevado custo de folhas de Pilocarpus microphyllus no mercado internacional e conseqüente extrativismo predatório resultaram na sua inclusão na lista de espécies em extinção do IBAMA. Na busca de fontes alternativas do alcalóide conseguiu-se demonstrar que suspensões celulares desta espécie podem ser um modelo para produção e estudo da biossíntese e do transporte de pilocarpina, uma vez que produz os mesmos alcalóides encontrados nas folhas. A extração de pilocarpina a partir do meio de cultura poderá minimizar a quantidade de solventes altamente poluentes utilizados na extração deste alcalóide a partir das células, assim como, reduzir a contaminação por outros constituintes celulares. Neste contexto o presente trabalho teve como objetivo inicial determinar o local e limite de acúmulo intracelular de pilocarpina e verificar se o fornecimento externo de altas doses do alcalóide causaria toxidez às células produtoras e não produtoras de pilocarpina. Em seguida, caracterizar a absorção do alcalóide pelas células submetidas a diferentes valores de pH do meio de cultura e também identificar o mecanismo de transporte do alcalóide nas suspensões procurando definir qual é a proteína de membrana responsável pelo transporte de pilocarpina entre células e meio de cultura através do uso de inibidores de transportadores da família das ATPases e ATP-binding cassete proteins (ABC). Os testes histoquímicos e o ensaio de fracionamento celular, apesar de não conclusivos, indicaram o acúmulo de pilocarpina no vacúolo, ainda que a fração correspondente a essa organela venha misturada com o conteúdo do citoplasma. As informações sobre a localização subcelular em adição aos dados de toxicidade mostraram que pilocarpina apresenta forte citotoxicidade a cultura de plantas que não apresentam sua via de biossíntese. Culturas de P. microphyllus produtoras de pilocarpina apresentaram uma clara tolerância às altas doses do alcalóide (crescimento semelhante ao controle), mesmo que não produzindo o alcalóide em altas quantidades. Isto sugere a existência de um mecanismo de detoxificação espécifico-específico nas células aqui estudadas, que evitam a toxicidade de seus alcalóides (pilocarpina e pilosina) armazenando-os no vacúolo. Nos ensaios de absorção do alcalóide em diferentes valores de pH, observou-se que quanto maior o pH, menor a absorção do alcalóide. Nos ensaios com os inibidores de proteínas transportadoras de membrana verificou-se que as menores taxas de inibição na absorção e liberação provocadas por inibidores específicos de ATPases, a bafilomicina e pelo NH4Cl, não descartam a participação destas proteínas, mas podem indicam uma menor participação, visto que a inibição provocada pela azida sódica, também um inibidor de ATPases, foi muito intensa. Contudo, os resultados de absorção e liberação de pilocarpina mostraram intensa inibição na presença dos inibidores de ABCs o que aponta para um transporte de pilocarpina mediado por esta família de proteínas, tanto para fora como para dentro da célula. Por fim, os ensaios de cinética apontam para uma inibição do tipo competitiva gerada pelos dois inibidores utilizados, sendo que os menores valores da Constante de Inibição (Ki), encontrados para a nifedipina indicam que este composto possue uma ação inibitória mais intensa que o vanadato de sódio. / Abstract: Leaves of species from Pilocarpus genus are the only known source of pilocarpine, an imidazole alkaloid, which has been used for the treatment of glaucoma and xerostomy. Because the leaves of jaborandi are collected from plants living in the wild and the high price of pilocarpine in the international market, jaborandi was included in the endangered species list of IBAMA. Looking for alternative sources of this alkaloid, it has been shown that cell suspension cultures of Pilocarpus microphyllus can be a model to study the production of pilocarpine as well as a model to study its biosynthesis and metabolism, as it produces the same alkaloids that are found in leaves. Previous studies showed that high concentrations of nitrogen and the medium pH resulted in higher production and release of pilocarpine to the medium culture. Therefore, the objective of this study was to define the cell intracellular accumulation of pilocarpine and verify if exogenous by supplied pilocarpine to jaborandi cell suspensions is toxic to the cells. Moreover, the absorption of pilocarpine by cells treated with exogenous by supplied pilocarpine at different medium pH, as well as, the alkaloid transport mechanism through the cell membrane, using inhibitors of the protein families ATPases and ATP-Binding Cassette, were studied. The histochemical tests and the cell fractionation assays showed the accumulation of pilocarpine in the vacuole. This, together with the results of experiments that showed that pilocarpine was not toxic to jaborandi cells, suggests that vacuolar transport may be one of the mechanisms for the detoxification of pilocarpine in this species. In the absorption assays with different medium pH, the higher the pH, the lower absorption of pilocarpine by the cells. Bafilomicin and NH4Cl, which are ATPase inhibitors, were the least effective inhibitors among all the inhibitors tested for absorption and release of pilocarpine. This result does not discard the participation of these proteins in the process but indicate that they are less important, in view of the fact that inhibition by sodium azide which affects both ABC and ATPases, was very effective. The results on absorption and release of pilocarpine by the jaborandi cells showed strong inhibition by specific ABC inhibitors, which indicates an important participation of this protein family in the transport of the alkaloid through the cell membranes. Kinetics assays showed that inhibition was a reversible competitive type in the presence of nifedipine and sodium vanadate. The lowest Inhibition Constant (Ki) was observed for nifepidine. / Mestrado / Mestre em Biologia Vegetal

Charles University, Faculty of Pharmacy in Hradec Králové, Department of Biological and Medical Sciences University of Vienna, Faculty of Life Sciences, Department of Pharmacognosy Candidate: Lenka Kovářová Supervisor: Pharmdr. Miroslav Kovařík, Ph.D. Consultant: Dr. Angela Ladurner Title of the diploma thesis: Characterization of a synthetic leoligin derivative, with agonistic FXR and enhancing macrophage cholesterol efflux activity Atherosclerosis is a pathologic multifactorial process triggering the development of cardiovascular diseases, which are the leading causes of death in the western world. The initial phase of atherosclerosis is characterized by the accumulation of lipid particles, mainly low-density lipoproteins (LDL) and macrophage-derived foam cells in large arteries, leading to the gradual thickening of the vessel wall. These progressive alterations elicit plaque formation, followed by rupture, thrombosis and finally can lead to a cardiovascular event. Reverse cholesterol transport is an important preventive mechanism, which ensures removal of excessive atherogenic lipoproteins from macrophages. This efflux is facilitated by ATP binding cassette transporters, mainly ABCA1 and ABCG1 and in part by scavenger receptor B1 (SR-B1). Several nuclear receptors, including PPARγ, LXRα and LXRβ...

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<p>The aims of this thesis were to study the in vivo relevance of membrane transporters for intestinal absorption and the hepatic disposition of drugs in humans and preclinical models. Fexofenadine is a substrate for ABCB1 (P-glycoprotein) and members of the organic anion transporting polypeptide (OATP/SLCO) family. It is marginally metabolised in humans. </p><p>The influence of known inhibitors of ABCB1 and OATPs on the membrane transport and pharmacokinetics of fexofenadine was investigated in Caco-2 and porcine models and in humans. The permeability of fexofenadine remained low, even when significantly altered by the addition of an inhibitor. Using the Loc-I-Gut^® technique in vivo in humans, it was possible to see that the jejunal effective permeability of fexofenadine was unchanged when given with verapamil. However, the systemic exposure and apparent absorption rate of fexofenadine increased. This suggests that the first-pass liver extraction of fexofenadine was reduced by verapamil, probably through the inhibition of sinusoidal OATP-mediated and/or canalicular ABCB1-mediated secretion. The unchanged permeability can be explained by simultaneous inhibition of jejunal apical OATP-uptake and ABCB1-efflux, which would leave fexofenadine to be transported by passive trancellular diffusion. A Loc-I-Gut^® perfusion in the porcine model enabling blood sampling in the portal and hepatic veins and bile collection revealed increased jejunal permeability, but no subsequent verapamil-induced elevation in the systemic exposure of fexofenadine. This indicates a species-related difference in the localisation of and/or the substrate specificity of fexofenadine for the transporters involved. The absence of an effect on the first-pass liver extraction in the porcine model might be caused by the observed lower liver exposure of verapamil.</p><p>Finally, a novel intubation technique enabling dosing of fexofenadine in the jejunum, ileum and the colon showed that fexofenadine was absorbed less along the length the intestine in agreement with the properties of a low permeability drug.</p>

Mutations in the gene encoding the cystic fibrosis transmembrane conductance regulator protein (CFTR) cause cystic fibrosis (CF), the most common life-shortening genetic disease among Caucasians. Although general features of the structure of CFTR have been predicted from homology models, the conformational changes that result in channel opening and closing have yet to be resolved. We created new closed- and open-state homology models of CFTR, and performed targeted molecular dynamics simulations of the conformational transitions in a channel opening event. The simulations predict a conformational wave that starts at the nucleotide binding domains and ends with the formation of an open conduction pathway. Experimentally confirmed changes in side-chain interactions are observed in all major domains of the protein. We also identified unique-to-CFTR substitutions that may have led to channel activity in CFTR. Molecular modeling and simulations are used to compare the effects of these substitutions against a canonical ABC transporter, and suggest that gain of channel function in CFTR may have risen from loss of ATPase function at its NBDs. The models and simulation add to our understanding of the mechanism of ATP-dependent gating in this disease-relevant ion channel.

The aims of this thesis were to study the in vivo relevance of membrane transporters for intestinal absorption and the hepatic disposition of drugs in humans and preclinical models. Fexofenadine is a substrate for ABCB1 (P-glycoprotein) and members of the organic anion transporting polypeptide (OATP/SLCO) family. It is marginally metabolised in humans. The influence of known inhibitors of ABCB1 and OATPs on the membrane transport and pharmacokinetics of fexofenadine was investigated in Caco-2 and porcine models and in humans. The permeability of fexofenadine remained low, even when significantly altered by the addition of an inhibitor. Using the Loc-I-Gut® technique in vivo in humans, it was possible to see that the jejunal effective permeability of fexofenadine was unchanged when given with verapamil. However, the systemic exposure and apparent absorption rate of fexofenadine increased. This suggests that the first-pass liver extraction of fexofenadine was reduced by verapamil, probably through the inhibition of sinusoidal OATP-mediated and/or canalicular ABCB1-mediated secretion. The unchanged permeability can be explained by simultaneous inhibition of jejunal apical OATP-uptake and ABCB1-efflux, which would leave fexofenadine to be transported by passive trancellular diffusion. A Loc-I-Gut® perfusion in the porcine model enabling blood sampling in the portal and hepatic veins and bile collection revealed increased jejunal permeability, but no subsequent verapamil-induced elevation in the systemic exposure of fexofenadine. This indicates a species-related difference in the localisation of and/or the substrate specificity of fexofenadine for the transporters involved. The absence of an effect on the first-pass liver extraction in the porcine model might be caused by the observed lower liver exposure of verapamil. Finally, a novel intubation technique enabling dosing of fexofenadine in the jejunum, ileum and the colon showed that fexofenadine was absorbed less along the length the intestine in agreement with the properties of a low permeability drug.

Thesis (Ph. D.)--University of Washington, 1998. / Vita. Includes bibliographical references (leaves [100]-113).

Orientador: Andréa Balan Fernandes / Dissertação (mestrado) - Universidade Estadual de Campinas, Instituto de Biologia / Made available in DSpace on 2018-08-17T16:02:06Z (GMT). No. of bitstreams: 1 Pegos_VanessaRodrigues_M.pdf: 19133775 bytes, checksum: abcda42c9097c7e59ea61175934c2304 (MD5) Previous issue date: 2011 / Resumo: A captação de sulfato em Escherichia coli é dependente do transportador do tipo ABC (do inglês, ATP Binding Cassete), SbpCysAWD, pertencente a um regulon que envolve 26 genes. Na ausência de sulfato, a bactéria induz a expressão de dois outros transportadores ABC, o de proteínas do sistema de transporte de alcanosulfonatos (SsuABCDE) e de sulfonatos alifáticos (TauABCDE), que são responsáveis pela captação, incorporação e oxidação destes compostos a sulfito e aldeído. Embora não comprovado funcionalmente, Xanthomonas axonopodis pv. citri apresenta todos os genes envolvidos neste regulon e, neste trabalho, dando continuidade à caracterização do transportador SsuABCDE, foi realizada pela primeira vez, a caracterização estrutural e funcional das enzimas SsuD e SsuE. Análises bioquímicas associadas às análises de bioinformática e modelagem molecular, revelaram que as enzimas SsuD e SsuE constituem um sistema de dois componentes, no qual a SsuD seria a óxido-redutase responsável pela oxidação do NAD(P)H, seguida da redução da FMN. A proteína foi expressa e purificada a partir de células de E. coli com massa molecular de 39 kDa, e se organiza na forma de um octâmero, conforme demonstrado por experimentos de espalhamento de raios X a baixo ângulo e ultra-centrifugação. O modelo da estrutura tridimensional da SsuD revela uma proteína com enovelamento barril-TIM, com conservação de resíduos que permitem a oligomerização e a interação com NAD(P)H, mas não com flavina. Ensaios enzimáticos mostraram que a SsuD liga NADP(Pbp) com alta afinidade (0,21 µM) e é capaz de oxidá-lo conforme os parâmetros cinéticos de Km: 0.1877 µM -1; Kcat: 7,192 s-1; Vmáx: 0.7911 µM/min; Kcat/Km: 3,8 x 107 m-1S-1. Ainda, foram obtidos cristais da SsuD em diferentes condições as quais estão em fase de refinamento. As análises de bioinformática da SsuE sugerem que ela seja a óxido-redutase do sistema. O trabalho ainda mostra a caracterização da proteína Pbp de X. axonopodis, do suposto sistema de transporte de fosfonatos. A Pbp foi expressa com massa molecular de 33 kDa, e as análises espectroscópicas revelaram alterações conformacionais na estrutura secundária na presença de fosfonatos e fosfato, bem como aumentada estabilidade térmica na presença de espermidina, usada nos ensaios de cristalização. Cristais foram obtidos em diferentes condições e devem ser usados para os testes de difração. Os resultados apresentados neste trabalho revelam dados de proteínas e sistemas de X. axonopodis ainda não estudados e serão importantes para direcionar futuros estudos sobre a função destas na bactéria, tanto em condições laboratoriais, como em testes in vivo, durante infecção na planta / Abstract: Sulfur uptake in Escherichia coli is dependent of the ABC transporter SbpCysAWD (ATP Binding Cassete), which belongs to a regulon with 26 genes. In the sulfate absence, the bacteria induces the expression of two other ABC transporters, for alkanesulfonates (SsuABCDE) and aliphatic sulfonates (TauABCDE), which are responsible for the uptake and oxidation of these compounds to sulfite and aldehyde. Although its functionality has been not showed, Xanthomonas axonopodis pv. citri has all the genes involved in this regulon, including the alkanesulfonate transporter and enzymes. In order to continue the characterization of this transport, this work shows for the first time, the structural and functional characterization of the proteins SsuD and SsuE. Biochemical analyses associated to the bioinformatics and molecular modeling tools revealed that the SsuD and SsuE form a two-components system, where SsuD is the oxidoreductase responsible for the NAD(P)H oxidation followed by the FMN reduction. The protein was expressed and purified from E. coli cells with a molecular mass of the 39 kDa and it is organized in a octamer, such was demonstrated by the small angle scattering X-ray and ultracentrifugation assays. The tri-dimensional model of SsuD reveals a TIM barrel folding and conservation of residues that allow the oligomerization and NADP interaction. Enzymatic assays showed a high affinity binding of SsuD and NADP (0,21 µM) and that the protein was able to obtain the cinetic parameters, such as Km: 0.1877µM -1; Kcat: 7,192 s-1; Vmáx: 0.7911 µM/min; Kcat/Km: 3,8x 10-7 m 1S-1. Indeed, SsuD crystals were obtained in different conditions. The work still shows the charactrization of the Pbp protein, from X. axonopodis, believed to be the fosfonate/fosfate binding protein. Pbp was expressed with a molecular mass of 33 kDa, and spectroscopic analyses revealed conformational changes at the secondary structure content in presence of fosfonates, as well as an increased thermal stability in presence of spermidine, which was used for the crystallization trials. Crystals were obtained but still not tested. All results presented in this work can bring some light to the strategies that X. axonopodis uses for growth and infection and they will direct our studies for laboratorial and in vivo analyses / Mestrado / Genetica de Microorganismos / Mestre em Genética e Biologia Molecular