In a multiuser system, several signals are transmitted simultaneously within the same frequency band. This can result in significant improvements both in spectral efficiency and system capacity. However, a detrimental effect of the shared transmissions (both in time and bandwidth), is that the signal received at the base station (BS) or access point (AP) suffers from cochannel interference (CCI) and inter-symbol interference (ISI). This situation presents challenges to receiver design. To combat the destructive nature of multipath fading, a receiver often employs multiple antennas to collect the faded superimposed versions of the transmitted signals. The multiple signals are combined and processed in such a way that the effects of CCI and ISI are minimized and the desired information is reliably recovered. The situation is even more challenging when the system is operating under overload, i.e. when there are fewer receive antennas than there are transmitted signals. Multiuser detection (MUD) is used to simultaneously estimate the information sent by the transmitters. To do this, the receiver exploits differences among the cochannel signals (through unique spatial signatures in this case). We consider a cochannel communication system where multiple transmitted signals arrive at a receiver (equipped with multiple receive antennas) after propagating through a Rayleigh fading channel. It is assumed that the receiver is operating in an overloaded scenario. For such systems, an optimum maximum a posterior probability (MAP) detector estimates the transmitted signal by maximizing the probability of correct decision. The MAP detector reduces to the maximum likelihood (ML) detector when all the transmitted signals are equiprobable. The computational complexity of both MAP and ML detectors increases exponentially with the number of transmitted signals and the channel memory. For large systems suffering severe CCI and ISI, this is clearly not a good choice for real-time implementation due to the associated computational expenses. The main factors that influence the complexity of MAP / ML detection are: (i) the number of transmitted signals (or equivalently the number of users sharing the system resources), (ii) modulation alphabet size, and (iii) length of the channel memory. On the other hand, linear detection approaches fail to offer acceptable performance while other nonlinear sub-optimum approaches incur high computational costs for reasonably improved system performance and exhibit an irreducible error-floor at medium to high signal to noise ratio (SNR) values. We develop receiver signal processing techniques for the frequency-flat fading channel (where all the multipaths of the transmitted signal arrive at the receiver within a symbol period). We develop an ant colony optimization (ACO) assisted soft iterative detection approach for binary phase-shift keying (BPSK) modulated signals which employs a simplified MAP criteria to extract the most probable signals from the search space. The structure of the receiver is such that it can continue operating under overloaded conditions. The technique achieves near maximum likelihood (ML) performance in critically loaded cases using much lower complexity. For the challenging case of overload it still offers performance close to ML at low to moderate SNR values. Second, an integrated framework comprising of ACO metaheuristic and a recursively defined ML search criteria is developed to handle multilevel modulations. The proposed receiver is capable of achieving near-ML performance for the considered system with significant savings in computational complexity. The receiver framework is independent of the system loading condition, and therefore it remains suitable for overloaded scenarios. Due to the branch and bound nature of the algorithm, an exact expression for the complexity cannot be determined. Instead, an upper bound on computational complexity is developed.

In this thesis we consider solution approaches for the index tacking problem, in which we aim to reproduces the performance of a market index without purchasing all of the stocks that constitute the index. We solve the problem using three different solution approaches: Mixed Integer Programming (MIP), Genetic Algorithms (GAs), and Ant-colony Optimization (ACO) Algorithm by limiting the number of stocks that can be held. Each index is also assigned with different cardinalities to examine the change to the solution values. All of the solution approaches are tested by considering eight market indices. The smallest data set only consists of 31 stocks whereas the largest data set includes over 2000 stocks. The computational results from the MIP are used as the benchmark to measure the performance of the other solution approaches. The Computational results are presented for different solution approaches and conclusions are given. Finally, we implement post analysis and investigate the best tracking portfolios achieved from the three solution approaches. We summarise the findings of the investigation, and in turn, we further improve some of the algorithms. As the formulations of these problems are mixed-integer linear programs, we use the solver ‘Cplex’ to solve the problems. All of the programming is coded in AMPL.

With the rapid growth of data and computational needs, distributed systems and computational Grids are gaining more and more attention. Grids are playing an important and growing role in today networks. The huge amount of computations a Grid can fulfill in a specificc time cannot be done by the best super computers. However, Grid performance can still be improved by making sure all the resources available in the Grid are utilized by a good load balancing algorithm. The purpose of such algorithms is to make sure all nodes are equally involved in Grid computations. This research proposes two new distributed swarm intelligence inspired load balancing algorithms. One is based on ant colony optimization and is called AntZ, the other one is based on particle swarm optimization and is called ParticleZ. Distributed load balancing does not incorporate a single point of failure in the system. In the AntZ algorithm, an ant is invoked in response to submitting a job to the Grid and this ant surfs the network to find the best resource to deliver the job to. In the ParticleZ algorithm, each node plays a role as a particle and moves toward other particles by sharing its workload among them. We will be simulating our proposed approaches using a Grid simulation toolkit (GridSim) dedicated to Grid simulations. The performance of the algorithms will be evaluated using several performance criteria (e.g. makespan and load balancing level). A comparison of our proposed approaches with a classical approach called State Broadcast Algorithm and two random approaches will also be provided. Experimental results show the proposed algorithms (AntZ and ParticleZ) can perform very well in a Grid environment. In particular, the use of particle swarm optimization, which has not been addressed in the literature, can yield better performance results in many scenarios than the ant colony approach.

With the rapid growth of data and computational needs, distributed systems and computational Grids are gaining more and more attention. Grids are playing an important and growing role in today networks. The huge amount of computations a Grid can fulfill in a specificc time cannot be done by the best super computers. However, Grid performance can still be improved by making sure all the resources available in the Grid are utilized by a good load balancing algorithm. The purpose of such algorithms is to make sure all nodes are equally involved in Grid computations. This research proposes two new distributed swarm intelligence inspired load balancing algorithms. One is based on ant colony optimization and is called AntZ, the other one is based on particle swarm optimization and is called ParticleZ. Distributed load balancing does not incorporate a single point of failure in the system. In the AntZ algorithm, an ant is invoked in response to submitting a job to the Grid and this ant surfs the network to find the best resource to deliver the job to. In the ParticleZ algorithm, each node plays a role as a particle and moves toward other particles by sharing its workload among them. We will be simulating our proposed approaches using a Grid simulation toolkit (GridSim) dedicated to Grid simulations. The performance of the algorithms will be evaluated using several performance criteria (e.g. makespan and load balancing level). A comparison of our proposed approaches with a classical approach called State Broadcast Algorithm and two random approaches will also be provided. Experimental results show the proposed algorithms (AntZ and ParticleZ) can perform very well in a Grid environment. In particular, the use of particle swarm optimization, which has not been addressed in the literature, can yield better performance results in many scenarios than the ant colony approach.

Previous research on DNA computing has shown that DNA algorithms are useful to solve some combinatorial problems, such as the Hamiltonian path problem and the traveling salesman problem. The basic concept implicit in previous DNA algorithms is the brute force method. That is, all possible solutions are created initially, then inappropriate solutions are eliminated, and finally the remaining solutions are correct or the best ones. However, correct solutions may be destroyed while the procedure is executed. In order to avoid such an error, we recommend combining the conventional concepts of DNA computing with a heuristic optimization method and apply the new approach to design strategies. In this thesis, we present a DNA algorithm based on ant colony optimization (ACO) for solving the traveling salesman problem (TSP). Our method manipulates DNA strands of candidate solutions initially. Even if the correct solutions are destroyed during the process of filtering out, the remaining solutions can be reconstructed and correct solutions can be reformed. After filtering out inappropriate solutions, we employ control of melting temperature to amplify the surviving DNA strings proportionally. The product is used as the input and the iteration is performed repeatedly. Accordingly, the concentration of correct solutions will be increased. Our results agree with that obtained by conventional ant colony optimization algorithms and are better than that obtained by genetic algorithms. The same idea can be applied to design methods for solving other combinatorial problems with DNA computing.

To realize efficient parallel processing, which is one of effective methods that deal with computing intensive applications, the technology of solving the problems of task matching and scheduling becomes extremely important. In this thesis, an Ant Colony Optimization (ACO) approach is employed for allocating task graphs onto a heterogeneous computing system. The approach uses a new state transition rule to reduce the time needed for finding a satisfactory solution. And a local search procedure is designed to improve the obtained solution. Furthermore, by applying the Taguchi Method in the technology of Quality Engineering, and further utilizing the Orthogonal Array (OA) to reduce the number of experiments and find the optimal combination of parameters, which allows the Ant Colony Algorithm to find solutions more efficient. The proposed algorithm is compared with the genetic-algorithm-based approach and the dynamic priority scheduling (DPS) heuristic. Experimental results show that the ACO approach outperforms two computing approaches in solving the task matching and scheduling problem.

Functional expression of a protein in life form is decided by its tertiary structure. In the past few decades, a significant number of studies have been made on this subject. However, the folding rules of a protein still stay unsolved. The challenge is to predict the three-dimensional tertiary structure of a protein from its primary amino acid sequence. We propose a hybrid method combining homology model and the folding approach to predict protein three-dimensional structure from amino acid sequence. The previous researches on folding problem mostly take the HP (Hydrophobic-Polar) model, which is not able to simulate the native structure of proteins. We use a more exquisite model, the sliced lattice model, to approximate the native forms. Another essential factor influencing protein structures is disulfide bonds, which are ignored in the HP model. We use the ant colony optimization algorithm to approximate the folding problem with the constrained disulfide bond on the sliced lattice HP model. We show that the prediction results are better than previous methods by the measurement of RMSD(Root Mean Square Deviation).

The Human Genome Project completed in 2003 and the draft of human genome sequences were also yielded. It has been known that any two human gnomes are almost identical, and only very little difference makes human diversities. Single nucleotide polymorphism (SNP) means that a single-base nucleotide changes in DNA. A SNP sequence from one of a pair of chromosomes is called a haplotype. In this thesis, we study how to reconstruct a pair of chromosomes from a given set of fragments obtained by DNA sequencing in an individual. We define a new problem, the chromosome pair assembly problem, for the chromosome reconstruction. The goal of the problem is to find a pair of sequences such that the pair of output sequences have the minimum mismatch with the input fragments and their lengths are minimum. We first transform the problem instance into a directed multigraph. And then we propose an efficient algorithm to solve the problem. We apply the ACO algorithm to optimize the ordering of input fragments and use dynamic programming to determine SNP sites. After the chromosome pair is reconstructed, the two haplotypes can also be determined. We perform our algorithm on some artificial test data. The experiments show that our results are near the optimal solutions of the test data.

The k-LCS problem is to find the longest common subsequence (LCS) of k input sequences. It is difficult while the number of input sequences is large. In the past, researchers focused on finding the LCS of two sequences (2-LCS). However, there is no good algorithm for finding the optimal solution of k-LCS up to now. For solving the k-LCS problem, in this thesis, we first propose a mixed algorithm, which is a combination of a heuristic algorithm, genetic algorithm (GA) and ant colony optimization (ACO) algorithm. Then, we propose an enhanced ACO (EACO) algorithm, composed of the heuristic algorithm and matching pair algorithm (MPA). In our experiments, we compare our algorithms with expansion algorithm, best next for maximal available symbol algorithm, GA and ACO algorithm. The experimental results on several sets of DNA and protein sequences show that our EACO algorithm outperforms other algorithms in the lengths of solutions.

Havlík, M. Ant Colony Optimization: Implementation and testing of bio-inspired optimization method. Diploma thesis. Brno, 2015. This thesis deals with the implementation and testing of algorithm Ant Colony Optimization as a representative of the family of bio-inspired opti-mization methods. A given algorithm is described, analyzed and subsequently put into context with the problems which can be solved. Based on the collec-ted information is designed implementation that solves the Traveling sale-sman problem. Implementation contains graphical user interface to track the algorithm. Implementation is further optimized using parallel programming and other methods. Finally the implementation compared and summarized results.