Gold nanoparticles exhibit remarkable optical properties and could prove useful in sensitive biosensing applications. Upon illumination gold nanoparticles produce localized surface plasmons, which influence nearby fluorophores and an enhancement in their fluorescence intensity can be observed. This property makes gold nanoparticles attractive for enhancing optical signals. In this project gold nanoparticles were functionalized with an antibody and immobilized to the surface of an existing biochip platform based on fluorescence. The aim was to investigate the possibility of obtaining an increased fluorescence signal from the gold nanoparticles. Two different conjugation procedures were investigated, direct physisorption and covalent attachment of the antibodies to the particles. Activity of bound antibodies was confirmed in both cases. The on-chip fluorescence intensity produced by the different conjugates was monitored by use a specialized fluorescence reader designed for point-of-care use. AFM and SEM were used to determine the surface concentration of particles. A correlation between the produced fluorescence intensity and the surface concentration could be seen.

The overall objective of this PhD thesis research is to understand and control phase separation in mixed perfluorinated fatty acid-phospholipid surfactant systems that have applications as pulmonary surfactant (PS) mixtures, with an ultimate view of controlling film composition, morphology and mechanical properties. In this context the interaction between perfluorooctadecanoic acid (C18F), 1,2-dipalmitoyl-sn-glycero-3-phosphocholine (DPPC), the major component of native PS extract, and 1,2-dipalmitoyl-sn-glycero-3-phosphoglycerol (DPPG) has been explored in Langmuir monolayers and Langmuir–Blodgett (LB) films using a combination of atomic force microscopy (AFM), fluorescence microscopy (FM) and Brewster angle microscopy (BAM) measurements. Thermodynamic and morphological studies of binary and ternary mixed films made of C18F, DPPC and DPPG indicated that both the phospholipids and C18F were miscible over a wide range of compositions. The mixed phospholipid-C18F films contained multimolecular aggregates that were highly enriched in the phospholipids. Furthermore, it was found that the magnitude of the DPPC-C18F interaction could be modulated by altering the concentration of sodium ions in the underlying subphase. Using a highly simplified lung mimic fluid (pH 7.4, 150mM NaCl), DPPC and C18F became fully immiscible. Moreover, the performance characteristics of the mixed films demonstrated the usefulness of C18F as an additive for PS formulations. The effectiveness of a PS protein mimicking peptide was evaluated against DPPC to allow comparison with previous measurements of DPPC-C18F mixed system. The mixing thermodynamics of the peptide and DPPC in Langmuir monolayer implied a repulsive interaction between the film components. The hysteresis response of the mixed monolayer films indicated that the lipid-protein mixture improved the re-spreading of DPPC films. Moreover, molecular-level organization of the mixed films explored by both FM and BAM confirmed the formation of liquid-expanded DPPC domains in the presence of minute amount of the peptide. In order to obtain a thorough understanding of the effect of the deposition process and surfactant tail polarities on the interfacial behavior of perfluorocarbon-hydrocarbon mixed monolayer films, both BAM and AFM measurements of arachidic acid (C20) with perfluorotetradecanoic acid (C14F) and palmitic acid (C16) with C18F mixed monolayer were performed. These measurements revealed that film morphology was minimally perturbed upon its deposition onto solid substrates. Coarse grained molecular dynamics (MD) simulations of films comprised of DPPC molecules with tails of various polarities suggested that the phase separation between the monolayer components could be controlled by varying surfactant tail polarities.

The work of this thesis comprises extensive Noncontact Atomic Force Microscopy (NC-AFM) characterization of clean metal-oxide (YSZ(100)/(111) and MgO(100)) and graphitic (HOPG) supports as templates for the novel, photochemically induced nucleation of cobalt oxide nanostructures, particularly Cobalt (III) Oxide. The nanostructure-support surfaces were also studied by X-ray Photoelectron Spectroscopy (XPS) to verify the nature of the supported cobalt oxide and to corroborate the surface topographic and phase NC-AFM data. Heteroepitaxial growth of Co2O3 nanostructures proves to exhibit a variety of different growth modes based on the structure of the support surface. On this basis, single-crystal support surfaces ranging from nonpolar to polar and atomically flat to highly defective and reactive were chosen, again, yielding numerous substrate-nanostructure interactions that could be probed by high-performance surface science techniques.

The phase separation of mixed Langmuir-Blodgett (LB) monolayers was investigated using a combination of atomic force microscopy (AFM), X-ray photoelectron emission microscopy (X-PEEM) and confocal fluorescent microscopy measurements. Shapes of phase-separated domains that formed on solid substrate surfaces depended on a competition between line tension and dipole-dipole interactions. In the mixed LB film of arachidic acid (C19H39COOH) (C20) and perfluorotetradecanoic acid (C13F27COOH) (F14), the components phase separated into elevated hexagonal domains of C20 surrounded by a continuous domain primarily consisting of F14. The underlying molecular arrangement of C20 was found to be an oblique packing. The domains in this system grew via Ostwald ripening and the kinetics of their growth was modeled by twodimensional LifshitzSlyozov equation. In the stearic acid (C17H35COOH) (C18) and F14 mixed films, the C18 domains formed a linear pattern where the F14 molecules filled the areas in between the lines occupied by C18. For the mixed film of palmitic acid (C15H31COOH) (C16) and perfluorooctadecanoic acid (C17F35COOH) (F18), the surfactants phaseseparated into elevated hexagonal domains with hairy extensions radiating from them. These domains were composed of F18 and surrounded by C16. Ostwald ripening was found to be the mechanism of domain growth. Phase separation was controlled by different forces such as line tension and dipole interactions, as well as the diffusion of the molecules, solubility of the surfactant in the sub-phase, temperature and surface pressure. Simple mechanisms regarding phase separation and pattern formation were discussed in these mixed systems. It was observed that all fatty acid / F14 systems in this study were immiscible at all molar fractions examined. The fatty acid / F18 systems were immiscible at short chains of fatty acids (myristic acid (C13H27COOH) C14, C16, C18), whereas at longer fatty acid chains (C20, C22 behenic acid (C21H43COOH)) the components of the mixed system became miscible. When perfluorocarboxylic acid chain combined with fatty acids, the domains changed from large hexagonal domains into narrow lines as the fatty acid chain decreased in length.

One the most daunting technical challenges in the realization of biosensors is functionalizing transducing surfaces for the detection of biomolecules. Functionalization is defined as the formation of a bio-compatible interface on the transducing surfaces of bio-chemical sensors for immobilizing and subsequent sensing of biomolecules. The kinetics of functionalization reactions is a particularly important issue, since conventional functionalization protocols are associated with lengthy process times, from hours to days. The objective of this thesis is the improvement of the functionalization protocols and their kinetics for biosensing applications. This objective is realized via modeling and experimental verification of novel functionalization techniques in microfluidic environments. The improved functionalization protocols using microfluidic environments enable in-situ functionalization, which reduces the processing times and the amount of reagents consumed, compared to conventional methods. The functionalization is performed using self-assembled monolayers (SAMs) of thiols. The thiols are organic compounds with a sulphur group that assists in the chemisorption of the thiol to the surface of metals like gold. The two reactions in the functionalization process examined in this thesis are the SAM formation and the SAM/probe molecule conjugation. SAM/probe molecule conjugation is the chemical treatment of the SAM followed by the binding of the probe molecule to the SAM. In general, the probe molecule is selective in binding with a given biomolecule, called the target molecule. Within this thesis, the probe molecule is an antibody and the target molecule is an antigen. The kinetics of the reaction between the probe (antibody) and the target biomolecule (antigen) is also studied. The reaction between an antigen and its antibody is called the immunoreaction. The biosensing technique that utilizes the immunoreaction is immunoassay. A numerical model is constructed using the finite element method (FEM), and is used to study the kinetics of the functionalization reactions. The aim of the kinetic studies is to achieve both minimal process times and reagents consumption. The impact of several important parameters on the kinetics of the reactions is investigated, and the trends observed are explained using kinetic descriptive dimensionless numbers, such as the Damköhler number and the Peclet number. Careful numerical modeling of the reactions contributes to a number of findings. A considerably faster than conventional SAM formation protocol is predicted. This fast-SAM protocol is capable of reducing the process times from the conventional 24-hours to 15 minutes. The numerical simulations also predict that conventional conjugation protocols result in the overexposure of the SAM and the probe molecule to the conjugation reagents. This overexposure consequently lowers conjugation efficiencies. The immunoreaction kinetics of a 70 kilo-Dalton heat shock protein (HSP70) with its antibody in a hypothetical microchannel is also investigated through the FEM simulations. Optimal reaction conditions are determined, including the flow velocity and the surface concentration of the immobilized probes (antibodies). Based on the numerical results and a series of experimental studies, the fast-SAM protocol application is successfully confirmed. Moreover, the optimum reagent concentration for a given one- hour conjugation process time is determined. This functionalization protocol is successfully applied to immobilize the HSP70 antibody on gold surfaces. The use of the fast-SAM protocol and the predicted optimum conjugation conditions result in binding of the HSP70 antibody on gold, with the same or superior immobilization quality, compared to the conventional protocols. Upon implementation of a 70 μm.s^(-1) flow velocity, the reaction is observed to complete in around 30-35 minutes, which is close to the numerically predicted 30 minutes and 16 seconds. This immunoreaction time is considerably less than conventional 4-12 hour processes. The modified in-situ functionalization techniques achieved here are promising for substantially reducing the preparation times and improving the performance of biosensors, in general, and immunoassays, in particular.

Adhesion between different objects is happening everywhere. Without it, simple procedures like walking or holding something in a hand or attaching a postage stamp would be impossible. The life itself depends on adhesion on all levels, starting from the interactions between the living cells. Adhesion between two substrates is a complex phenomenon, which at present is still not well understood. There are several factors determining the strength of adhesion: (i) molecular interactions at interface, (ii) mechanical properties of adhesive, and (iii) area of contact between adhesive and probing surface. Two surfaces are tacky when they possess the right balance between these factors. Controlling the adhesion of materials is important in many fields ranging from industrial purposes to biomedical applications and everyday usage. There is a demand for “smart” materials with integrated functionalities that make them responsive, switchable, biocompatible, anti-bacterial, more energy efficient, or autonomous. In particular, materials for such cutting-edge applications like cell culture, drug delivery, tissue engineering, biosensors, anti/biofouling, microfluidics, climbing robots, sport equipment and many others require adjustable/tuneable adhesive properties. Many efforts were directed towards fabrication of materials with either weak or strong adhesion depending on the field of application. However, design of “smart” surfaces with reversibly switchable/controllable adhesion is still a highly challenging task. Therefore, the thesis aims on design of smart polymeric materials with responsive / adaptive adhesion properties. For this, fabrication and investigation of two types of switchable polymer layers based on stimuli-responsive polymer brushes will be performed. The first group is dealing with thermoresponsive polymer brushes: poly-(N-isopropylacrylamide) and two types of biocompatible polyethylene glycol-based systems. These polymer layers undergo phase transition below and above LCST between hydrophilic and hydrophobic states. The second part of the work is related to solvent-responsive comb-like and block copolymer brushes consisted of hydrophilic PEG and hydrophobic PDMS biocompatible and biodegradable polymers.

Pervaporation (PV), a non-porous membrane separation process, is gaining considerable attention for solvent separation in a variety of industries ranging from chemical to food and pharmaceutical to petrochemicals. The most successful application has been the dehydration of organic liquids, for which hydrophilic membranes are used. However, during pervaporation, excessive affinity of water towards hydrophilic membranes leads to undesirable swelling (water absorption) of the membrane matrix. To control swelling, often hydrophilic membranes are crosslinked to modify physicochemical (surface and bulk) properties. Since the transport of species in pervaporation is governed by sorption (affected by surface and bulk properties) and diffusion (affected by bulk properties), it is essential to study the effect of crosslinking on the surface and bulk physicochemical properties and their effects on separation performance. This thesis focuses on the effect of crosslinking on the physicochemical properties (e.g., crystallinity, hydrophilicity, surface roughness) of hydrophilic polymeric membranes and their dehydration performance alcohol-water mixtures. Poly(vinyl alcohol), PVA was used as the base polymer to prepare membranes with various morphologies such as homogeneous, blended (with Chitosan, CS) and composite (with poly(sulfone), PSf) structures. Before applying the crosslinked membranes for the PV dehydration of alcohols, the physicochemical characterization were carried out using Attenuated Total Reflection-Fourier Transform Infrared Spectroscopy (ATR-FTIR), X-Ray Diffraction (XRD), Differential Scanning Calorimetry (DSC), Scanning Electron Microscopy (SEM), Atomic Force Microscopy (AFM), tensile testing, contact angle and swelling experiments. The crosslinked membranes showed an increase in surface hydrophobicity from the contact angle measurements as compared to the uncrosslinked membranes. AFM surface topography showed that the membrane surfaces have nodular structures and are rough at the nanometer scale and affected by the crosslinking conditions such as concentration and reaction time. Surface hydrophobicity and roughness was found to increase with increasing degree of crosslinking. DSC measurements showed an increase in melting temperature of the polymer membranes after crosslinking. For the PV dehydration of ethanol, a decrease in flux and an increase in selectivity were observed with increase in the degree of crosslinking. Effects of membrane thickness (of PVA layer) for crosslinked PVA-PSf composite membranes were studied on PV dehydration of ethanol. Total flux and selectivity were statistically analyzed as a function of the membrane thickness. In general, the outcome agrees with the solution-diffusion (S-D) theory: the total flux was found to be significantly affected by the PVA layer thickness, while the selectivity remains nearly unaffected. Using the S-D theory, the mass transfer resistance of the selective layers was calculated and found to increase with thickness. The relatively small change observed for selectivity has been related to the crosslinking of the PVA layer that increases the surface hydrophobicity of the membrane. Chitosan-Poly(vinyl alcohol), or CS-PVA, blended membranes were prepared by varying the blending ratio to control membrane crystallinity and its effect on the PV dehydration of ethylene glycol. The blended membranes were crosslinked interfacially with trimesoyl chloride (TMC)/hexane. The crystallinity of the membrane was found to decrease with increasing CS wt% in the blend. Although the crosslinked CS-PVA blend membranes showed improved mechanical strength, they became less flexible as detected in tensile testing. The resulting crosslinked CS-PVA blended membranes showed high flux and selectivity simultaneously, for 70-80wt% CS in the blend. The effect of feed flow-rate was studied to find the presence of concentration polarization for 90wt% EG in feed mixture as well. The crosslinked blend membrane with 75wt% CS showed a highest total flux of 0.46 kg/m2/h and highest selectivity of 663 when operating at 70oC with 90wt% EG in the feed mixture. Effects of crosslinking concentration and reaction time of trimesoyl chloride (TMC) were studied on poly(vinyl alcohol)-poly(sulfone) or PVA-PSf composite membranes. Results showed a consistent trend of changes in the physicochemical properties: the degree of crosslinking, crystallinity, surface roughness, hydrophilicity and swelling degree all decrease with increasing crosslinking agent (TMC) concentration and reaction time. The crosslinked membrane performance was assessed with PV dehydration of ethylene glycol-water mixtures at a range of concentrations (30 to 90wt% EG). The total flux of permeation was found to decrease, while the selectivity to increase, with increasing TMC concentration and reaction time. The decrease in flux was most prominent at low EG concentrations in the feed mixtures. A central composite rotatable design (CCRD) of response surface methodology was used to analyze PV dehydration performance of crosslinked poly(vinyl alcohol) (PVA) membranes. Regression models were developed for the flux and selectivity as a function of operating conditions such as, temperature, feed alcohol concentration, and flow-rate. Dehydration experiments were performed on two different alcohol-water systems: isopropanol-water (IPA-water) and ethanol-water (Et-water) mixtures around the azeotrope concentrations. Judged by the lack-of-fit criterion, the analysis of variance (ANOVA) showed the regression model to be adequate. The predicted flux and selectivity from the regression models were presented in 3-D surface plots over the whole ranges of operating variables. For both alcohol-water systems, quadratic effect of temperature and feed alcohol concentration showed significant (p < 0.0001) influence on the flux and selectivity. A strong interaction effect of temperature and concentration was observed on the selectivity for the Et-water system. For the dehydration of azeotropic IPA-water mixture (87.5wt% IPA), the optimized dehydration variables were found to be 50.5oC and 93.7 L/hr for temperature and flow-rate, respectively. On the other hand for azeotropic Et-water mixture (95.5wt% Et), the optimized temperature and flow-rate were found to be 57oC and 89.2 L/hr, respectively. Compared with experiments performed at optimized temperature and feed flow-rate, the predicted flux and selectivity of the azeotropic mixtures showed errors to be within 3-6 %.

This thesis describes a number of novel experiments contributing to the understanding of protein adsorption from both a fundamental and applied perspective. The first three papers involve the use of the localized surface plasmon resonance of gold nanospheres to measure protein conformational dependencies during heat and acid denaturation. Thermal denaturation of BSA is shown to proceed differently depending on the size of nanosphere to which it is conjugated. Activation energies are extracted for thermal denaturing on nanoparticles. These energies decrease with decreasing radius of curvature. Under pH perturbation in the acid region, the multiple transition states of bulk BSA are suppressed, and only one apparent transition around pH 4 is evident. Smaller spheres (diameter < 20nm) do not exhibit any transition. A significant finding of all three studies is that the state and stability of BSA depends strongly upon local curvature. The last two papers investigate protein adsorption relevant to the biomaterial field. Investigation of protein adsorption to polyHEMA hydrogels is carried out using a quartz crystal microbalance. Single and mixed protein adsorption kinetics for BSA, lysozyme and lactoferrin are extracted and interpreted. Selected commercial cleaning solutions are shown to be no more effective than simple buffer solution. Examination of commercial lenses indicates that the morphology of adsorption is material dependent and that siloxane-based hydrogels only deposit low levels of protein. A unique fibril-like morphology is identified on galyfilcon A. Protein morphology is discussed in terms of bare lens morphology, roughness, and surface composition.

Pervaporation (PV), a non-porous membrane separation process, is gaining considerable attention for solvent separation in a variety of industries ranging from chemical to food and pharmaceutical to petrochemicals. The most successful application has been the dehydration of organic liquids, for which hydrophilic membranes are used. However, during pervaporation, excessive affinity of water towards hydrophilic membranes leads to undesirable swelling (water absorption) of the membrane matrix. To control swelling, often hydrophilic membranes are crosslinked to modify physicochemical (surface and bulk) properties. Since the transport of species in pervaporation is governed by sorption (affected by surface and bulk properties) and diffusion (affected by bulk properties), it is essential to study the effect of crosslinking on the surface and bulk physicochemical properties and their effects on separation performance. This thesis focuses on the effect of crosslinking on the physicochemical properties (e.g., crystallinity, hydrophilicity, surface roughness) of hydrophilic polymeric membranes and their dehydration performance alcohol-water mixtures. Poly(vinyl alcohol), PVA was used as the base polymer to prepare membranes with various morphologies such as homogeneous, blended (with Chitosan, CS) and composite (with poly(sulfone), PSf) structures. Before applying the crosslinked membranes for the PV dehydration of alcohols, the physicochemical characterization were carried out using Attenuated Total Reflection-Fourier Transform Infrared Spectroscopy (ATR-FTIR), X-Ray Diffraction (XRD), Differential Scanning Calorimetry (DSC), Scanning Electron Microscopy (SEM), Atomic Force Microscopy (AFM), tensile testing, contact angle and swelling experiments. The crosslinked membranes showed an increase in surface hydrophobicity from the contact angle measurements as compared to the uncrosslinked membranes. AFM surface topography showed that the membrane surfaces have nodular structures and are rough at the nanometer scale and affected by the crosslinking conditions such as concentration and reaction time. Surface hydrophobicity and roughness was found to increase with increasing degree of crosslinking. DSC measurements showed an increase in melting temperature of the polymer membranes after crosslinking. For the PV dehydration of ethanol, a decrease in flux and an increase in selectivity were observed with increase in the degree of crosslinking. Effects of membrane thickness (of PVA layer) for crosslinked PVA-PSf composite membranes were studied on PV dehydration of ethanol. Total flux and selectivity were statistically analyzed as a function of the membrane thickness. In general, the outcome agrees with the solution-diffusion (S-D) theory: the total flux was found to be significantly affected by the PVA layer thickness, while the selectivity remains nearly unaffected. Using the S-D theory, the mass transfer resistance of the selective layers was calculated and found to increase with thickness. The relatively small change observed for selectivity has been related to the crosslinking of the PVA layer that increases the surface hydrophobicity of the membrane. Chitosan-Poly(vinyl alcohol), or CS-PVA, blended membranes were prepared by varying the blending ratio to control membrane crystallinity and its effect on the PV dehydration of ethylene glycol. The blended membranes were crosslinked interfacially with trimesoyl chloride (TMC)/hexane. The crystallinity of the membrane was found to decrease with increasing CS wt% in the blend. Although the crosslinked CS-PVA blend membranes showed improved mechanical strength, they became less flexible as detected in tensile testing. The resulting crosslinked CS-PVA blended membranes showed high flux and selectivity simultaneously, for 70-80wt% CS in the blend. The effect of feed flow-rate was studied to find the presence of concentration polarization for 90wt% EG in feed mixture as well. The crosslinked blend membrane with 75wt% CS showed a highest total flux of 0.46 kg/m2/h and highest selectivity of 663 when operating at 70oC with 90wt% EG in the feed mixture. Effects of crosslinking concentration and reaction time of trimesoyl chloride (TMC) were studied on poly(vinyl alcohol)-poly(sulfone) or PVA-PSf composite membranes. Results showed a consistent trend of changes in the physicochemical properties: the degree of crosslinking, crystallinity, surface roughness, hydrophilicity and swelling degree all decrease with increasing crosslinking agent (TMC) concentration and reaction time. The crosslinked membrane performance was assessed with PV dehydration of ethylene glycol-water mixtures at a range of concentrations (30 to 90wt% EG). The total flux of permeation was found to decrease, while the selectivity to increase, with increasing TMC concentration and reaction time. The decrease in flux was most prominent at low EG concentrations in the feed mixtures. A central composite rotatable design (CCRD) of response surface methodology was used to analyze PV dehydration performance of crosslinked poly(vinyl alcohol) (PVA) membranes. Regression models were developed for the flux and selectivity as a function of operating conditions such as, temperature, feed alcohol concentration, and flow-rate. Dehydration experiments were performed on two different alcohol-water systems: isopropanol-water (IPA-water) and ethanol-water (Et-water) mixtures around the azeotrope concentrations. Judged by the lack-of-fit criterion, the analysis of variance (ANOVA) showed the regression model to be adequate. The predicted flux and selectivity from the regression models were presented in 3-D surface plots over the whole ranges of operating variables. For both alcohol-water systems, quadratic effect of temperature and feed alcohol concentration showed significant (p < 0.0001) influence on the flux and selectivity. A strong interaction effect of temperature and concentration was observed on the selectivity for the Et-water system. For the dehydration of azeotropic IPA-water mixture (87.5wt% IPA), the optimized dehydration variables were found to be 50.5oC and 93.7 L/hr for temperature and flow-rate, respectively. On the other hand for azeotropic Et-water mixture (95.5wt% Et), the optimized temperature and flow-rate were found to be 57oC and 89.2 L/hr, respectively. Compared with experiments performed at optimized temperature and feed flow-rate, the predicted flux and selectivity of the azeotropic mixtures showed errors to be within 3-6 %.

This thesis describes a number of novel experiments contributing to the understanding of protein adsorption from both a fundamental and applied perspective. The first three papers involve the use of the localized surface plasmon resonance of gold nanospheres to measure protein conformational dependencies during heat and acid denaturation. Thermal denaturation of BSA is shown to proceed differently depending on the size of nanosphere to which it is conjugated. Activation energies are extracted for thermal denaturing on nanoparticles. These energies decrease with decreasing radius of curvature. Under pH perturbation in the acid region, the multiple transition states of bulk BSA are suppressed, and only one apparent transition around pH 4 is evident. Smaller spheres (diameter < 20nm) do not exhibit any transition. A significant finding of all three studies is that the state and stability of BSA depends strongly upon local curvature. The last two papers investigate protein adsorption relevant to the biomaterial field. Investigation of protein adsorption to polyHEMA hydrogels is carried out using a quartz crystal microbalance. Single and mixed protein adsorption kinetics for BSA, lysozyme and lactoferrin are extracted and interpreted. Selected commercial cleaning solutions are shown to be no more effective than simple buffer solution. Examination of commercial lenses indicates that the morphology of adsorption is material dependent and that siloxane-based hydrogels only deposit low levels of protein. A unique fibril-like morphology is identified on galyfilcon A. Protein morphology is discussed in terms of bare lens morphology, roughness, and surface composition.