The ability of Nakivubo wetland (which has performed tertiary water treatment for Kampala city for the past 40 years) to respond to pollution and to protect the water quality of Inner Murchison Bay of Lake Victoria was investigated. The aim of this study was to assess the capacity of Nakivubo wetland to remove nitrogen from the wastewater after its recent encroachment and modification, in order to optimize biological nitrogen removal processes using constructed wetland technology. Field studies were performed to assess the hydraulic loading, stability and water quality of this wetland. The distribution and activity of ammonium-oxidizing bacteria (AOB) in Nakivubo channel and wetland were also investigated, and the significance of the different matrices in biological nitrogen transformations within the two systems elucidated. Studies to optimize nutrient removal processes were carried out at pilot scale level both in container experiments and in the field using substrate-free constructed wetlands (CWs) planted with Cyperus papyrus and Miscanthidium violaceum which were adapted to the local ecological conditions. Results showed that Nakivubo wetland performs tertiary treatment for a large volume of wastewater from Kampala city, which is characterised by large quantities of nutrients, organic matter and to a lesser extent metals. Mass pollutant loads showed that wastewater effluent from a sewage treatment plant constituted a larger proportion of nitrogen and phosphorus and biochemical oxygen demand (BOD) discharged into the wetland. The upper section of Nakivubo wetland exhibited high removal efficiencies for BOD, whereas little or no ammonium-nitrogen and metals except Lead were removed by wetland. Studies further showed that nitrifying bacteria existed in the wetland but their activity was limited by oxygen depletion due to the high BOD in the wastewater and heterotrophic bacteria from the sewage treatment plant. Distributional studies indicated the presence of more AOB in surface sediments than the water column of the lower section of Nakivubo channel, an indication that nitrifiers settled with particulate matter prior to discharge into the wetland, and thus did not represent seeding of the wetland. The significant reductions in concentrations of BOD compared to ammonium and total nitrogen in the channel and wetland wastewater confirmed this finding. Whereas suspended nitrifiers upstream of Nakivubo channel equally influenced total nitrogen balance as those in surface sediments, epiphytic nitrification was more important than that of sediment/peat compartments in the wetland, and thus highlighted the detrimental impacts of wetland modification on the water quality Inner Murchison Bay and Lake Victoria as a whole. Performance assessment of pilot-scale container experiments and field-based CWs indicated highly promising treatment efficiencies, notably in papyrus-based treatments. Plant biomass productivity, nutrient storage, and overall system treatment performance were higher in papyrusbased constructed wetlands, and resulted in effluent that met national discharge limits. Thus, papyrus-based CWs were found to be operationally efficient in removing pollutants from domestic wastewater. / QC 20101028