Techn. Universiẗat, Diss., 2005--München.

Made available in DSpace on 2014-12-17T15:32:32Z (GMT). No. of bitstreams: 1 FernandoJON_TESE.pdf: 1862708 bytes, checksum: c0bcb5ceb1bfbf2e1312b265a0c10350 (MD5) Previous issue date: 2013-09-13 / Periodontal disease is an infectious disease resulting from the immunoinflammatory response of the host to microorganisms present in the dental biofilm which causes tissue destruction. The objective of this study was to evaluate the immunohistochemical expression of cyclophilin A (CYPA), extracellular matrix metalloproteinase inducer (EMMPRIN) and matrix metalloproteinase 7 (MMP-7) in human specimens of clinically healthy gingiva (n=32), biofilm-induced gingivitis (n=28), and chronic periodontitis (n=30). Immunopositivity for CYPA, EMMPRIN and MMP-7 differed significantly between the three groups, with higher percentages of staining in chronic periodontitis specimens, followed by chronic gingivitis and healthy gingiva specimens (p < 0.001). Immunoexpression of CYPA and MMP-7 was higher in the intense inflammatory infiltrate observed mainly in cases of periodontitis. Analysis of possible correlations between the immunoexpression of EMMPRIN, MMP-7 and CYPA and between the expression of these proteins and clinical parameters (probing depth and clinical attachment loss) showed a positive correlation of CYPA expression with MMP-7 (r = 0.831; p < 0.001) and EMMPRIN (r = 0.289; p = 0.006). In addition, there was a significant positive correlation between probing depth and expression of MMP-7 (r = 0.726; p < 0.001), EMMPRIN (r = 0.345; p = 0.001), and CYPA (r = 0.803; p < 0.001). These results suggest that CYPA, EMMPRIN and MMP-7 are associated with the pathogenesis and progression of periodontal disease / A doen?a periodontal ? uma entidade infecciosa que resulta da resposta imuno-inflamat?ria do hospedeiro aos microrganismos presentes no biofilme dent?rio, levando ? destrui??o tecidual. O prop?sito do presente estudo foi avaliar a express?o imuno-histoqu?mica da ciclofilina A (CYPA), do indutor de metaloproteinases da matriz extracelular (EMMPRIN) e da metaloproteinase da matriz 7 (MMP-7) em esp?cimes humanos de gengiva clinicamente saud?vel (n=32), gengivite induzida por biofilme dent?rio (n=28) e periodontite cr?nica (n=30). Foram realizadas bi?psias das tr?s condi??es cl?nicas e feita a an?lise imuno-histoqu?mica atrav?s da contagem total do n?mero de c?lulas positivas, correlacionando-a com par?metros cl?nicos. A imunopositividade da CYPA, do EMMPRIN e da MMP-7 revelou diferen?a estatisticamente significativa entre os tr?s grupos, com maiores percentuais de positividade nos esp?cimes de periodontite cr?nica, seguidos pelos esp?cimes de gengivite cr?nica e de gengiva saud?vel (p < 0,001). Foi evidenciada maior express?o de CYPA e MMP-7 nos grupos que tinham infiltrado inflamat?rio mais intenso. Foram observadas correla??es das imunoexpress?es de EMMPRIN, MMP-7 e CYPA, tanto entre si como com par?metros cl?nicos (profundidade de sondagem e perda de inser??o cl?nica). Foram verificadas correla??es positivas entre a express?o de CYPA e as express?es da MMP-7 (r = 0,831; p < 0,001) e do EMMPRIN (r = 0,289; p = 0,006). Al?m disso, a profundidade de sondagem revelou correla??o positiva, estatisticamente significativa, com as express?es de MMP-7 (r = 0,726; p < 0,001), EMMPRIN (r = 0,345; p = 0,001) e CYPA (r = 0,803; p < 0,001). Esses resultados evidenciam que a CYPA, o EMMPRIN e a MMP-7 podem estar associadas ? patog?nese e progress?o da doen?a periodontal

Les phénomènes d’ischémie-reperfusion sont rencontrés dans plusieurs situations physiopathologiques. Le seul traitement de l’ischémie repose sur une restauration précoce du flux sanguin. Paradoxalement, la reperfusion génère des lésions supplémentaires, appelées « lésions de reperfusion », dont la mitochondrie est un acteur majeur via l’ouverture du pore de transition de perméabilité mitochondrial (mPTP). L’ouverture du mPTP est principalement modulée par la cyclophiline D (CypD), une protéine de la matrice mitochondriale, dont l’inhibition pharmacologique par la cyclosporine A (CsA) permet de limiter l’ouverture du pore. Cette inhibition, obtenue in vitro et in vivo, permet de réduire les lésions de reperfusion. Néanmoins, de récents essais cliniques n’ont pas permis de confirmer ce bénéfice dans le cadre de l’infarctus du myocarde, soulignant la nécessité de développer de nouveaux inhibiteurs du mPTP. Dans ce travail, nous avons étudié l’effet de nouveaux ligands de la CypD sur l’ouverture du mPTP. Ces petites molécules innovantes, de structure radicalement différente de la CsA inhibent l’ouverture du mPTP de mitochondries isolées et le dérivé le plus actif, le C31, permet une inhibition plus efficace du mPTP que la CsA. Le C31 inhibe également le mPTP au niveau cellulaire, dans des hépatocytes primaires et dans des cardiomyocytes isolés. In vivo, le C31 atteint les mitochondries hépatiques et protège le foie dans un modèle d’ischémie-reperfusion hépatique. Cependant, la stabilité métabolique du C31 ne lui permet pas d’atteindre le cœur. La poursuite du développement de ces inhibiteurs pourrait aboutir à de nouveaux candidats pour protéger les organes des lésions de reperfusion. / Ischemia-reperfusion can occur in various pathophysiological situations such as myocardial infarction or organ transplantation. The only available treatment of ischemia relies on a timely reperfusion which paradoxically causes additional damage, so-called « reperfusion injury ». Mitochondria play a central role in this phenomenon through the opening of the mitochondrial permeability transition pore (mPTP) which extends cell death. mPTP opening is modulated by the matrix protein cyclophilin D (CypD). CypD inhibition by cyclosporin A (CsA), the most described CypD inhibitor, limits reperfusion injury in vivo. Nevertheless, recent clinical trials failed to recapitulate such protection in the context of myocardial infarction, emphasizing the urge to develop new mPTP inhibitors. Here, we investigated the effects of new CypD ligands on mPTP opening. We demonstrated that these small molecules unrelated to CsA are potent mPTP inhibitors and that the most active compound, C31, exhibited stronger mPTP-inhibiting properties as compared to CsA. C31 also inhibited mPTP opening in primary hepatocytes and isolated cardiomyocytes. In vivo, C31 reaches liver mitochondria and protects mitochondrial function in a hepatic ischemia-reperfusion model. Nevertheless, C31 metabolic stability hampers cardiac uptake of the compound. Further development of these new inhibitors might lead to interesting candidates to protect organs against ischemia-reperfusion injury.

No description available.

Cyclophilin-40 (CyP40) promotes the formation of the gel shift complex containing baculovirus aryl hydrocarbon receptor (AhR), AhR nuclear translocator (Arnt) and dioxin response element (DRE). CyP40 was found to play a role in the AhR signaling since when the CyP40 content in MCF-7 cells is reduced, up-regulation of cyp1a1 and cyp1b1 by 3-methylcholanthrene (3MC) is also reduced, suggesting that CyP40 is essential for maximal AhR function. The CyP40 region containing amino acids 186-215, but not the peptidylprolyl cis-trans isomerase and tetratricopeptide repeat domains, is essential for forming the AhR/Arnt/DRE complex. CyP40 is found in the cell nucleus after 3MC treatment and appears to promote the DRE binding form of the AhR/Arnt heterodimer. Coprecipitation data suggests CyP40 binds weakly to AhR, but not Arnt. We report on the progress of applying bioluminescence resonance energy transfer and chromatin immunoprecipitation techniques to further elucidate the role of CyP40 in the aryl hydrocarbon receptor signaling pathway.

Thèse numérisée par la Direction des bibliothèques de l'Université de Montréal.

The Sun is the ultimate energy source on Earth. Photosynthetic organisms are able to catalyze the conversion of solar energy to chemical energy by a reaction called photosynthesis. In plants, this process occurs inside a green organelle called the chloroplast. The protein complexes involved in the photosynthetic light reactions are situated in the thylakoid membrane, which encloses a tiny space called lumen. The Peptidyl-Prolyl cis-trans Isomerase (PPIase) family is the most abundant protein family in the thylakoid lumen. The three PPIase subfamilies, cyclophilins, FKBPs (FK506 binding proteins) and parvulins form a group by their enzymatic activity despite lack of sequence similarity between the subfamilies. Cyclophilins and FKBPs, collectively called immunophilins, were originally discovered as the targets of the immunosuppressive drugs cyclosporine A and FK506, respectively. By suppressing the immune response in humans, these immunophilin-drug complexes revolutionized the field of organ transplantation by preventing graft rejection. Cis-trans isomerization of peptide bonds preceding the amino acid proline is the rate-limiting step of protein folding and several immunophilins have been shown to be important for catalysis of protein folding in vivo. PPIases have been found to be part of large protein complexes as well as in functions such as signalling, protein secretion, RNA processing and cell cycle control. A picture is therefore emerging in which the actual interaction between the PPIase and its target is perhaps more important than the PPIase activity. In the present work, PPIases have been characterized in the chloroplast thylakoid lumen of Spinacia oleracea (spinach) and Arabidopsis thaliana (Arabidopsis). The most active PPIase in the spinach lumen was identified as the cyclophilin TLP20. AtCYP20-2, the Arabidopsis homologue of TLP20, was found to be upregulated at high light and attached to the thylakoid membrane, more precisely to the outer regions of photosystem II supercomplexes. In Arabidopsis, up to 5 cyclophilins and 11 FKBPs were predicted to reside in the lumen. Of these 16 immunophilins, only 2 were identified as active PPIases and significant differences were observed between the two plant species. AtCYP20-2, like TLP20, is an active isomerase although AtFKBP13 is the most active PPIase in the lumen of Arabidopsis. Mutant Arabidopsis plants deficient in AtCYP20-2 displayed no phenothypical changes or decrease in total lumenal PPIase activity. Being the only active PPIase in the mutants, the redox sensitive AtFKBP13 is proposed to compensate for the lack of AtCYP20-2 by oxidative activation. In agreement with the experimental data, the sequence analyses of catalytic domains of lumenal immunophilins demonstrate that only AtCYP20-2 and AtFKBP13 possess the amino acids found essential for PPIase activity in earlier studies of human cyclophilin A and FKBP12. It is concluded that with the exception of AtCYP20-2 and AtFKBP13 most immunophilins in the lumen of Arabidopsis lost their PPIase activity on peptide substrates and developed other specialized functions.

An efficient and expedient synthetic method was developed for the preparation of chiral poly-substituted morpholine and oxazepine derivatives. The method was designed in the objective of applying the synthesis to the preparation of Cyclophilin A inhibitors. / The stereo- and regioselective method involves the reaction of enantiopure beta-amino alcohols with alpha,beta-unsaturated aldehydes. The synthesis proceeds through three steps; i) Reductive amination, ii) N-alkylation/ N-tosylation and iii) intramolecular-haloetherification. Stereoselectivity of this last step was controlled by N-alkyl/ N-tosyl groups and substitution across the double bond, and was enhanced by the addition of Bronsted acids. Substitution across the double bond of the starting material controlled the regioselectivity of the method. Morpholines were obtained through 6- exo cyclization and oxazepines were obtained through 7-endo cyclization. / A small library of morpholine-based derivatives was designed in-silico. Affinity and binding modes to the Cyclophilin A were investigated through a docking-based virtual screening study.

Among the peptidyl prolyl isomerases, the Cyclophilin family of proteins has been linked to various cellular activities such as regulation of homeostasis, mitochondrial permeability, and cell death. Their functionality spans throughout the cell and throughout all cell types as different isoforms. Previous studies done on Cyclophilin A revealed an interesting contact ensemble when bound to a substrate. Because of the similarity of CypA to its homologues, it is believed that they too will exhibit the same contact dynamics. We have defined the dynamics of cyclophilin isoforms through Molecular Dynamics simulations and determined their contact dynamics, characterizing their contact ensembles, and their relative dynamical conservation to each other.

L’arrêt cardiaque (AC) est un problème de santé publique dont la mortalité reste très élevée malgré les progrès de la réanimation. La majorité des décès à distance de la réanimation cardio-pulmonaire (RCP) initiale est la conséquence du syndrome post‑AC provoqué par les lésions cellulaires d'ischémie-reperfusion (I/R) qui touchent principalement le cœur et le cerveau. L’ouverture du pore de transition de perméabilité mitochondrial (PTP), en lien avec la cyclophiline D (CypD), est un déterminant majeur des lésions d'I/R. L’hypothermie thérapeutique est le seul traitement adjuvant de la RCP qui a démontré un bénéfice sur la survie des patients en limitant le syndrome post-AC. Ses mécanismes d’action complexes ne sont que partiellement compris. Dans ce travail de thèse, nous avons, dans un premier temps, utilisé notre modèle d'AC chez le lapin pour étudier les mécanismes mitochondriaux de l’hypothermie thérapeutique. Notre modèle a d'abord permis de mettre en évidence le rôle important joué par la température dans la gravité du syndrome post‑AC et les effets protecteurs de l’hypothermie sur le cœur et le cerveau. Notre travail montre également que l'hypothermie inhibe l’ouverture du PTP par un mécanisme dépendant de la CypD et agit sur une voie de signalisation cellulaire. Nous avons, dans un second temps, mis au point un nouveau modèle d'AC chez la souris déficiente en CypD montrant que l'inhibition complète du mécanisme dépendant de la CypD d'ouverture du PTP améliore le succès de la RCP ainsi que le pronostic à long terme des animaux traités par hypothermie thérapeutique. Ainsi, nos travaux contribuent à identifier les mécanismes d'action mitochondriaux de l’hypothermie thérapeutique ainsi que des pistes pour améliorer le pronostic des patients après un AC réanimé / Despite advances in resuscitation science, mortality after cardiac arrest (CA) remains very high. A substantial proportion of cardiac arrest deaths occur in patients following successful resuscitation and can be attributed to the development of post-CA syndrome caused by cellular ischemia-reperfusion (I/R) injury that primarily affect heart and brain cells. The opening of the mitochondrial permeability transition pore (PTP), promoted by cyclophilin D (CypD), is a major determinant of I/R injuries. Therapeutic hypothermia is the only adjuvant therapy to cardiopulmonary resuscitation (CPR) known to improve survival by limiting the post-AC syndrome. The mechanisms of action of therapeutic hypothermia are still poorly understood. In this present work, we used our model of CA in rabbit to study the role of the PTP in the mechanisms of action of therapeutic hypothermia. Our model first highlighted the important role played by temperature in the severity of post-AC syndrome and the protective effects of hypothermia on heart and brain injuries. Our work also determined that hypothermia inhibited PTP opening by a CypD-dependent mechanism and acted on a pro-survival signaling pathway. We then developed a new CA model using CypD-deficient mice showing that complete inhibition of the CypD-dependent mechanism of PTP opening improved success of CPR and long-term survival of hypothermia-treated animals. Thus, our work contributes to identifying the mitochondrial mechanisms of action of therapeutic hypothermia and ways to improve the prognosis of patients after CA