The northeast African continental margin of the Western Desert of Egypt is host to a complexly deformed series of Phanerozoic basins. Substantial sedimentary deposition (~5 km) and basin formation resulted from regional deformation due to continental collision and repeated rifting and inversion cycles. Limited sedimentary exposure and exploration has prevented elucidation of Phanerozoic basin evolution, particularly in the Paleozoic. Previous studies of the region have largely relied upon sedimentary analysis, gravity, and 2D/3D seismic data. This study, in contrast, has employed extensive use of detrital zircon (U-Th)/He thermochronology (n=1004) from 17 wells in conjunction with 3D seismic, well log correlation, and heat flow data to elucidate a spatiotemporally comprehensive tectonic and stratigraphic model. The detrital zircon thermochronometric data provides new evidence that the lower Paleozoic, Carboniferous, and Mesozoic stratigraphic sequences of the Western Desert represent thermally distinct, tectonically controlled sequences with independent thermal evolutions. The lower Paleozoic sequence has been partially thermally reset, reaching temperatures of ~140-170 ̊C. Partial resetting is noted throughout the region and reached its thermal maximum in the Permo-Triassic, synchronous with onset of Neotethyan rifting. The Carboniferous sequence has not been thermally reset, with exposure to temperatures no greater than ~140 ̊C and reaching thermal maximum presently. Carboniferous (U-Th)/He ages have dominant input from short-lag-time zircons (exhumation to deposition) and indicate the stratigraphic sequence was proximally sourced. The proximal sourcing is likely from transmitted stress and fault reactivation in Egypt during the Hercynian Orogeny that caused fault block exhumation and erosional unroofing. Sediment was shed from uplifted fault blocks that formed the eastern boundary of the Carboniferous sequence. The Mesozoic sequence has not been thermally reset, reaching temperatures no greater than ~120 ̊C and presently reaching thermal maximum. Localized areas with stacking of lower Paleozoic, Carboniferous, and Mesozoic sequences likely bury the lower Paleozoic to abnormally deep depths (~7 km) and elevated temperatures of ~200 ̊C. Evidence from faulting relationships, basin controlling structures, and heat flow data indicate that N-S trending basement structures may define a region of crustal transition between the Archean-Paleoproterozoic Saharan Metacraton and the juvenile Arabian-Nubian Shield. / text