Temperature variation experienced across a latitudinal range is tied to changes in lifespan and life history across multiple taxa. Two patterns of adaptation to latitudinal temperature variation have been documented – counter-gradient (or co-gradient) variation, and local adaptation. To determine how natural selection has shaped life history variation in a burying beetle, Nicrophorus orbicollis, we quantified lifetime patterns of reproduction in two populations that represent the geographic and temperature extremes occupied by the species. Lifetime reproduction was quantified at two temperatures that represented conditions typical for each population. Burying beetles from different extremes of their geographic range show considerable variation in lifetime survival and reproduction at different temperatures. Patterns are generally consistent with the local adaptation hypothesis. However, at the higher temperature both populations have lower and equal numbers of offspring over a lifetime. High temperatures may create a constraint on offspring production because of the increased cost of maintaining the food source against bacterial decomposition. This temperature constraint on reproductive success may partially explain the absence of burying beetles from tropical environments, and may predict reductions in latitudinal range as global climate change proceeds.

Communities are defined as the ensemble of populations that interact with each other and with the environment in a specific time and location. Community ecology studies how communities assemble, what are the patterns of diversity, abundance, and composition of species, and the processes driving these patterns. It includes four basic mechanisms for the assembly of communities: dispersal, drift, selection, and speciation, with each mechanism influencing how the communities change in a different way. Dispersal, the movement of species from one geographical location to another, plays a major role in the recolonization of barren environments and the introduction of new species to established environments. Drift (i.e., random birth and death events within a community) could, theoretically, be negligible in bacterial communities where the high population densities are expected to buffer its effect. Conversely, horizontal gene transfer can be a strong selective force, as horizontally transferred genetic material is a source of functional traits that may provide selective advantages to the recipient cells, especially in environments where strong selection pressure occurs. In my Ph.D. thesis, I aim to examine these three contrasting mechanisms in controlled, simplified bacterial communities that are designed and studied through a synthetic ecology approach. I found that even at low dispersal rates, the species abundance of planktonic bacterial communities can be homogenized by migration. This homogenization can occur even when there are strong variable selection forces interacting in each environment. I also found strong evidence on the importance of stochasticity in communities. Drift can decrease the community similarity by up to 6.3%, and increases the probabilities that species become extinct, especially in the case of rare taxa. In contrast, I found that naturally competent bacteria are favored to uptake more DNA in communities that are highly productive and phylogenetically diverse. This pattern is explained by a potential higher availability of naked DNA for naturally competent bacteria, presumably because there are more cells and the predation systems are more effective. Altogether, our findings support the theory on the importance of stochastic forces and their interaction with deterministic forces on the shaping of microbial community assembly.

The rate of global urbanization is increasing rapidly as the human population expands, leading to species loss and biotic homogenization. Less studied, however, is the effect of urbanization on the frequency and efficiency of species interactions. Animal-based seed dispersal interactions may be especially sensitive to urbanization because they depend on several factors: 1) the rate of seed dispersal interactions (feeding), 2) diversity of disperser species, 3) the probability of seed dispersal and 4) the probability of germination after seed dispersal. However, how urbanization disrupts species interactions, including seed-dispersal, is still poorly known. In this study, we evaluate differences in the frequency and efficiency of seed dispersal between urban and natural sites using Eastern Poison Ivy (Toxicodendron radicans) as the focal species. Individual T. radicans lianas within natural and urban sites were observed in twelve-minute intervals (total 185.8 hours) at urban and natural sites during which the number and identity of feeding avian species was recorded. A total of 9500 fruits between natural and urban sites were marked with a UV fluorescent dye. Undispersed marked fruits were recovered via seed traps to estimate probability of dispersal. Defecated fruits were collected from natural and urban sites to evaluate germination efficiency after dispersal. Feeding rate was twice as high in urban compared to natural sites (P=0.007). Additionally, seed disperser diversity was on average twice as high in urban sites and species composition was significantly different between natural and urban sites. However, probability of seed dispersal was not significantly different between urban and natural sites (P=0.3). Interestingly, germination rate was 20% higher in defecated seeds collected from natural sites compared to defecated seeds from urban sites (P=0.005). Our results suggest that while T. radicans attracts a higher number and greater diversity of seed dispersers in urban areas, overall dispersal success is the same or even greater at natural sites, as seeds have a higher chance of germinating after being consumed by dispersers at natural compared to urban sites. Species composition differences between sites may play an important role in germinability of seeds; differences in species’ feeding strategies result in differences in their ability to scarify seeds in their digestive systems, a necessary step for seeds that rely on animal seed dispersers. Urbanization can thus negatively affect seed dispersal interactions by altering the composition of disperser species. Other animal-based interactions may be similarly affected by urbanization, and thus we emphasize the need for further studies.

Non-native scale insects can be economically and ecologically important pests of urban forests. Crapemyrtle bark scale (CMBS), Acanthococcus lagerstroemiae Kuwana (Hemiptera: Eriococcidae), is a scale that causes declines in plant vigor for a popular ornamental tree in the southeastern United States, crapemyrtle (Lagerstroemia spp.). CMBS has spread rapidly throughout the Southeast and, more recently, into the Middle Atlantic. Despite problems associated with CMBS, important aspects of its ecology, such as the role of propagule pressure in establishment and the relative importance of mechanisms for between-tree dispersal, are not well-understood. We used field and laboratory studies to investigate these aspects of CMBS population ecology, finding that just one female CMBS ovisac can establish new populations and that nymphs are dislodged at low wind speeds (7 m/s) from crapemyrtle twigs. Our results highlight the importance of thorough phytosanitation practices in crapemyrtle nurseries and provide evidence for wind-mediated and phoretic dispersal by CMBS.

We determined genetic variance and gene flow across multiple scales (reaches, headwater segments, and catchments) to examine the dispersal ability of the flatworm Polycelis coronata along the Wasatch Mountains of Utah. Multiple models predict patterns of genetic differentiation in stream invertebrates based on dispersal traits and the spatial connectivity of the habitat. The stream hierarchy model predicts genetic differentiation to be low and gene flow to be high between reaches nested in segments, moderate among segments within catchments, and differentiation to be highest and gene flow lowest among catchments, whereas the headwater model predicts the greatest differentiation between headwater segments. Our objective was to determine which model best described genetic patterns observed in P. coronata. Using a nested hierarchical sampling design ensured that if limitations to dispersal had an effect on genetic differentiation, we would be able to identify at what scale these processes operate. We hypothesized genetic variation would be small within headwater segments and reach maximum levels between headwater segments with no increase in differentiation with increasing distance between headwater patches or between drainages. We do not expect high dispersal along the stream network or across the terrestrial environment (actively or passively).We generated DNA sequence data (mitochondrial COI) from 50 sites nested within 24 segments, which were nested in four adjacent catchments. We identified 134 haplotypes from 506 individuals using a 763 bp fragment of mtDNA. Genetic patterns did not conform to the SH model. Evidence from one drainage (Provo River) was consistent with the headwater model. However, high differentiation within sites suggested that the genetic patterns we uncovered may be representative of high ancestral polymorphism among pre-fragmented populations that were historically widespread. Large effective population sizes and no evidence of bottleneck events suggest incomplete lineage cannot be discounted as an explanation of high differentiation at the smallest scales.

Speleothems (cave carbonate deposits) have been recognized as a multi-proxy paleoclimate archive. Variations in carbon and oxygen isotopes in speleothems can record past climate changes (e.g., temperature, rainfall and vegetation) under isotopic equilibrium conditions. However, non-climatic noises caused by in-cave processes may affect these stable isotope records under non-equilibrium isotopic conditions. The identification of equilibrium and non-equilibrium isotopic conditions in speleothems is still disputed in the speleothem research community; however, this is a prerequisite for the interpretation of carbon and oxygen isotope records in speleothems as paleoclimate proxies. In this Ph.D. thesis, a series of laboratory experiments under cave-analogue conditions were performed to simulate the formation of speleothems in natural caves. The results of these experiments demonstrate that stable isotope equilibrium in speleothems is achieved under slow carbonate precipitation in pool-like settings (pool carbonates). On the basis of these pool carbonates, equilibrium carbon and oxygen isotope fractionation factors between calcite and water (or DIC for carbon) were determined. Our experiments show larger carbon and oxygen isotope non-equilibrium fractionations between calcite and water (or DIC for carbon) in stalagmite-like settings (fast carbonate precipitate) than those determined in pool-like settings. The flow rate of drip water above the surface of stalagmite appears to control the magnitude of these non-equilibrium isotope effects which increase with decreasing the flow rate. Furthermore, a natural speleothem sample was examined as a paleoclimate archive in this thesis. The growth of a double stalagmite (WS-5d) in Wadi Sannur Cave from the Northeastern Sahara was used to infer the greening of the Sahara (intensive rainfall and vegetation). The U/Th dating in the WS-5d stalagmite suggests that greening conditions extended widely in the Sahara during the interglacial Marine Isotope Stages MIS 5.5, MIS 7.3, and the early MIS 9. Based upon oxygen isotope compositions from the WS-5d, we attributed the source of these greening periods to long-traveling rains from the Atlantic Ocean that were delivered via the West African monsoon system. Our study suggests that the two youngest greening periods were concurrent with the arrival of Homo sapiens in the Levant and an earlier possible change in human population at 244 ka, indicating a key role of the Sahara route in early human dispersal out of Africa. Finally, clumped isotope measurements (Δ47) on carbonate-derived CO2 have been shown to reflect the formation temperature of the carbonate minerals. The absolute Δ47 values of these isotopic measurements seem to be sensitive to the standardization methods (heated CO2 gases and water-equilibrated CO2 gases) that are used to normalize the raw Δ47 measurements. Neither the hypothetical base for the heated CO2 gas standardization method nor the theoretical base for the water-equilibrated CO2 gas standardization method has been experimentally tested. A series of CO2 gases were heated in pre-dehumidified quartz tubes to obtain equilibrium Δ47 values of these CO2 gases at temperature range of 50 – 1100 °C. Consequently, the first experimentally derived Δ47 – T calibration in a CO2 gas phase was proposed. This experimental calibration provides a validated base for the standardization of the raw Δ47 data. Moreover, heating CO2 in a pre-humidified quartz tube enables us to easily prepare a CO2 standard gas of a similar Δ47 value to the CO2 sample (i.e., similar Δ47 correction matrix). This will lead to an improvement in the correction scheme of the carbonate clumped isotope thermometry and reliably adjust the absolute Δ47 scale. / Thesis / Doctor of Philosophy (PhD)

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