Les tourbillons océaniques de subsurface sont des structures dynamiques qui peuplent l'océan global. Ils sont souvent générés à partir de courants d'échanges entre les bassins d'évaporation semi-fermés (comme la Mer Méditerranée, la Mer Rouge et le Golfe Persique) et l'océan ouvert ou pendant des processus de convection profonde. Ces tourbillons peuvent maintenir une géométrie cohérente sur des échelles de temps pluriannuelles et sont capables, du fait de leur migration, de transporter des quantités significatives de chaleur, sel et nutriments. Les tourbillons de subsurface contribuent donc à la redistribution tridimensionnelle des traceurs océaniques à échelle globale, d'où l'intérêt de connaître leurs positions et déplacements.En général, les tourbillons sont capables de modifier localement la surface de la mer, en générant des anomalies qui permettent leur suivi à travers des observations satellitaires. Notre étude se base sur l'utilisation de modèles analytiques et numériques pour caractériser les signatures induites à la surface par les tourbillons de subsurface; en particulier les anomalies de l'élévation (SSH), de température (SST) et de salinité (SSS) de la surface océanique.D'abord, nous avons étudié les signatures de surface (en SSH) dans un cadre idéalisé. Leurs propriétés ont été mises en relation avec la structure tridimensionnelle des tourbillons, nous permettant de déterminer que seulement les tourbillons de subsurface de meso-échelle océanique sont détectables via les observations altimétriques actuelles. En outre, en utilisant un modèle réaliste, nous avons étudié les signatures de surface des tourbillons d'eau méditerranéenne (MEDDIES) en termes de SSH, SST et SSS. L'étude a mis en évidence des différences entre les signatures en SSH et les signatures thermohalines: les premières montrent des intensités et des structures horizontales toujours liées aux changements structurels des Meddies, alors que les deuxièmes sont plutôt pilotées par la dynamique locale de surface.Enfin, nos résultats montrent que le suivi automatique des tourbillons de subsurface est plutôt envisageable à partir des techniques altimétriques, en valorisant aussi l'apport des futures missions satellitaires à haute résolution, comme SWOT. / Subsurface-intensified vortices are ubiquitous in the world ocean. They are often generated by water mass exchanges between semi-closed evaporation basins (e.g.: Mediterranean Sea, Red Sea, Persian Gulf) and the open ocean or during deep convection processes. These vortices can maintain a coherent geometry during inter-annual timescales and, due to their migration, they are able to carry large amounts of heat, salt and nutrients. Hence, the class of subsurface-intensified vortices participates to the redistribution of oceanic tracers along the three dimensions and at global scale, justifying the interest in determining their positions and mean pathways in the ocean. In general, vortices are able to locally modify the ocean surface generating anomalies that allow one to track them via satellite sensors. Our study, based on the use of analytical and numerical models, deals with the characterization of the sea-surface anomalies generated by subsurface-intensified vortices in terms of Sea-Surface Height (the elevation of the oceanic free-surface, SSH), Sea-Surface Temperature (SST) and Sea-Surface Salinity (SSS).In a first analysis, we have studied the SSH anomalies generated by subsurface vortices in an idealized context. Their properties have been related to the three-dimensional structure of the vortex, allowing us to state that only subsurface mesoscale vortices can be detected by the presentday altimetric observations. Furthermore, using a realistic model, we have studied the sea-surface expression of Mediterranean Water Eddies (MEDDIES) in SSH, SST and SSS. The study has evidenced the main differences between the Meddies-induced SSH anomalies and their thermohaline surface anomalies (i.e., SST and SSS): the first exhibit horizontal structures and intensities that can always be related to the Meddy structural changes at depth, while the second are mostly driven by the local surface dynamics.These studies show that the automatic tracking of subsurface-intensified vortices is mostly possible in an altimetric perspective, further confirming the importance of future high-resolution altimetric satellite missions, like SWOT.

Thesis (S.M.)--Joint Program in Physical Oceanography (Massachusetts Institute of Technology, Dept. of Earth, Atmospheric, and Planetary Sciences and the Woods Hole Oceanographic Institution), 2000. / Includes bibliographical references (p. 65-67). / With Lagrangian and hydrographic data taken in the deep Brazil Basin, we identify several submesoscale coherent vortices (SCVs). These features contrast with SCV paradigms in that float data indicate approximately equal populations of cyclonic and anticyclonic vortices, and hydrographic data suggest that roughly half exhibit the convex lens shape generally associated with SCVs, while half are instead shaped like a concave lens, with isopycnal surfaces pinched together. There is some evidence that the vortex cores may be enriched in warm, salty North Atlantic Deep Water, suggesting formation in the north or northwest regions of the basin. Data is available from 153 floats which were ballasted for 2500 and 4000 db pressures. They tracked 34 eddies, which are believed to be roughly 30 km in diameter, and rotate with apparent periods of about 30 days. Many floats experienced formation or entrainment events, and destruction or detrainment events, near seamounts. / by Patricia Kassis. / S.M.

Thesis: Ph. D., Joint Program in Applied Ocean Science and Engineering (Massachusetts Institute of Technology, Department of Earth, Atmospheric, and Planetary Sciences; and the Woods Hole Oceanographic Institution), 2018. / Cataloged from PDF version of thesis. / Includes bibliographical references (pages 138-154). / Highly migratory marine fishes support valuable commercial fisheries worldwide. Yet, many target species have proven difficult to study due to long-distance migrations and regular deep diving. Despite the dominance of oceanographic features, such as fronts and eddies, in the open ocean, the biophysical interactions occurring at the oceanic (sub)mesoscale (< 100 km) remain poorly understood. This leads to a paucity of knowledge on oceanographic associations of pelagic fishes and hinders management efforts. With ever-improving oceanographic datasets and modeling outputs, we can leverage these tools both to derive better estimates of animal movements and to quantify fish-environment interactions. In this thesis, I developed analytical tools to characterize the biophysical interactions influencing animal behavior and species' ecology in the open ocean. A novel, observation-based likelihood framework was combined with a Bayesian state-space model to improve geolocation estimates for archival-tagged fishes using oceanographic profile data. Using this approach, I constructed track estimates for a large basking shark tag dataset using a high-resolution oceanographic model and discovered a wide range of movement strategies. I also applied this modeling approach to track archival-tagged swordfish, which revealed affinity for thermal front and eddy habitats throughout the North Atlantic that was further corroborated by synthesizing these results with a fisheries-dependent conventional tag dataset. An additive modeling approach applied to longline catch-per-unit effort data further highlighted the biophysical interactions that characterize variability in swordfish catch. In the final chapter, I designed a synergistic analysis of high-resolution, 3D shark movements and satellite observations to quantify the influence of mesoscale oceanography on blue shark movements and behavior. This work demonstrated the importance of eddies in structuring the pelagic ocean by influencing the movements of an apex predator and governing the connectivity between deep scattering layer communities and deep-diving, epipelagic predators. Together, these studies demonstrate the breadth and depth of information that can be garnered through the integration of traditional animal tagging and oceanographic research with cutting-edge analytical approaches and high-resolution oceanographic model and remote sensing datasets, the product of which provides a transformative view of the biophysical interactions occurring in and governing the structure of the pelagic ocean. / by Camrin Donald Braun. / Ph. D.

Tropical cyclones (TCs) often change intensity as they move over mesoscale oceanic features, as a function of the oceanic mixed layer (OML) thermal response (cooling) to the storm's wind stress. For example, observational evidence indicates that TCs in the Gulf of Mexico rapidly weaken over cyclonic cold core eddies (CCEs) where the cooling response is enhanced, and they rapidly intensify over anticyclonic warm features such as the Loop Current (LC) and Warm Core Eddies (WCEs) where OML cooling is reduced. Understanding this contrasting thermal response has important implications for oceanic feedback to TCs' intensity in forecasting models. Based on numerical experimentation and data acquired during hurricanes Katrina and Rita, this dissertation delineates the contrasting velocity and thermal response to TCs in mesoscale oceanic eddies. Observational evidence and model results indicate that, during the forced stage, the wind-driven horizontal current divergence under the storm's eye is affected by the underlying geostrophic circulation. Upwelling (downwelling) regimes develop when the wind stress vector is with (against) the geostrophic OML velocity vector. During the relaxation stage, background geostrophic circulations modulate vertical dispersion of OML near-inertial energy. The near-inertial velocity response is subsequently shifted toward more sub-inertial frequencies inside WCEs, where rapid vertical dispersion prevents accumulation of kinetic energy in the OML that reduces vertical shears and layer cooling. By contrast, near-inertial oscillations are vertically trapped in OMLs inside CCEs that increases vertical shears and entrainment. Estimates of downward vertical radiation of near-inertial wave energies were significantly stronger in the LC bulge (12.1X10 super -2 W m super -2) compared to that in CCEs (1.8X10 super -2 W m super -2). The rotational and translation properties of the geostrophic eddies have an important impact on the internal wave wake produced by TCs. More near-inertial kinetic energy is horizontally trapped in more rapidly rotating eddies. This response enhances vertical shear development and mixing. Moreover, the upper ocean temperature anomaly and near-inertial oscillations induced by TCs are transported by the westward-propagating geostrophic eddies. From a broader perspective, coupled models must capture oceanic features to reproduce the differentiated TC-induced OML cooling to improve intensity forecasting.

The objective of this dissertation is to gain a better understanding of the environmental and climatic effects on the temporal and spatial variability of phytoplankton biomass along the West Florida Shelf. Chapter 1 examines temporal and spatial patterns in chlorophyll concentrations using satellite data collected between 1997 and 2003. Chlorophyll data derived from the SeaWiFS sensor are validated with in-situ data and analyzed. Wind, current, sea surface temperature, river, and rain data are used to better understand the factors responsible for the patterns observed in the satellite data. My question is whether the standard OC4 algorithm is adequate for studying short-term variability of chlorophyll concentrations along the WFS. I will examine temporal and spatial trends using the OC4 and compare them to the Carder semianalytical algorithm which uses remote sensing reflectances at 412nm, 443nm, 490nm,and 555nm to estimate chlorophyll concentrations separately from CDOM estimates. In Chapters 2 and 3 the potential problems due to CDOM and bottom reflectance are examined. In Chapter 2 I analyze the influence of riverine induced CDOM. Water leaving radiances are analyzed in an effort to discriminate true chlorophyll patterns from CDOM contaminated signals. Chapter 3 examines the impact of bottom reflectance on the satellite signal by using the percentage of remote sensing reflectance at a wavelength of 555 to differentiate between optically shallow waters and optically deep waters. Optically shallow waters are defined as those with the percentage of Rrs at 555 due to bottom reflectance greater than or equal to 25 percent, while optically deep waters have percent bottom reflectance less than or equal to 25 percent. These analyses will help assess the validity of the temporal and spatial patterns ofchlorophyll concentration observed with the SeaWiFS data described in Chapter 1.

Understanding the interactions between ocean and atmosphere in regions of oceanographic fronts is of vital importance for the improvement of numerical models for weather and climate forecasting. In the South Atlantic Ocean (SAO) the meeting between the warm waters of the Brazil Current (BC) and the cold waters of the Malvinas (Falkland) Current (MC) in the region known as the Brazil-Malvinas Confluence (BMC), results in intense mesoscale oceanic activity and, for this reason, this region is considered one of the most energetic of the Global Ocean. The interactions resulting from the thermal contrast in regions oceanographic fronts of the OAS are investigated in this work through estimates of heat fluxes based on data collected in situ and by satellite. The results of this study show that the response to the thermal contrasts found in the ocean is in the form of heat fluxes and these fluxes are critical in modulating the atmospheric boundary layer (ABL). Estimation based on data collected in situ show that in the warm side (north) of the oceanographic front the fluxes are more intense (latent heat: 62 W/m² and sensible heat: 0.6 W/m²) than in the cold side (south) (latent heat: 5.8 W/m² and sensible heat: -13.8 W/m²). In the South Atlantic Current (SAC) along the 30° S parallel, heat fluxes are directly related to the meandering characteristic of the current. The data collected in situ, in addition to allow heat flux estimates at a better spatial resolution, were used to develop a new method for estimating the heat energy exchanged between the atmosphere and the ocean caused by the presence of mesoscale oceanic structures. This methodology consists in the comparison of a radiosonde profile taken over waters of the structure of interest and another taken over waters which do not belong to this structure. The methodology was used to estimate the heat energy transfer between the atmosphere and the ocean over the top of three structures sampled in the OAS. The estimation of the heat energy transferred by a warm eddy detached from the BC points to an energy in the latent (sensible) form of 1.6 1017 J (-2.8 1016 J) which corresponds to approximately 0.011 % of the total heat energy of the eddy transferred to the atmosphere during the field experiment and 0.78 % transferred during the supposed lifetime of the eddy (3 months). Along the CSA two oceanic structures were studied: (i) a cold meander that receives from the atmosphere energy in the latent (sensible) form of 1.4 106 J/m2 (5.4 105 J/m2), and (ii) warmer waters associated with a detached eddy from the Agulhas Current (AC) that transfer to the atmosphe heat energy of approximately 4 106 J/m2 an 5.7 106 J/m2 in the latent and sensible forms, respectively. The estimation of heat energy transfer on top of mesoscale oceanic structures clearly demonstrate the importance of these structures for the heat exchanges between the ocean and the atmosphere and must be taken into account in future works about this subject in the SAO. / A compreensão das interações entre oceano e atmosfera em regiões de frentes oceanográficas é de vital importância para o melhoramento de modelos numéricos de previsão do tempo e clima. No Oceano Atlântico Sul (OAS) o encontro entre as águas quentes da Corrente do Brasil (CB) com as águas frias da Corrente das Malvinas (CM), na região denominada Confluência Brasil-Malvinas (CBM), resulta em intensa atividade oceânica de mesoescala e, por esse motivo, essa região é considerada uma das mais energéticas do Oceano Global. As interações resultantes do contraste termal ao longo de regiões de frentes oceanográficas no OAS são investigadas neste trabalho através de estimativas de fluxos de calor baseadas em dados de satélite e dados coletados in situ. Os resultados do trabalho demonstram que a resposta aos contrastes termais encontrados no oceano se dá na forma de fluxos de calor e que esses fluxos são fundamentais na modulação da Camada Limite Atmosférica (CLA). As estimativas com base em dados coletados in situ demonstram que no lado quente (norte) da frente oceanográfica os fluxos são mais intensos (calor latente: 62 W/m² e calor sensível: 0,6 W/m²) que nos lado frio (sul) (calor latente: 5,8 W/m² e calor sensível: -13,8 W/m²). Na Corrente Sul Atlântica (CSA), ao longo do paralelo de 30° S, os fluxos de calor estão diretamente relacionados a característica meandrante da corrente. Os dados coletados in situ, além de possibilitarem estimativas de fluxo de calor com uma melhor resolução espacial, foram usados no desenvolvimento de uma nova metodologia para estimativa da energia calorífica trocada entre oceano e atmosfera em virtude da presença de estruturas oceânicas de mesoescala. Essa metodologia consiste na comparação entre um perfil de radiossonda tomado sobre águas da estrutura de interesse e outro tomado sobre águas que não pertencem a essa estrutura. A metodologia desenvolvida foi utilizada para determinar a transferência de energia calorífica entre oceano e atmosfera em três estruturas amostradas no OAS. A estimativa da energia calorífica transferida por um vórtice quente desprendido da CB aponta para uma energia na forma latente (sensível) de 1,6 1017 J (-2,8 1016 J) que corresponde a aproximadamente 0,011 % da energia calorífica total do vórtice transferida durante o experimento de campo e de 0,78 % da energia do vórtice transferidos durante o tempo suposto de vida do vórtice (3 meses). Ao longo da CSA, duas estruturas oceânicas foram estudadas: (i) um meandro frio que recebe da atmosfera uma energia na forma latente (sensível) de 1,4 106 J/m2 (5,4 105 J/m2) e (ii) águas mais quentes associadas a um vórtice desprendido da Corrente das Agulhas (CA) que transferem para a atmosfera uma energia calorífica de aproximadamente 4 106 J/m2 e 5,7 106 J/m2 nas formas latente e sensível, respectivamente. As estimativas da transferência de energia calorífica sobre estruturas oceânicas de mesoescala demonstram claramente a importância destas nas trocas de calor entre o oceano e a atmosfera e devem ser levadas em consideração em trabalhos futuros sobre o tema no OAS.

Thesis (Ph.D.)--Joint Program in Physical Oceanography (Massachusetts Institute of Technology, Dept. of Earth, Atmospheric, and Planetary Sciences and the Woods Hole Oceanographic Institution), 2000. / Includes bibliographical references (p. 284-290). / by Brian Kenneth Arbic. / Ph.D.

Cette thèse a pour objet la simulation d'une zone de mélange turbulente issue de l'instabilité de Richtmyer-Meshkov à l'aide d'un modèle à fonction de densité de probabilité (PDF). Nous analysons plus particulièrement la prise en charge par le modèle PDF du transport de l'énergie cinétique turbulente dans la zone de mélange.Dans cette optique, nous commençons par mettre en avant le lien existant entre les statistiques en un point de l'écoulement et ses conditions initiales aux grandes échelles. Ce lien s'exprime à travers le principe de permanence des grandes échelles, et permet d'établir des prédictions pour certaines grandeurs de la zone de mélange, telles que son taux de croissance ou son anisotropie.Nous dérivons ensuite un modèle PDF de Langevin capable de restituer cette dépendance aux conditions initiales. Ce modèle est ensuite validé en le comparant à des résultats issus de simulations aux grandes échelles (LES).Enfin, une analyse asymptotique du modèle proposé permet d'éclairer notre compréhension du transport turbulent. Un régime de diffusion est mis en évidence, et l'expression du coefficient de diffusion associé à ce régime atteste l'influence de la permanence des grandes échelles sur le transport turbulent.Tout au long de cette thèse, nous nous sommes appuyés sur des résultats issus de simulations de Monte Carlo du modèle de Langevin. A cet effet, nous avons développé une méthode spécifique eulérienne et à l'avons comparé à des alternatives lagrangiennes. / The aim of the thesis is to simulate a turbulent mixing zone resulting from the Richtmyer-Meshkov instability using a probability density function (PDF) model. An emphasis is put on the analysis of the turbulent kinetic energy transport.To this end, we first highlight the link existing between the one-point statistics of the flow and its initial conditions at large scales. This link is expressed through the principle of permanence of large eddies, and allows to establish predictions for quantities of the mixing zone, such as its growth rate or its anisotropy.We then derive a Langevin PDF model which is able to reproduce this dependency of the statistics on the initial conditions. This model is then validated by comparing it against large eddy simulations (LES).Finally, an asymptotic analysis of the derived model helps to improve our understanding of the turbulent transport. A diffusion regime is identified, and the expression of the diffusion coefficient associated with this regime confirms the influence of the permanence of large eddies on the turbulent transport.Throughout this thesis, our numerical results were based on Monte Carlo simulations for the Langevin model. In this regard, we proceeded to the development of a specific Eulerian method and its comparison with Lagrangian counterparts.

L’étude des processus physiques d’un système d’upwelling est essentielle pour comprendre sa variabilité actuelle et ses changements passés et futurs. Cette thèse présente une étude interdisciplinaire du système d’upwelling côtier à partir de différentes données acquises par satellite, l’accent étant mis principalement sur le système d’upwelling d’Afrique du Nord-Ouest (NWA). Cette étude interdisciplinaire aborde (1) le problème de l’identification et de l’extraction automatiques du phénomène d’upwelling à partir d’observations satellitaires biologiques et physiques. (2) Une étude statistique de la variation spatio-temporelle de l’upwelling de la NWA tout au long de son extension et de ses différents indices d’upwelling. (3) Une étude des relations non linéaires entre le mélange de surface et l’activité biologique dans les régions d’upwelling. (4) études lagrangiennes de tourbillons cohérents; leurs propriétés physiques et identification automatique. (5) L’étude des transports effectués par les tourbillons lagrangiens de la NWA Upwelling et leur impact sur l’océan. / Studying physical processes of an upwelling system is essential to understand its present variability and its past and future changes. This thesis presents an interdisciplinary study of the coastal upwelling system from different satellite acquired data, with the main focus placed on the North West African (NWA) upwelling system. This interdisciplinary study covers (1) the problem of the automatic identification and extraction of the upwelling phenomenon from biological and physical satellite observations. (2) A statistical study of the spatio-temporal variation of the NWA upwelling throughout its extension and different upwelling indices. (3) A Study of the nonlinear relationships between the surface mixing and biological activity in the upwelling regions. (4) Lagrangian studies of coherent eddies; their physical properties and automatic identification. (5) The study of transport made by Lagrangian eddies off the NWA Upwelling and their impact on the open ocean. [...]

In non-rotating fluids, boundary-layer separation occurs when the nearly inviscid flow just outside a viscous boundary-layer experiences an appreciable deceleration due to a region of adverse pressure gradient. The fluid ceases to flow along the boundary due to a flow recirculation region close to the boundary. The flow is then said to be "detached." In recent decades, attention has shifted to the study of boundary-layer separation in a rotating reference frame due to its significance in Geophysical Fluid Dynamics (GFD). Since the Earth is a rotating sphere, the so-called β-plane approximation f = f0 + βy is often used to account for the inherent meridional variation of the Coriolis parameter, f, while still solving the governing equations on a plane. Numerical simulations of currents on the β-plane have been useful in understanding ocean currents such as the Gulf Stream, the Brazil Current, and the Antarctic Circumpolar Current to name a few. In this thesis, we first consider the problem of prograde flow past a cylindrical obstacle on the β-plane. The problem is governed by the barotropic vorticity equation and is solved using a numerical method that is a combination of a finite difference method and a spectral method. A modified form of the β-plane approximation is proposed to avoid computational difficulties. Results are given and discussed for flow past a circular cylinder at selected Reynolds numbers (Re) and non-dimensional β-parameters (β^). Results are then given and discussed for flow past an elliptic cylinder of a fixed aspect ratio (r = 0.2) and at two angles of inclination (90°, 15°) at selected Re and β^. In general, it is found that the β-effect acts to suppress boundary-layer separation and to allow Rossby waves to form in the exterior flow field. In the asymmetrical case of an inclined elliptic cylinder, the β-effect was found to constrain the region of vortex shedding to a small region near the trailing edge of the cylinder. The shed vortices were found to propagate around the trailing edge instead of in the expected downstream direction, as observed in the non-rotating case. The second problem considered in this thesis is the separation of western boundary currents from a curved coastline. This problem is also governed by the barotropic vorticity equation, and it is solved on an idealized model domain suitable for investigating the effects that boundary curvature has on the tendency of a boundary current to separate. The numerical method employed is a two-dimensional Chebyshev spectral collocation method and yields high order accuracy that helps to better resolve the boundary-layer dynamics in comparison to low-order methods. Results are given for a selection of boundary curvatures, non-dimensional β-parameters (β^), Reynolds numbers (Re), and Munk Numbers (Mu). In general, it is found than an increase in β^ will act to suppress boundary-layer separation. However, a sufficiently sharp obstacle can overcome the β-effect and force the boundary current to separate regardless of the value of β^. It is also found that in the inertial limit (small Mu, large Re) the flow region to the east of the primary boundary current is dominated by strong wave interactions and large eddies which form as a result of shear instabilities. In an interesting case of the inertial limit, strong waves were found to interact with the separation region, causing it to expand and propagate to the east as a large eddy. This idealized the mechanism by which western boundary currents such as the Gulf Stream generate eddies in the world's oceans.