Habitat loss and human-caused mortality are the most serious threats facing grizzly bear (<i>Ursus arctosi</i> L.) populations in Alberta, with conflicts between people and bears in agricultural areas being especially important. For this reason, information is needed about grizzly bears in agricultural areas. The objectives of this research were to find the best possible classification approach for determining multiple classes of agricultural and herbaceous land cover for the purpose of grizzly bear habitat mapping, and to determine what, if any, spatial and compositional components of the landscape affected the bears in these agricultural areas. Spectral and environmental data for five different land-cover types of interest were acquired in late July, 2007, from Landsat Thematic Mapper satellite imagery and field data collection in two study areas in Alberta. Three different classification methods were analyzed, the best method being the Supervised Sequential Masking (SSM) technique, which gave an overall accuracy of 88% and a Kappa Index of Agreement (KIA) of 83%. The SSM classification was then expanded to cover 6 more Landsat scenes, and combined with bear GPS location data. Analysis of this data revealed that bears in agricultural areas were found in grasses / forage crops 77% of the time, with small grains and bare soil / fallow fields making up the rest of the visited land-cover. Locational data for 8 bears were examined in an area southwest of Calgary, Alberta. The 4494 km2 study area was divided into 107 sub-landscapes of 42 km2. Five-meter spatial resolution IRS panchromatic imagery was used to classify the area and derive compositional and configurational metrics for each sub-landscape. It was found that the amount of agricultural land did not explain grizzly bear use; however, secondary effects of agriculture on landscape configuration did. High patch density and variation in distances between neighboring similar patch types were seen as the most significant metrics in the abundance models; higher variation in patch shape, greater contiguity between patches, and lower average distances between neighboring similar patches were the most consistently significant predictors in the bear presence / absence models. Grizzly bears appeared to prefer areas that were structurally correlated to natural areas, and avoided areas that were structurally correlated to agricultural areas. Grizzly bear presence could be predicted in a particular sub-landscape with 87% accuracy using a logistic regression model. Between 30% and 35% of the grizzlies‟ landscape scale habitat selection was explained.

Habitat loss and human-caused mortality are the most serious threats facing grizzly bear (<i>Ursus arctosi</i> L.) populations in Alberta, with conflicts between people and bears in agricultural areas being especially important. For this reason, information is needed about grizzly bears in agricultural areas. The objectives of this research were to find the best possible classification approach for determining multiple classes of agricultural and herbaceous land cover for the purpose of grizzly bear habitat mapping, and to determine what, if any, spatial and compositional components of the landscape affected the bears in these agricultural areas. Spectral and environmental data for five different land-cover types of interest were acquired in late July, 2007, from Landsat Thematic Mapper satellite imagery and field data collection in two study areas in Alberta. Three different classification methods were analyzed, the best method being the Supervised Sequential Masking (SSM) technique, which gave an overall accuracy of 88% and a Kappa Index of Agreement (KIA) of 83%. The SSM classification was then expanded to cover 6 more Landsat scenes, and combined with bear GPS location data. Analysis of this data revealed that bears in agricultural areas were found in grasses / forage crops 77% of the time, with small grains and bare soil / fallow fields making up the rest of the visited land-cover. Locational data for 8 bears were examined in an area southwest of Calgary, Alberta. The 4494 km2 study area was divided into 107 sub-landscapes of 42 km2. Five-meter spatial resolution IRS panchromatic imagery was used to classify the area and derive compositional and configurational metrics for each sub-landscape. It was found that the amount of agricultural land did not explain grizzly bear use; however, secondary effects of agriculture on landscape configuration did. High patch density and variation in distances between neighboring similar patch types were seen as the most significant metrics in the abundance models; higher variation in patch shape, greater contiguity between patches, and lower average distances between neighboring similar patches were the most consistently significant predictors in the bear presence / absence models. Grizzly bears appeared to prefer areas that were structurally correlated to natural areas, and avoided areas that were structurally correlated to agricultural areas. Grizzly bear presence could be predicted in a particular sub-landscape with 87% accuracy using a logistic regression model. Between 30% and 35% of the grizzlies‟ landscape scale habitat selection was explained.

With an increase in demand on deep-sea resources comes a need for appropriate and effective management of this ecosystem. The establishment of a representative network of deep-sea Marine Protected Areas offers one tool with which to address the conservation needs of the deep sea. While a number of deep-sea habitats have been identified as vulnerable to anthropogenic activities (e.g. cold-water coral reefs and sponge aggregations), poor knowledge of the distribution of these habitats hinders conservation efforts and network planning, and thus we need habitat maps. With improvements in acoustic data resolution acquired from the deep sea, and the ability to cover large areas rapidly, the use of acoustic techniques in mapping biological habitats is growing. Multibeam bathymetry and its derived terrain variables can potentially provide important information that can aid in the delineation and characterisation of biological communities. A necessary prelude to mapping is therefore the definition of biological assemblages for use as mapping units. Two megahabitat features (seamount and submarine canyons) were sampled using acoustic and ground-truthing to characterise and map the distribution of benthic assemblages. Species were identified as distinct morpho-types and catalogued, and still images quantitatively analysed. Standard multivariate community analysis was undertaken to define distinct faunal assemblage that may act as mapping units. Those clusters identified by the SIMPROF routine were taken against a set of criteria to reject/accept as robust assemblages that may be used as mapping units. Twenty two benthic assemblages or biotopes were defined from multivariate analysis of quantitative species data, 11 from the SW Approaches and 11 from Anton Dohrn Seamount, and a further one from video observations (SW Approaches). Taken against current definitions, 11 of these were considered as Vulnerable Marine Ecosystems (VME). Diversity was measured to compliment the comprehensive description of biotopes. The use of multivariate diversity indices proved better for comparing diversity of biotopes as it captures a more than one aspect of diversity of the community. Two biotopes were common to both megahabitat features, cold-water coral reef habitats, and those from Anton Dohrn Seamount were more diverse than from the SW Approaches. Modelling techniques were employed to test the relationship between biotopes and environmental and geophysical parameters, which may be used as surrogates to map VME. Generalised Additive Models of Vulnerable Marine Ecosystems revealed multibeam bathymetry and its derived parameters to be significant surrogate for mapping the distribution of some assemblages, particularly those that appear to be influenced by current regime; whilst not so well for those whose distribution is not so strongly current driven e.g. soft sediment communities. In terms of deep-sea mapping, the use of multibeam can prove a useful mapping tool if the resolution of the data is at an appropriate scale that will identify meso-scale geomorphological features, such as cliff-top mounds, that may act as proxies for occurrence of biotopes, but this relationship is still unclear. Surrogates were used to map VME across the seamount and submarine canyons, and full coverage maps were produced for all biotopes occurring on these megahabitat features.

The native Eurasian red squirrel is considered endangered in the UK and is under strict legal protection. Long-term management of its habitat is a key goal of the UK conservation strategy. Current selection criteria of reserves and subsequent management mainly consider species composition and food availability. However, there exists a critical gap in understanding and quantifying the relationship between squirrel abundance, their habitat use and forest structural characteristics. This has partly resulted from the limited availability of structural data along with cost-efficient data collection methods. This study investigated the relationship between squirrel feeding activity and structural characteristics of Scots pine forests. Field data were collected from two study areas: Abernethy and Aberfoyle Forests. Canopy closure, diameter at breast height, height and number of trees were measured in 56 plots. Abundance of squirrel feeding signs was used as an index of habitat use. A GLM was used to model the response of cones stripped by squirrels in relation to the field collected structural variables. Results show that forest structural characteristics are significant predictors of feeding sign presence, with canopy closure, number of trees and tree height explaining 43% of the variation in stripped cones. The GLM was also implemented using LiDAR data to assess at wider scales the number of cones stripped by squirrels. The use of remote sensing -in particular Light Detection and Ranging (LiDAR) - enables cost efficient assessments of forest structure at large scales and can be used to retrieve the three variables explored in this study; canopy cover, tree height and number of trees, that relate to red squirrel feeding behaviour. Correlation between field-predicted and LiDAR-predicted number of stripped cones was performed to assess LiDAR-based model performance. LiDAR data acquired at Aberfoyle and Abernethy Forests had different characteristics (in particular pulse density), which influences the accuracy of LiDAR derived metrics. Therefore correlations between field predicted and LiDAR predicted number of cones (LSC) were assessed for each study area separately. Strong correlations (rs=0.59 for Abernethy and 0.54 for Aberfoyle) suggest that LiDAR-based model performed relatively well over the study areas. The LiDAR-based model was not expected to provide absolute numbers of cones stripped by squirrels but a relative measure of habitat use. This can be interpreted as different levels of habitat suitability for red squirrels. LiDAR-based GLM maps were classified into three levels of suitability: unsuitable (LSC = 0), Low (LSC < 10) and Medium to High Suitability (LSC >=10). These thresholds were defined based on expert knowledge. Such a classification of habitat suitability allows for further differentiation of habitat quality for red squirrels and therefore for a refined estimation of the carrying capacity that was used to inform population viability analysis (PVA) at Abernethy Forest. PVA assists the evaluation of the probability of a species population to become extinct over a specified period of time, given a set of data on environmental conditions and species characteristics. In this study, two scenarios were modelled in a PVA package (VORTEX). For the first scenario (Basic) carrying capacity was calculated for the whole forest, while for the second scenario (LiDAR) only Medium-to-High suitable patches were considered. Results suggest a higher probability of extinction for the LiDAR scenario (74%) than for the Basic scenario (55%). Overall the findings of this study highlight 1) the importance of considering forest structure when managing habitat for squirrel conservation and 2) the usefulness of LiDAR remote sensing as a tool to assist red squirrel, and potentially other species, habitat management.

Kelp beds support a vast and diverse ecosystem including marine mammals, fish, invertebrates, other algae and epibiota, yet these kelp beds can be highly ephemeral. Mapping the density and distribution of kelp beds, and assessing change over yearly cycles, are important objectives for coastal oceanography. However, nearshore habitat mapping is challenging, affected by dynamic currents, tides, shallow depths, frequent non-uniform obstacles and often turbid water. Noisy and often incomplete sensor data compound a lack of landmarks available for navigation. The intelligent, position-aware holonomic ROV (iROV) SeaBiscuit was designed specifically for this nearshore habitat mapping application and represents a novel synthesis of techniques and innovative solutions to nearshore habitat mapping. The concept of an iROV combines the benefits of autonomous underwater navigation and mapping while maintaining the flexibility and security of remote high-level control and supervision required for operation in hostile, complex underwater environments. An onboard battery provides an energy buffer for high-powered thrust and security of energy supply. Onboard low-level autonomy provides robust autopilot features, including station-keeping or course-holding in a flow, allowing the operator to direct the survey and supervise mapping data in realtime during acquisition. With the aim of providing high-usability maps on a budget feasible for small-scale field research groups, SeaBiscuit fuses the data from an orthogonal arrangement of a forward-facing multibeam sonar and a complementary 360° scanning sonar with a full navigation suite to explore and map the nearshore environment. Sensor fusion, coupled with the holonomic propulsion system, also allows optimal use of the information available from the limited budget sensor suite. Robust and reliable localisation is achieved even with noisy and incomplete sensor data using a relatively basic Inertial Navigation System and sonar-aided SLAM in the absence of an expensive Doppler velocity log or baseline navigation system. Holonomic motion in the horizontal plane and an axisymmetric hull provide the manoeuvrability required to operate in this complex environment, while allowing 3D maps to be generated in-transit. The navigation algorithms were tested mapping a piling dock and the habitat mapping sensors calibrated using an ‘artificial’ kelp bed of manually dimensioned kelp stipes transplanted to a sheltered but open-water real-world environment. Sea trials demonstrated mapping open ocean kelp beds, identifying clusters of stipes, converting this into a useful measure of biomass and generating a density surface across the kelp bed. This research provides field-proven techniques to improve the nearshore habitat mapping capabilities of underwater vehicles. Future work includes the transition to full-scale kelp bed mapping, and further development of the vehicle and sensor fusion algorithms to improve nearshore navigation.

Wildlife habitat mapping strongly supports applications in natural resource management, environmental conservation, impacts of anthropogenic activity, perturbed ecosystem restoration, species-at-risk recovery and species inventory. Remote sensing has long been identified as a feasible and effective technology for large-area wildlife habitat mapping. However, existing and future uncertainties in remote sensing will definitely have a significant effect on relevant scientific research, such as the limitation of Landsat-series data; the negative impact of cloud and cloud shadows (CCS) in optical imagery; and landscape pattern analysis using remote sensing classification products. This thesis adopted a manuscript-style format; it addresses these challenges (or uncertainties) and opportunities through exploring the state-of-the-art optical and radar remotely sensed data for large-area wildlife habitat mapping, and investigating their feasibility and applicability primarily by comparison either on the level of direct remote sensing products (e.g. classification accuracy) or indirect ecological model (e.g. presence/absence and frequency of use model based on landscape pattern analysis). A framework designed to identify and investigate the potential remotely sensed data, including Disaster Monitoring Constellation (DMC), Landsat Thematic Mapper (TM), Indian Remote Sensing (IRS), and RADARSAT-2, has been developed. The chosen DMC and RADARSAT-2 imagery have acceptable capability of addressing the existing and potential challenges (or uncertainties) in remote sensing of large-area habitat mapping, in order to produce cloud-free thematic maps for the study of wildlife habitat. A quantitative comparison between Landsat-based and IRS-based analyses showed that the characteristics of remote sensing products play an important role in landscape pattern analysis to build grizzly bear presence/absence and frequency of use models.

A framework designed to guide the effective use of remote sensing in large-area, multi-jurisdictional habitat mapping studies has been developed. Based on hierarchy theory and the remote sensing scene model, the approach advocates (i) identifying the key physical attributes operating on the landscape; (ii) selecting a series of suitable remote sensing data whose spatial, spectral, radiometric, and temporal characteristics correspond to the attributes of interest; and (iii) applying an intelligent succession of scale-sensitive data processing techniques that are capable of delivering the desired information. The approach differs substantially from the single-map, classification-based strategies that have largely dominated the wildlife literature, and is designed to deliver a sophisticated, multi-layer information base that is capable of supporting a variety of management objectives. The framework was implemented in the creation of a multi-layer database composed of land cover, crown closure, species composition, and leaf area index (LAI) phenology over more than 100,000 km² in west-central Alberta. Generated through a combination of object-oriented classification, conventional regression, and generalized linear models, the products represent a high-quality, flexible information base constructed over an exceptionally challenging multi-jurisdictional environment. A quantitative comparison with two alternative large-area information sources&mdash;the Alberta Vegetation Inventory and a conventional classification-based land-cover map&mdash;showed that the thesis database had the highest map quality and was best capable of explaining both individual&mdash;and population-level resource selection by grizzly bears.

A framework designed to guide the effective use of remote sensing in large-area, multi-jurisdictional habitat mapping studies has been developed. Based on hierarchy theory and the remote sensing scene model, the approach advocates (i) identifying the key physical attributes operating on the landscape; (ii) selecting a series of suitable remote sensing data whose spatial, spectral, radiometric, and temporal characteristics correspond to the attributes of interest; and (iii) applying an intelligent succession of scale-sensitive data processing techniques that are capable of delivering the desired information. The approach differs substantially from the single-map, classification-based strategies that have largely dominated the wildlife literature, and is designed to deliver a sophisticated, multi-layer information base that is capable of supporting a variety of management objectives. The framework was implemented in the creation of a multi-layer database composed of land cover, crown closure, species composition, and leaf area index (LAI) phenology over more than 100,000 km² in west-central Alberta. Generated through a combination of object-oriented classification, conventional regression, and generalized linear models, the products represent a high-quality, flexible information base constructed over an exceptionally challenging multi-jurisdictional environment. A quantitative comparison with two alternative large-area information sources&mdash;the Alberta Vegetation Inventory and a conventional classification-based land-cover map&mdash;showed that the thesis database had the highest map quality and was best capable of explaining both individual&mdash;and population-level resource selection by grizzly bears.

Wildlife habitat mapping strongly supports applications in natural resource management, environmental conservation, impacts of anthropogenic activity, perturbed ecosystem restoration, species-at-risk recovery and species inventory. Remote sensing has long been identified as a feasible and effective technology for large-area wildlife habitat mapping. However, existing and future uncertainties in remote sensing will definitely have a significant effect on relevant scientific research, such as the limitation of Landsat-series data; the negative impact of cloud and cloud shadows (CCS) in optical imagery; and landscape pattern analysis using remote sensing classification products. This thesis adopted a manuscript-style format; it addresses these challenges (or uncertainties) and opportunities through exploring the state-of-the-art optical and radar remotely sensed data for large-area wildlife habitat mapping, and investigating their feasibility and applicability primarily by comparison either on the level of direct remote sensing products (e.g. classification accuracy) or indirect ecological model (e.g. presence/absence and frequency of use model based on landscape pattern analysis). A framework designed to identify and investigate the potential remotely sensed data, including Disaster Monitoring Constellation (DMC), Landsat Thematic Mapper (TM), Indian Remote Sensing (IRS), and RADARSAT-2, has been developed. The chosen DMC and RADARSAT-2 imagery have acceptable capability of addressing the existing and potential challenges (or uncertainties) in remote sensing of large-area habitat mapping, in order to produce cloud-free thematic maps for the study of wildlife habitat. A quantitative comparison between Landsat-based and IRS-based analyses showed that the characteristics of remote sensing products play an important role in landscape pattern analysis to build grizzly bear presence/absence and frequency of use models.

There is an increasing need for more detailed knowledge about the spatial distribution and structure of shallow water benthic habitats for marine conservation and planning. This, linked with improvements in hyperspectral image sensors provides an increased opportunity to develop new techniques to better utilise these data in marine mapping projects. The oligotrophic, optically-shallow waters surrounding Rottnest Island, Western Australia, provide a unique opportunity to develop and apply these new mapping techniques. The three flight lines of HyMap hyperspectral data flown for the Rottnest Island Reserve (RIR) in April 2004 were corrected for atmospheric effects, sunglint and the influence of the water column using the Modular Inversion and Processing System. A digital bathymetry model was created for the RIR using existing soundings data and used to create a range of topographic variables (e.g. slope) and other spatially relevant environmental variables (e.g. exposure to waves) that could be used to improve the ecological description of the benthic habitats identified in the hyperspectral imagery. A hierarchical habitat classification scheme was developed for Rottnest Island based on the dominant habitat components, such as Ecklonia radiata or Posidonia sinuosa. A library of 296 spectral signatures at HyMap spectral resolution (~15 nm) was created from >6000 in situ measurements of the dominant habitat components and subjected to spectral separation analysis at all levels of the habitat classification scheme. A separation analysis technique was developed using a multivariate statistical optimisation approach that utilised a genetic algorithm in concert with a range of spectral metrics to determine the optimum set of image bands to achieve maximum separation at each classification level using the entire spectral library. These results determined that many of the dominant habitat components could be separated spectrally as pure spectra, although there were almost always some overlapping samples from most classes at each split in the scheme. This led to the development of a classification algorithm that accounted for these overlaps. This algorithm was tested using mixture analysis, which attempted to identify 10 000 synthetically mixed signatures, with a known dominant component, on each run. The algorithm was applied directly to the water-corrected bottom reflectance data to classify the benthic habitats. At the broadest scale, bio-substrate regions were separated from bare substrates in the image with an overall accuracy of 95% and, at the finest scale, bare substrates, Posidonia, Amphibolis, Ecklonia radiata, Sargassum species, algal turf and coral were separated with an accuracy of 70%. The application of these habitat maps to a number of marine planning and management scenarios, such as marine conservation and the placement of boat moorings at dive sites was demonstrated.