La succinate déshydrogénase (SDH) est à la fois une enzyme clé du cycle de Krebs oxydant le succinate en fumarate et le complexe II de la chaîne respiratoire mitochondriale impliqué dans le transfert des électrons et la réduction de l’ubiquinone. Des inhibiteurs de cette enzyme (SDHI) ont été développés ou sont en cours de développement comme antifongiques. Cette famille de fongicides est notamment utilisée pour lutter contre Botrytis cinerea, champignon phytopathogène responsable de la pourriture grise sur de nombreuses cultures dont la vigne. Des souches résistantes aux SDHI ont été isolées chez B. cinerea et d’autres champignons phytopathogènes. Chez ces isolats résistants, des mutations ont été identifiées dans les gènes codant la SDH. Au cours de cette thèse, nous avons étudié l’impact de mutations affectant la sous-unité B (SdhB) de la succinate déshydrogénase sur l’activité de l’enzyme, la biologie du champignon B. cinerea et la résistance aux inhibiteurs ciblant cette enzyme. Par mutagénèse dirigée du gène sdhB, nous avons obtenu des mutants dits « isogéniques » qui ont permis de confirmer l’implication de ces mutations dans la résistance aux différentes molécules SDHI. Par ailleurs, nos résultats montrent que les modifications de la sous-unité SdhB affectent l’affinité des SDHI pour la SDH et les niveaux d’inhibition de l’activité SDH par les molécules inhibitrices ; ce qui explique - in fine - les spectres de résistance des mutants aux SDHI. Actuellement, tous les mutants sont résistants au boscalid et les mutants les plus fréquemment retrouvés au vignoble, sdhBH272R/Y, sont sensibles au fluopyram. Les travaux réalisés sur les mutants sdhB montrent que les mutations étudiées ont également un impact sur l’activité de l’enzyme et sur le développement du champignon, conséquences dépendantes du résidu substitué et de la substitution. En particulier, les mutations sdhBH272L/R affectent fortement l’activité de l’enzyme et la fitness du champignon alors que le mutant sdhBH272Y est peu affecté. Enfin, l’analyse de populations de pourriture grise de différentes origines (région, plantes hôtes) par rapport à la résistance aux SDHI réalisée sur les années 2009/2010 montre que les mutants sdhBH272R/Y sont toujours les plus fréquents mais leurs fréquences varient en fonction des situations agronomiques. Notamment la fréquence du mutant sdhBH272R augmente avec la pression de sélection exercée par les fongicides. Ce mutant attire particulièrement notre attention du fait de sa relation non linéaire entre fitness et fréquence au champ. / Succinate dehydrogenase is both a key enzyme of the TCA cycle, oxidizing succinate into fumarate and complex II of the mitochondrial respiratory chain involved in electron transfer and ubiquinone reduction. Inhibitors of this enzyme (SDHIs) have been developed or are in the developmental process as fungicides. Actually, SDHIs are registered to deal with Botrytis cinerea, a phytopathogenic fungus responsible for grey mold on many crops including grapevine. Strains of B. cinerea and other pathogenic fungi have been isolated for their resistance to SDHI. They mainly harbor mutations in genes encoding SDH subunits. During this thesis, we studied the impact of mutations modifying subunit B of succinate dehydrogenase on enzyme activity, fungal biology and resistance to SDHIs. “Isogenic” mutants obtained through site-directed mutagenesis and homologous recombination allowed us to confirm the role of sdhB mutations in SDHIs resistance. Our results also show that the substitutions in the SdhB subunit impact respectively the affinity of SDHIs to SDH and the inhibition levels of SDH activity by inhibitors, which explain – in fine – the resistance spectra observed for the mutants. Up to now, all sdhB mutants are resistant to boscalid and the most frequent mutants observed in grapevines, sdhBH272R/Y, are susceptible to fluopyram. Studies on sdhB mutants reveal that the mutations also impact the enzymatic activity and the fungal development depending on the substitution. In particular, sdhBH272L/R mutations have the strongest impact on enzyme activity and the fitness of the fungus, whereas these parameters are almost not altered in the sdhBH272Y mutant. Finally, grey mold populations from different origins (country, plant host) were analyzed for their SDHI resistance pheno- and genotypes. Yet, the sdhBH272R/Y mutants were the most frequent, but these frequencies varied according to the agronomical situation. Interestingly, the frequencies of the sdhBH272R mutant seem to increase with the selective pressure exerted by fungicides. This mutant is of particular interest because of the absence of correlation between the fitness we measured and the frequencies we observed in natura.

O Brasil é considerado o maior produtor de citros e o maior exportador de suco de laranja. Doenças de pós-colheita representam uma grande perda na citricultura, sendo que para muitos frutos a serem exportados, existe uma exigência para que os mesmos estejam isentos de resíduos químicos. Em relação a alguns patógenos de importância em pós-colheita podemos destacar, Guignardia citricarpa (Mancha-pretados- citros), Penicillium digitatum (Bolor-verde) e Colletotrichum gloeosporioides (Antracnose). Dada a importância econômica que representa esse complexo de doenças dos frutos cítricos, tanto em termos de comprometimento da qualidade dos frutos, limitações às exportações e dificuldade de controle, a busca de alternativas adicionais que possam viabilizar a capacidade produtiva dos produtores e garantir a obtenção de frutos com excelentes padrões de qualidade torna-se imprescindível. Nesse contexto, pode-se inserir o emprego de medidas de controle alternativas que não englobam o controle químico clássico. Sob esse ponto de vista inclui-se o controle através do uso de agentes bióticos e abióticos e a indução de resistência em plantas. Portanto neste trabalho, foi estudada a viabilidade do controle de doenças pós-colheita em citros, envolvendo a ação direta sobre os patógenos através do uso dos extratos etanólicos de albedo (mesocarpo) de laranja doce (Citrus sinensis var. Valência) e flavedo (exocarpo ou epicarpo) de limão-Tahiti (Citrus aurantifolia Swing var. Tahiti). O extrato do albedo apresentou efeito antifúngico sobre G. citricarpa e o flavedo do limão "Tahiti" sobre C. gloeosporioides, além de se demonstrar a existência de compostos voláteis com efeito tóxico. A segunda parte envolveu o controle e a indução de resistência em frutos, através do uso dos agentes bióticos Lentinula edodes e Agaricus blazei e do agente abiótico ácido jasmônico. Foi possível observar que o extrato aquoso do albedo (C. sinensis), flavedo (C. aurantifolia), L. edodes e A. blazei diminuíram o aparecimento de novas lesões causadas por G. citricarpa, porém não apresentaram efeitos sobre P. digitatum e C. gloeosporioides em frutos de C. sinensis var. Valência quando tratados em pós-colheita. Dessa maneira, no presente trabalho demonstrou-se a viabilidade de um possível controle alternativo de doenças pós-colheita em citros, buscando-se novos agentes que atuem como indutores de resistência ou de controle direto sobre os fitopatógenos. / Brazil is considered the biggest citrus producer and the biggest orange juice exporter. Post-harvest diseases represent a great loss in the citriculture, and for many fruits to be exported they should be free of chemical residues. In relation to some pathogens of importance in post-harvest it can be mentioned Guignardia citricarpa (black-spot-ofcitrus), Penicillium digitatum (green-mold) and Colletotrichum gloeosporioides (anthracnose). Because of the economical importance that represents this disease complex in citric fruits, in terms of compromising fruit quality, limitations to the exports and control difficulties, the search for alternative control measures that can make possible improve the producing capacity of the producers and the obtaining of fruits with excellent quality are indispensable. Thus, in this context it can be included measures of alternative control that do not include the chemical control. Under this point of view, control include the use of biotic and abiotic agents and the resistance induction in plants. Therefore, it was studied the viability of the control of post-harvest diseases in citrus, involving the direct action on the patogens by using ethanolic extracts of albedo (mesocarp) of sweet orange (Citrus sinensis var. Valência) and flavedo (exocarp or epicarp) of lemon-Tahiti (Citrus aurantifolia Swing var. Tahiti). The results showed that the extract of the albedo exhibited antifungal activity on G. citricarpa and the flavedo of the "Tahiti" lemon on C. gloeosporioides, and it was also demonstrated the existence of volatile compounds toxic to the fungus. The second part involved the control and resistance induction in the fruits, by using the biotic agents Lentinula edodes and Agaricus blazei and the abiotic agent jasmonic acid. It was possible to observe that the aqueous extracts from the albedo (C. sinensis), flavedo (C. aurantifolia), L. edodes and A. blazei reduced the formation of new lesions caused by G. citricarpa, however they did not exhibit effects on P. digitatum and C. gloeosporioides in fruits of C. sinensis var. Valência when treated in post-harvest. Thus, in the present work it was demonstrated the viability of possible alternative control measures of diseases in post-harvest of citrus, indicating the need of looking for new agents to act as resistance inducers or agents to directly control on the phytopathogens.

Submitted by Maike Costa (maiksebas@gmail.com) on 2017-09-06T12:24:40Z No. of bitstreams: 1 arquivototal.pdf: 1307797 bytes, checksum: 1ff0ad27389ffed5bd00e502e9eaedf8 (MD5) / Made available in DSpace on 2017-09-06T12:24:41Z (GMT). No. of bitstreams: 1 arquivototal.pdf: 1307797 bytes, checksum: 1ff0ad27389ffed5bd00e502e9eaedf8 (MD5) Previous issue date: 2016-04-27 / Coordenação de Aperfeiçoamento de Pessoal de Nível Superior - CAPES / Cherry tomato (Lycopersicon esculentum L.) fruit are higly perishable. The infection of cherry tomato fruit with the pathogenic fungi Aspergillus niger and Rhizopus stolonifer is associated with high postharvest losses and decreased quality during storage. This study evaluated the efficacy of an edible coating comprising chitosan (CHI; 4 mg/mL) and Origanum vulgare L. essential oil (OVEO; 1.25 μL/mL) for keeping the quality of cherry tomato fruit during storage at room (25 °C; 12 days) and cold (12 °C; 24 days) temperatures, considering the physical, physicochemical and sensory aspects. The minimum inhibitory concentrations (MIC) of CHI and OVEO were 4 mg/mL and 10 μL/mL respectively, against R. stolonifer and A. niger. The incorporation of CHI 4 mg/ml and OVEO 5 μL/mL, 2.5 μL/mL and 1.25 μL/mL in the growth media showed fungicidal effect and strongly inhibited the germination of spores, mycelial growth and sporulation of fungal strains test. CHI-OVEO coating reduced black mold and soft-rot incidence caused by these fungi in artificially contaminated cherry tomato fruit during storage at both temperatures. Fruit coated with CHI-OVEO showed higher firmness and lower weigth loss. CHI-OVEO coating delayed the decrease of lycopene, ascorbic and citric acid, glucose and fructose during storage at room or cold temperatures. Fruit coated with CHI-OVEO showed increased amounts of catechin, myricetin, caffeic and syringic acids at the end of storage. CHI-OVEO coating is a feasible treatment for keep the storage quality of cherry tomato fruit. These results indicate that the CHI-OVEO edible coating is a viable treatment for maintaining quality during storage cherry tomatoes. / Tomates cereja (Lycopersicon esculentum L.) são frutos altamente perecíveis. A contaminação destes frutos com os fungos patogênicos Aspergillus niger e Rhizopus stolonifer é associada à elevadas perdas pós-colheita e à redução da qualidade durante o armazenamento. Este estudo avaliou a eficácia de um revestimento comestível composto de quitosana (QUI; 4 mg/mL) e óleo essencial de Origanum vulgare L. (OEOV; 1.25 μL/mL) na manutenção da qualidade de frutos de tomate cereja durante o armazenamento em temperatura ambiente (25 °C; 12 dias) e refrigerada (12 °C; 24 dias) considerando os aspectos físicos, físico-químicos e sensoriais. A concentração inibitória mínima (CIM) da QUI e do OEOV foram 4 mg/mL e 10 μL/mL, respectivamente, contra R. stolonifer e A. niger. A incorporação de QUI a 4 mg/mL e OVEO a 5 μL/mL, 2,5 μL/mL e 1,25 μL/mL no meio de crescimento mostrou efeito fungicida e inibiu fortemente a germinação dos esporos, o crescimento micelial e esporulação das cepas teste. O revestimento de QUI-OEOV reduziu a incidência de bolor negro e podridão-mole causada por estes fungos em frutos de tomate cereja artificialmente contaminados durante o armazenamento em ambas as temperaturas estudadas. Frutos revestidos com QUI-OEOV mostraram maior firmeza e menor perda de peso. O revestimento de QUI-OEOV retardou a redução de licopeno, ácido ascórbico e cítrico, glicose e frutose durante o armazenamento em temperatura ambiente ou refrigerada. Ao final do armazenamento, os frutos revestidos com QUI-OEOV apresentaram maiores quantidades de catequina, miricetina, ácido cafeico e ácido siringico em comparação aos frutos não revestidos. Nos testes sensoriais, os frutos revestidos com QUI-OVEO receberam maiores escores para os atributos aparência, sabor e cor quando comparados aos frutos sem revestimento. Estes resultados indicam que o revestimento comestível de QUI-OEOV é um tratamento viável para manter a qualidade de tomates cereja durante o armazenamento.

The Neon-S method has been used for the detection of Sclerotinia sclerotiorum in soybean and common beans since the agricultural year 2010. However, this method yields false positive readings due to other fungi that change medium pH. Thus, this study evaluated the contribution of increasing incubation period on the optimization of Neon-S reliability in different cultivars of soybeans and common beans. Nine treatments were evaluated in randomized blocks design, as a 3x3 factorial, with three replications. The factors were three detection methods (paper roll, Neon- S, and Neon S2) and three cultivars: naturally infected Pérola beans; naturally infected soybean cultivar BRS Valiosa RR, and artificially inoculated soybean cultivar Nidera 7255 RR). Inoculation of soybean Nidera 7255 RR was done by incubating the seeds for 72 h on PDA where the fungus was previously grown for seven days at 25 ºC. The three methods were compared, evaluating 400 seeds per replication, after incubation for seven days in Neon-S, for 15 days in Neon-S2, and for 30 days in paper roll, determining the presence of the fungus, and that of sclerotia adhered to the seeds. Twenty seeds were used per plate for media Neon-S and Neon-S2 (20 plates per replication), and 50 seeds per roll for the paper roll. Seeds were incubated at 20 ºC in BDO chamber in darkness. The data were submitted to the analysis of variance and the averages compared by the Tukey test at 5% probability. The interaction between detection method and cultivar was significant at 1% probability, indicating that the best method depends on the cultivar under study. Among the cultivars evaluated, artificially infected soybean presented the greatest indices of pathogen infection. A comparison of seed lots analyzed at the Plant Disease Clinic LAMIP proved greater sensibility of Neon-S in a total of 637 lots evaluated from 2008 to 2012. In that period, the paper roll test resulted in 21.88% positive samples, while in Neon-S 31.25% of them were positive. Another distinguishing factor among the lots analyzed was the percentage of infected and, or, contaminated seeds, which varied from one (0.25%) to five (1.25%). Therefore, detection of S. sclerotiorum by the Neon-S2 method can be optimized by incubation for 15 days, considering that, in this case, the formation of sclerotia near the infected seeds confirm the presence of the pathogen, avoiding false positive readings. Neon-S2 method increased detection sensibility of S. sclerotiorum in seed lots analyzed in comparison with the paper roll method; however, in comparison with Neon S method, despite its greater average, no significant differences were observed. / O método de Neon-S tem sido utilizado para a detecção de Sclerotinia sclerotiorum em sementes de soja e feijão a partir da safra de 2010. Porém, esse método possibilita a leitura de falsos positivos devido ao aparecimento de fungos que também alteram o pH do meio. O objetivo deste trabalho foi verificar se o aumento do período de incubação pode contribuir para otimizar a confiabilidade do teste Neon-S em diferentes cultivares de soja e feijão. Foram avaliados nove tratamentos em delineamento de blocos casualizados no esquema fatorial 3x3, com três repetições, sendo três métodos de detecção: rolo de papel, Neon-S e Neon S2 e três cultivares: Feijão Pérola infectados naturalmente; soja cultivar BRS Valiosa RR infectadas naturalmente e soja cultivar Nidera 7255 RR inoculada artificialmente. Para a inoculação da soja Nidera 7255 RR, as sementes foram incubadas em meio de cultivo BDA por 72 h, após o cultivo do fungo por sete dias na temperatura de 25 ºC. Os três métodos foram comparados, avaliando 400 sementes por repetição, meio Neon-S com incubação de sete dias, Neon-S2 com incubação de quinze dias e o rolo de papel por trinta dias, anotando-se a presença do fungo e a presença de escleródios aderidos às sementes. No meio Neon-S e Neon-S2 foram utilizadas 20 sementes por placa (20 placas por repetição). No rolo de papel foram usadas 50 sementes por rolo. As sementes foram incubadas 20 ºC em BOD, no escuro. Realizou-se a análise de variância dos dados e teste de comparação de médias (Tukey 5%). A interação entre o método de detecção e a cultivar utilizada foi significativo a 1% de probabilidade, indicando que o melhor método depende da cultivar avaliada. Dentro das cultivares avaliadas, a soja infectada artificialmente foi a que apresentou os maiores índices de infecção pelo patógeno. Usando os resultados de lotes de sementes, comprovou-se a maior sensibilidade do Neon-S num montante de 637 lotes testados no período de 2008 a 2012. Durante esse período, o teste de rolo apresentou 21,88% de amostras positivas, enquanto que o Neon-S foi de 31,25%. Outro fator diferenciador em relação aos lotes analisados foi a porcentagem de sementes contaminadas e ou infectadas, que variou de uma (0,25%) a cinco (1,25%). Assim a detecção de S. sclerotiorum pelo método Neon-S2 pode ser otimizada com a incubação por 15 dias, considerando que, neste caso, a formação de escleródios próximos às sementes infectadas confirma a presença do patógeno e evita a leitura de falsos positivos. O método Neon-S2 aumentou a sensibilidade de detecção de S. sclerotiorum em lotes de sementes analisadas quando comparado ao método de rolo, porém, quando comparado com o método Neon S, sua média foi maior, mas a diferença não foi significativa. / Mestre em Agronomia

O Brasil é considerado o maior produtor de citros e o maior exportador de suco de laranja. Doenças de pós-colheita representam uma grande perda na citricultura, sendo que para muitos frutos a serem exportados, existe uma exigência para que os mesmos estejam isentos de resíduos químicos. Em relação a alguns patógenos de importância em pós-colheita podemos destacar, Guignardia citricarpa (Mancha-pretados- citros), Penicillium digitatum (Bolor-verde) e Colletotrichum gloeosporioides (Antracnose). Dada a importância econômica que representa esse complexo de doenças dos frutos cítricos, tanto em termos de comprometimento da qualidade dos frutos, limitações às exportações e dificuldade de controle, a busca de alternativas adicionais que possam viabilizar a capacidade produtiva dos produtores e garantir a obtenção de frutos com excelentes padrões de qualidade torna-se imprescindível. Nesse contexto, pode-se inserir o emprego de medidas de controle alternativas que não englobam o controle químico clássico. Sob esse ponto de vista inclui-se o controle através do uso de agentes bióticos e abióticos e a indução de resistência em plantas. Portanto neste trabalho, foi estudada a viabilidade do controle de doenças pós-colheita em citros, envolvendo a ação direta sobre os patógenos através do uso dos extratos etanólicos de albedo (mesocarpo) de laranja doce (Citrus sinensis var. Valência) e flavedo (exocarpo ou epicarpo) de limão-Tahiti (Citrus aurantifolia Swing var. Tahiti). O extrato do albedo apresentou efeito antifúngico sobre G. citricarpa e o flavedo do limão “Tahiti” sobre C. gloeosporioides, além de se demonstrar a existência de compostos voláteis com efeito tóxico. A segunda parte envolveu o controle e a indução de resistência em frutos, através do uso dos agentes bióticos Lentinula edodes e Agaricus blazei e do agente abiótico ácido jasmônico. Foi possível observar que o extrato aquoso do albedo (C. sinensis), flavedo (C. aurantifolia), L. edodes e A. blazei diminuíram o aparecimento de novas lesões causadas por G. citricarpa, porém não apresentaram efeitos sobre P. digitatum e C. gloeosporioides em frutos de C. sinensis var. Valência quando tratados em pós-colheita. Dessa maneira, no presente trabalho demonstrou-se a viabilidade de um possível controle alternativo de doenças pós-colheita em citros, buscando-se novos agentes que atuem como indutores de resistência ou de controle direto sobre os fitopatógenos. / Brazil is considered the biggest citrus producer and the biggest orange juice exporter. Post-harvest diseases represent a great loss in the citriculture, and for many fruits to be exported they should be free of chemical residues. In relation to some pathogens of importance in post-harvest it can be mentioned Guignardia citricarpa (black-spot-ofcitrus), Penicillium digitatum (green-mold) and Colletotrichum gloeosporioides (anthracnose). Because of the economical importance that represents this disease complex in citric fruits, in terms of compromising fruit quality, limitations to the exports and control difficulties, the search for alternative control measures that can make possible improve the producing capacity of the producers and the obtaining of fruits with excellent quality are indispensable. Thus, in this context it can be included measures of alternative control that do not include the chemical control. Under this point of view, control include the use of biotic and abiotic agents and the resistance induction in plants. Therefore, it was studied the viability of the control of post-harvest diseases in citrus, involving the direct action on the patogens by using ethanolic extracts of albedo (mesocarp) of sweet orange (Citrus sinensis var. Valência) and flavedo (exocarp or epicarp) of lemon-Tahiti (Citrus aurantifolia Swing var. Tahiti). The results showed that the extract of the albedo exhibited antifungal activity on G. citricarpa and the flavedo of the "Tahiti" lemon on C. gloeosporioides, and it was also demonstrated the existence of volatile compounds toxic to the fungus. The second part involved the control and resistance induction in the fruits, by using the biotic agents Lentinula edodes and Agaricus blazei and the abiotic agent jasmonic acid. It was possible to observe that the aqueous extracts from the albedo (C. sinensis), flavedo (C. aurantifolia), L. edodes and A. blazei reduced the formation of new lesions caused by G. citricarpa, however they did not exhibit effects on P. digitatum and C. gloeosporioides in fruits of C. sinensis var. Valência when treated in post-harvest. Thus, in the present work it was demonstrated the viability of possible alternative control measures of diseases in post-harvest of citrus, indicating the need of looking for new agents to act as resistance inducers or agents to directly control on the phytopathogens.

Thermisch und mechanisch hoch beanspruchte Bauteile im Automobil erfordern den Einsatz hochbeständiger Werkstoffe, bei gleichzeitig niedrigen Materialkosten und effizienter Verarbeitung. Rieselfähige Phenolharzformmassen zeichnen dabei eine Werkstoffklasse aus, die aufgrund ihres Eigenschaftsprofils neue Anwendungsbereiche für einen polymeren Werkstoffeinsatz ermöglichen können. Im Rahmen der vorliegenden Arbeit werden im Hinblick auf eine Bauteilentwicklung mithilfe der integrativen Simulation die Grundlagen einer ganzheitlichen Simulationskette der Prozess- und Struktursimulation von rieselfähigen Phenolharzen mit Kurz- und Langglasfaserverstärkung erarbeitet. Das auf Basis umfangreicher Prozessuntersuchungen abgeleitete Strömungsverhalten kann mithilfe des Block-/Scherströmungsmodells beschrieben werden. Die Ergebnisse der Mikrostrukturanalyse zeigen jedoch eine Orientierungsdynamik der Fasern, welche zum gegenwärtigen Zeitpunkt mithilfe der empirischen Modelle der klassischen Spritzgießsolver nicht abgebildet werden kann. Die mikromechanische Materialmodellierung erfolgt entsprechend an der experimentell ermittelten Mikrostruktur, welche die Berücksichtigung von Faserbündelungen und -krümmungen in der mechanischen Strukturanalyse erlaubt. Das abgeleitete elastoplastische Materialmodell wird zur Vorhersage des Ermüdungsverhaltens unter harmonischer und nichtharmonischer Schwingbeanspruchung um ein zyklisches Versagensmodell erweitert, welches eine mittellast- und temperaturunabhängige Berechnung unter Berücksichtigung der Anisotropie ermöglicht. Die Validierung der statischen und schwingenden Beanspruchung erfolgt an einer einfachen Probestabgeometrie sowie einem Strukturbauteil, einem PKW-Motorträger. / Thermally and mechanically highly stressed automotive components require the use of highly resistant materials, with low material costs and efficient processing. Phenolic resin molding compounds represent a class of materials, which can open up new applications for a polymeric material use due to their property profile. In the present work, the fundamentals of a simulation chain of fluid mechanical and structural simulation of phenolic resins with short and long glass fiber reinforcement are developed, with a view to component development using integrative simulation. Based on extensive process investigations the derived flow behavior can be described using the block/ shear flow model. However, the results of microstructure analysis show a dynamic of fiber orientation, which can not be predicted at the present time using the empirical models of classical injection molding simulation. Accordingly, the micromechanical modeling is carried out at the experimentally determined microstructure. That allows the inclusion of fiber bundling and bending in the mechanical structure analysis. The derived elastoplastic material model is extended by a fatigue failure model to predict the fatigue behavior under harmonic and non-harmonic cyclic stress which allows a calculation taking into account the anisotropy, the stress ratio and the temperature. The validation of the static stress and fatigue is performed both on a simple test bar geometry and a structural component, an automotive engine bracket.

Notre volonté d'économiser l'énergie nous pousse à vivre dans un environnement confiné favorisant les acariens et les micro-organismes. L'objectif de la thèse est de caractériser la contamination en acariens et en micro-organismes des logements de patients présentant des pathologies respiratoires, d'évaluer l'influence des interactions acariens/moisissures sur l'exposition aux allergènes et de comprendre les facteurs favorisant la pollution biologique de l'air intérieur. Afin de disposer d'un outil commun aux acariens et aux micro-organismes, un modèle innovant de quantification des acariens pas qPCR a été mis au point. Les acariens de stockage sont sous-estimés et les mesures d'éviction doivent être appliquées à l'ensemble de l'habitat. L'observation des interactions acariens/moisissures a montré une vraie relation symbiotique: dispersion des moisissures et apports des nutriments essentiels aux acariens. La contamination des logements de producteurs laitiers atteint de BPCO a été comparée à celle de producteurs laitiers sains, de patients BPCO non­-agriculteurs et de sujets sains non-agriculteurs. L'exposition agricole est abondante et spécifique à certains micro­organismes caractéristiques de la ferme et la sensibilité IgG à Wallemia sebi est spécifique des producteurs laitiers BPCO Le suivi de l'impact du compostage sur la qualité biologique de l'air intérieur a démontré une augmentation des concentrations en acariens de stockage et certaines moisissures circonscrite au bio-seau. De nouveaux indicateurs communs aux acariens, aux moisissures et aux bactéries devraient nous permettre de progresser dans la détermination de la relation dose/effet. / Our will to save energy leads us to live in a confined environment providing the ideal conditions to mites and microorganisms development. The aim of the thesis is to characterize mites and microorganisms contamination of dwellings from patients suffering respiratory diseases, to estimate the influence of the interactions between various organic communities on the allergens exposure and to understand the factors increasing the biological pollution ofindoor air. To evaluate our exposition, we needed to quantify mites and microorganisms with a common tool and an innovative quantification mode! of domestic mites by qPCR was developed. The presence of storage mites is overemphasized in dwellings of allergie patients and the eviction measures of mites should be applied into any rooms of dwellings. The contamination of dairy fanners' dwellings suffering from COPD was compared with that ofhealthy dairy fanners, COPC patients non-farmers and healthy non-fanners. In dwellings, the dairy fanners' exposure was important and specific ofth1 fanning environment. The lgG sensitivity to Wallemia sebi was significantly specific of dairy fanners suffering from COPD. The impact of the composting on the biological air quality was evaluated and the concentrations in storage mites and some molds increased significantly only in a confined area around the waste bin. New common indicators of domestic mites, molds and bacteria should allow us to progress in the determination of the dose-response relationship for the different allergens and their possible synergie effects.

By combining laboratory experiments with field work, I have looked at the following aspects of cellular slime mould (CSM) biology: (a) the genetic structure of social groups (fruiting bodies) in the wild and its relation to the role of large mammals as dispersal agents; (b) social behaviour in clonal, intra-species polyclonal and interspecies social groups and (c) fitness-related trade-offs with respect to life history traits as a possible mechanism for coexistence and cooperative behaviour in CSMs. The major findings of this study are as follows: (a) individuals belonging to different strains of a species, different species and genera occur in close proximity, even on a speck of soil (250µm–1mm) or the same dung pat; (b) social groups formed in the wild by Dictyostelium giganteum and D. purpureum are generally multiclonal; (c) genetically diverse strains can co-aggregate and form chimaeric social groups; (d) in chimaeric social groups, strains differ in their relative sporulation efficiencies; (e) the fact that strains co-exist in spite of this may be attributable in part to trade-offs between various fitness-related traits as can be demonstrated in the case of wild isolates of D. giganteum in pair wise mixes. The Dictyostelids or CSMs are haploid, eukaryotic, soil dwelling social amoebae with an unusual life cycle (Bonner, 1967; Raper, 1984). They exist as single cells in the presence of food (bacteria, yeast, fungal spores). Once the food is exhausted, they enter the social phase of their life cycle. Approximately 102 to 106 amoebae aggregate at a common collection point and form a starvation resistant structure called the fruiting body. In many species a fruiting body is made up of an aerial stalk of dead cells and a ball of viable spores on top. In other CSM species (not part of this study), all amoebae in a fruiting body differentiate into spores and the stalk is an extracellular secretion. The CSM life cycle raises fundamental questions related to the evolution of an extreme form of ‘altruism’ in the form of reproductive division of labour in social groups. The spore–stalk distinction in the CSMs is analogous to the germ–soma distinction in metazoans, although, the CSMs achieve multicellularity not by repeated divisions of a zygote but via the aggregation of many cells which may or may not be clonally related (Bonner, 1982; Kaushik and Nanjundiah, 2003). Social behaviour in the CSMs offers interesting parallels to what is seen in the social insects (Gadagkar and Bonner, 1994). The origin and maintenance of ‘altruism’ has been a long-standing issue in sociobiology. Because of their simple life cycle and experimental tractability, the CSMs are ideal for studying the evolutionary origin and maintenance of social behaviour, in particular of ‘altruistic’ behaviour. By elevating spores above soil level, stalk cells, protect them from noxious compounds and predators present in soil and also facilitate their passive dispersal. In the course of doing so they die. The death of stalk cells appears to be an extreme form of altruism. Knowledge of the genetic structure of social groups and populations including patterns of kinship is essential for modelling the evolution of ‘altruism’. Thus, it is important to understand the genetic structure of CSM social groups in the wild. For this, social groups (fruiting bodies) of CSMs were isolated from undisturbed forest soil of the Mudumalai forest reserve in South India. Soil and animal dung samples were brought to the laboratory and quasi-natural social groups were generated by inoculating the samples on non-nutrient agar. The fruiting bodies from various CSM species were formed by these isolates. Since soil and dung samples were not perturbed in any way, the fruiting bodies were formed as they would have in nature. When compared to soil, dung samples contained a higher CSM diversity and more CSM propagules. The presence of CSMs in fresh animal dung makes it likely that they were transported and dispersed over long distances through the gut of these animals. Such dispersal is likely to be preceded by a thorough mixing of spores in the gut. That increases the probability of co-occurrence of different genotypes in a social group. This possibility was confirmed by genetically characterizing spores in social groups of Dictyostelium giganteum and D. purpureum collected from the wild. Random amplification of polymorphic DNA (RAPD), a simple and reliable molecular technique, was used for genotyping spores within a fruiting body. 17 fruiting bodies (8 from animal dung and 9 from soil) were studied. 15 out of 17 (9 out of 11 of D. giganteum and 6 out of 6 D. purpureum) were polyclonal; the minimum number of distinct clones in a single fruiting body was 3 to 7 (animal dung) and 1 to 9 (soil). Therefore in D.giganteum and D. purpureum, chimaeric social groups seem to be the norm. This suggests that other species of CSMs form intra-species chimaeric social groups in wild, though clonal fruiting bodies occur too. The next objective of this thesis was to test whether genetic heterogeneity had functional consequences. That is, when different strains come together in an aggregate, do they contribute equally to the reproductive (spore) and non-reproductive (stalk) pathways? Amoebae of different clones (strains) of D. giganteum or D. purpureum were mixed and developed together and the number of spores formed by each strain was counted. These experiments confirmed that strains of D. giganteum or D. purpureum can aggregate together and form chimaeric fruiting bodies. The ability to mix (measured as the frequency of chimaerism) depended on the strains used and varied from one mix to another. One strain was often found to ‘exploit’ the other during sporulation, that is, it formed more spores than its expected share. Despite this, strains are found in very close proximity in the soil, which raises an important question: when one strain is more efficient at sporulating than other, how can the two co-exist stably? To investigate what might lie behind the stable co-existence of strains, I studied various fitness-related traits in the life cycle of D. giganteum. They included the rate of cell division, the time taken to go through multicellular development, the efficiency of slug migration through various depths of soil and the probability of differentiation into a spore. Measurements were carried out on strains taken separately and on their pair wise mixes. Five different D. giganteum wild strains (46a3, 46d2, 48.1a1, F5 and F16) were used. All were isolated from the Mudumalai forest (India). 46a3 and 46d2 came from soil within 10 cm of each other, 48.1a1 from soil about 200m away from 46a3; and F5 and F16 from the same fruiting body (Kaushik et al., 2006; Sathe et al., 2010). Members of a pair differed significantly in the measured fitness-related traits. For example, in the case of 48.1a1 and 46d2, 48.a1 grew faster than 46d2 both individually and in a mix. After starvation, 48.1a1 formed fruiting bodies faster than 46d2; a mix of the two developed at the rate of the faster member, implying that the slower one (46d2) gained from the association with 48.1a1. During slug migration, slugs formed by 48.1a1 came up through a higher depth of soil than 46d2 slugs and did so earlier. Chimaeric slugs were like the more efficient member, 48.1a1, in terms of the maximum depth of soil that was covered, but like the less efficient member, 46d2, in terms of the time taken for slugs to be seen on the soil surface. 48.1a1 seems to have an advantage over 46d2 in all these respects. However, during sporulation in chimaeras, 48.1a1 formed relatively fewer spores than 46d2. Similar trade-offs were seen in all mixes. F5 and F16 displayed an unexpected feature during sporulation; the spore-forming efficiency of either strain depended on its proportion in the initial mix in a frequency-dependent manner that was consistent with a stable equilibrium. Thus, trade-offs between different fitness-related traits contribute to the co-existence of strains. Next, I studied interactions between members of different CSM species. Several species of CSMs were isolated from the same environment (Sathe et al., 2010); a question of interest was to see if amoebae of different species came together to form a chimaeric multicellular body. Five strains (two D. purpureum and three D. giganteum) were used in this study. Amoebae of D. giganteum and D. purpureum co-aggregated. However, there were factors that caused amoebae of the two species to sort out thereafter. The extent of segregation differed between strains, a characteristic that inter-species mixes share with intra-species mixes. In conclusion, the ability of cellular slime moulds to form multiclonal social groups in the wild suggests that one should look to factors in addition to close relatedness to understand the evolution of CSM social behaviour. The existence of fitness-related trade-offs between different traits indicates that individual-level selection can also contribute to the maintenance of chimaeric social groups.

The study of landscape structure and configuration is firmly established as integral to the continued advancement of ecology. The configuration of resource patches can have far-reaching implications for biodiversity, metapopulation dynamics, community structure, and habitat quality. Human activities, such as forestry, agriculture, and residential construction alter patch configuration by breaking larger patches into smaller fragments. This frequently results in pronounced, unforeseen consequences for species. The fragmentation and shrinking of habitat patches can lead to changes in the environmental conditions within the remaining patches (e.g., degradation), prompting responses from local populations. These responses can, in turn, cause changes to the metapopulation structure on large spatial scale.<br>I examined the relationship between the degree of habitat fragmentation (edge density), and forewing lengths of the ebony jewelwing damselfly (Calopteryx maculata Beauvois, Odonata: Calopterygidae). I used correlated random walks to determine the biologically relevant landscape area over which forest fragmentation was calculated. Then, I used Moran’s I to determine the spatial scale of wing length response to fragmentation. I found that wing lengths increased with edge density. I also found that wing lengths were spatially autocorrelated at distances below 5 Km. These findings suggest that damselflies adapt to changes in forest fragmentation at a relatively small spatial scale.<br>Next, I assessed the slime mold Physarum polycephalum’s usefulness as a microcosm of dispersal in fragmented landscapes. Slime mold plasmodia were placed in dishes with oat patches of varying sizes and distances. The probability of each patch type being colonized first was compared to predictions of patch occupancy based on C. maculata. Patches that were nearer or larger were likely to be colonized before patches that were more distant, or smaller. Observed patch occupancy matched model predictions when only patch distance was varied, but not when patch size was varied. These results suggest that P. polycephalum has the potential to serve as a useful microcosm of dispersal in patchy landscapes. However, more testing is needed to develop the microcosm system. <br>Finally, a lesson plan was developed to teach high school students about the concepts of landscape ecology and connectivity. An emphasis was placed on using active learning techniques, which have been demonstrated to result in greater understanding than traditional lecture formats. The lesson plan incorporates an education boardgame, Humans & Habitats, that I developed to illustrate how the conflicting goals of resource managers impact habitat connectivity. It also incorporates a scientific inquiry activity that uses P. polycephalum to test predictions about the effect of altered connectivity. The lesson plan and materials will be available to members of the public, free of charge.<br><br>

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