Global ETD Search

1	The transaldolase family : structure, function and evolution / Thorell, Stina, January 2001 (has links) Diss. (sammanfattning) Stockholm : Karolinska institutet, 2001. / Härtill 3 uppsatser. Molecular sequence data. Enzymer.
2	Pandemic Vibrio parahaemolyticus : defining strains using molecular typing and a growth advantage at lower temperatures / Davis, Carisa Renee. January 2008 (has links) Dissertation (Ph.D.)--University of South Florida, 2008. / Includes vita. Includes bibliographical references. Also available online.
3	Biomolecular characterization of mumps virus genotypes with varying neurovirulence / Tecle, Tesfaldet, January 2002 (has links) Diss. (sammanfattning) Stockholm : Karolinska institutet, 2002. / Härtill 6 uppsatser.
4	Characterization of the in vivo functions of Y-Family DNA polymerases kappa and Rev1 Kosarek, Jayme Nicole January 2008 (has links) Dissertation (Ph.D.) -- University of Texas Southwestern Medical Center at Dallas, 2008. / Vita. Bibliography: p. 117-123.
5	STORI: selectable taxon ortholog retrieval iteratively Stern, Joshua Gallant 08 June 2015 (has links) Speciation and gene duplication are fundamental evolutionary processes that enable biological innovation. For over a decade, biologists have endeavored to distinguish orthology (homology caused by speciation) from paralogy (homology caused by duplication). Disentangling orthology and paralogy is useful to diverse fields such as phylogenetics, protein engineering, and genome content comparison. A common step in ortholog detection is the computation of Bidirectional Best Hits (BBH). However, we found this computation impractical for more than 24 Eukaryotic proteomes. Attempting to retrieve orthologs in less time than previous methods require, we developed a novel algorithm and implemented it as a suite of Perl scripts. This software, Selectable Taxon Ortholog Retrieval Iteratively (STORI), retrieves orthologous protein sequences for a set of user-defined proteomes and query sequences. While the time complexity of the BBH method is O(#taxa^2), we found that the average CPU time used by STORI may increase linearly with the number of taxa. To demonstrate one aspect of STORI’s usefulness, we used this software to infer the orthologous sequences of 26 ribosomal proteins (rProteins) from the large ribosomal subunit (LSU), for a set of 115 Bacterial and 94 Archaeal proteomes. Next, we used established tree-search methods to seek the most probable evolutionary explanation of these data. The current implementation of STORI runs on Red Hat Enterprise Linux 6.0 with installations of Moab 5.3.7, Perl 5 and several Perl modules. STORI is available at: <http://github.com/jgstern/STORI>. Ortholog prediction Protein sequence retrieval Modeling bacterial evolution Fusobacteria Molecular sequence data management Bayesian inference phylogenomics
6	Medium chain dehydrogenases/reductases : alcohol dehydrogenases of novel types / Norin, Annika, January 1900 (has links) Diss. (sammanfattning) Stockholm : Karol. inst., 2003. / Härtill 7 uppsatser.
7	Nuclear receptors studied by molecular dynamics computer simulations / Carlsson, Peter, January 2004 (has links) Diss. (sammanfattning) Stockholm : Karol. inst., 2004. / Härtill 4 uppsatser.
8	Molecular mechanisms of local anaesthetic action on voltage-gated ion channels / Nilsson, Johanna, January 2004 (has links) Diss. (sammanfattning) Stockholm : Karol inst., 2004. / Härtill 4 uppsatser.
9	Biological activities of novel platelet-derived growth factors, PDGF-C and PDGF-D / Pontén, Annica, January 2004 (has links) Diss. (sammanfattning) Stockholm : Karol. inst., 2004. / Härtill 4 uppsatser.
10	Characterization of a putative tumor suppressor region identified by the elimination test on human 3p21.3 / Kiss, Hajnalka, January 2003 (has links) Diss. (sammanfattning) Stockholm : Karol. inst., 2003. / Härtill 6 uppsatser.

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