Coordenação de Aperfeiçoamento de Pessoal de Nível Superior / The lack of long-term data on communities of mollusks which today occupy impacted rivers and streams may hinder the determination of the degree to that the same are altered. In this sense, quantitative studies on the paleodiversity and spatial distribution of their communities are an important contribution to the knowledge of the biodiversity of freshwater mollusks and preserving the integrity of rivers in southern Brazil. The additive partitioning of species diversity is an efficient method to analyze the species diversity at several spatial scales and identify the most important source and target of efforts to conservation diversity. Another type of study is the quantitative fidelity. This type of analysis aims to assess the degree to which dead assemblages reflect the communities living, and enables answering questions about productivity, biomass and community structure of ancient as well as anthropogenic changes. This study aimed to identify and understand the spatial distribution of communities living mollusks and quantitative fidelity of live and dead assemblages in the Ibicuí River basin, Rio Grande do Sul, Brazil. In chapter one, aimed to assess the distribution of mollusks communities in the Toropi River and partition of community diversity at different spatial scales. The results showed that all species mollusks found, as well as the community overall, exhibited clumped distribution, influencing the partition of beta diversity of communities of freshwater mollusks studied. Chapter two aimed to evaluate the degree of quantitative fidelity of dead and live assemblages mollusks of the Ibicuí River basin, southern Brazil, under the influence of three environmental factors at large and local spatial scale: relief (plain x slope), order of the rivers (small x medium-large) and grain size (gravelly x sandy). The results showed a difference in fidelity between the live and assemblages in the Ibicuí River basin in relation to species composition, dominance and richness. The live assemblages were related to these factors. The species composition of dead assemblages can be used to infer the order of rivers, can be used to reconstruct the order of hydrological environments where they are accumulated. However, the dead assemblies can not be used to provide information about relief because the accumulation of shells are not influenced by such environmental variable. / A inexistência de dados de longo prazo sobre as comunidades de moluscos que hoje ocupam rios e riachos, atualmente, pode dificultar a determinação do grau em que as mesmas encontram-se alteradas. Nesse sentido, estudos quantitativos sobre a paleodiversidade e a distribuição espacial de suas comunidades representam importante contribuição ao conhecimento da biodiversidade dos moluscos límnicos e preservação da integridade dos rios do sul do Brasil. A partição aditiva da diversidade de espécies é uma forma eficiente para analisar a diversidade de espécies em várias escalas espaciais e identificar a fonte mais importante e o destino dos esforços para a conservação da diversidade. Outro método, a fidelidade quantitativa, permite responder questões sobre produtividade, biomassa e estrutura de comunidades, assim como alterações antropogênicas, analisando o grau com que associações mortas refletem as comunidades vivas, O presente estudo teve como objetivos conhecer e compreender a distribuição espacial das comunidades vivas de moluscos e a fidelidade quantitativa das assembléias vivas e mortas na bacia do rio Ibicuí, extremo sul do Brasil. No capítulo um, objetivou-se avaliar a distribuição das comunidades de moluscos no rio Toropi e a partição da diversidade da comunidade em diferentes escalas espaciais. Os resultados mostraram que todas as espécies de moluscos encontrados, bem como, a comunidade no total, exibiram distribuição agregada, influenciando a partição da diversidade beta das comunidades de moluscos límnicos estudadas. O capítulo dois teve como objetivo avaliar o grau da fidelidade quantitativa das associações vivas e mortas de moluscos da bacia do Rio Ibicuí, sul do Brasil, sob a influência de três fatores ambientais, em escala espacial ampla e local: relevo (planície x encosta), ordem dos rios (pequena x média-grande) e granulometria (substrato arenoso x cascalhoso). Os resultados demonstraram uma diferença na fidelidade entre as assembleias vivas e mortas na bacia do Rio Ibicuí, em relação a composição de espécies, dominância e riqueza. As assembleias vivas estiveram relacionadas a estes fatores. A composição de espécies das assembleias mortas pode ser usada para inferir a ordem dos rios, podendo ser utilizadas para reconstituir a ordem hidrológica dos ambientes onde estão acumuladas. No entanto, as assembleias mortas não podem ser utilizadas para fornecer informações sobre relevo, pois as acumulações de conchas não foram influenciadas por essa variável ambiental.

No description available.

No description available.

The Jupiter Inlet I site is situated between the Atlantic coast and the Loxahatchee River in southeast Florida. Although excavations were previously conducted, faunal remains were not systematically collected until recently. Molluscan remains recovered in 2010 are examined to reconstruct past ecological habitats, identify which water bodies were used for extracting resources, and document changes in molluscan species over time. Based upon identifications, only brackish and marine species are represented, indicating that the Loxahatchee River was brackish rather than freshwater during the time of occupation and that the site inhabitants were collecting mollusks from both the lagoon and coastal waters. / Includes bibliography. / Thesis (M.A.)--Florida Atlantic University, 2016. / FAU Electronic Theses and Dissertations Collection

Le littoral est l’objet d’une contamination chimique chronique par de nombreux polluants (résidus de pesticides, résidus médicamenteux, métaux lourds…), qui sont toxiques et qui sont impliqués dans des problématiques de santé publique et de dégradations environnementales. Certains contaminants agissent à faibles doses, tandis que d’autres induisent des effets cocktails redoutables sur les organismes. Les principaux contaminants sont régulièrement dosés dans différents points stratégiques liés à la ressource en eau, surtout celle de distribution et dans certains aliments. Mais face au foisonnement des contaminants qui sont déversés dans l’environnement, il n’existe aucun système de veille efficace qui tienne compte de l’étendue réelle du problème. Par ailleurs, contrairement à ce qui existe pour l’homme, il n’y a pas de démarches finalisées et normalisables pour évaluer l’état de santé des invertébrés aquatiques, alors qu’ils représentent plus de 95% de la biodiversité. L’objectif de ce travail de thèse interdisciplinaire a consisté à évaluer l’impact des polluants chimiques sur des espèces littorales (frange littorale et zones portuaires). Un premier champ d’études a visé à mettre au point des méthodes efficaces pour évaluer la contamination des bivalves par des polluants organiques et inorganiques (volet écotoxicologie) ; un second volet a eu pour but d’analyser les effets biologiques des polluants en développant une utilisation conjointe de plusieurs biomarqueurs (volet écophysiologie). Ainsi, à l’image de ce qui est fait en santé publique, ce projet de thèse a défini pour la première fois plusieurs démarches analytiques et statistiques pour le suivi de la qualité de l’eau en milieu littoral. / The coastline faces chronic chemical contamination due to numerous toxic pollutants (residues of pesticides and medicines, heavy metals, etc.) causing public health issues and environmental degradation. Whereas some contaminants are efficacious at low doses, others lead to dangerous cocktail effects on organisms. The main contaminants are assayed regularly among strategic stages linked to water resource. There is a particular focus on supply and food. Nonetheless, due to the proliferation of contaminants released in the environment, there is no effective monitoring system taking the real extent of the problem into consideration. Moreover, unlike existing methods for humans, there is no finalised or standardised approach to assessing the health of state of aquatic invertebrates, while they represent more than 95% of the biodiversity. The purpose of this thesis work involving interdisciplinary research was to evaluate the pollution impacts on the coastline species (coastal fringe and port areas). A first part of the study aimed at designing effective methods of contamination assessment on bivalves by organic and inorganic pollutants (ecotoxicology). Another part focused on analysing biological effects of pollutants by developing a joint use of several biomarkers (ecophysiology). Thus, like work carried out by public health, this thesis project defined for the first time several analytical and statistical steps on monitoring the state of health of marine organisms and the water quality in coastal areas.

Objectifs généraux: les systèmes fluviaux tropicaux et tempérés d'eau douce sont connus pour soutenir différentes communautés biotiques. Dans cette étude, menée dans une région d'Asie tropicale et dans une région d'Europe tempérée, j'ai étudié la composition et la diversité de la communauté des macro-invertébrés benthiques ainsi que leurs variations spatiales et temporelles. J'ai également examiné les influences des variables physico-chimiques de la qualité de l'eau sur les variations et la diversité de la composition de la communauté et j'ai modélisé l'occurrence d'espèces sélectionnées. Localisation géographique: Asie tropicale: le bassin aval du Mékong (LMB), couvrant une superficie de 609 000 km2; Europe tempérée: Europe occidentale, fleuves flamands (Belgique), couvrant une superficie de 13 787 km2. Matériel et méthodes: Pour le LMB, les données recueillies de 2004 à 2008 ont été utilisées et les valeurs médianes de cette période ont été analysées. Pour les rivières flamandes, les données collectées de 1991 à 2010 ont été utilisées. Les données ont été divisées en 4 périodes: D1: 1991-1995, D2: 1996-2000, D3: 2001-2005 et D4: 2006-2010. Les médianes de chaque période ont été utilisées pour des analyses spatiales détaillées. Des analyses multivariées ont été appliquées pour relier la composition et la diversité de la communauté aux variables physico-chimiques. Cinq techniques de modélisation, à savoir la régression logistique (LR), les Random Forest (RF), le Support Vector Machine (SVM), les réseaux de neurones artificiels (ANN) et les arbres de classification (CT) ont été utilisées pour modéliser l'occurrence desespèces sélectionnées. Principaux résultats: Variations de la composition des communautés, diversité et relation avec les variables environnementales Dans le cours aval du Mékong LMB, 299 taxons de macro-invertébrés distribués dans 196 genres et 90 familles ont été identifiées; dont 131 insectes, 98 mollusques, 38 crustacés et 32 annélides. / Overall aims: Freshwater tropical and temperate river systems are known to support different biotic communities. In this study, I investigated benthic macroinvertebrate community composition and diversity and its spatial and temporal variation both in tropical Asian and temperate European regions. I also examined the influences of physical-chemical water quality variables on community composition, variations and diversity, and modelled the occurrence of selected species. Locations: Tropical Asia: the Lower Mekong Basin (LMB), covering an area of 609,000 km2; Temperate Europe: Western Europe, Flemish rivers (Belgium), covering an area of 13,787 km2. Materials and Methods: For the LMB, data collected from 2004 to 2008 were used, and median values of this period were analysed. For Flemish rivers, data collected from 1991 to 2010 were used. The data were divided into 4 periods: D1: 1991-1995, D2: 1996-2000, D3: 2001-2005 and D4: 2006-2010. The medians of each period were used for detailed spatial analyses. Multivariate analyses were applied to relate community composition and diversity to physical-chemical variables. Five modelling techniques namely Logistic Regression (LR), Random Forest (RF), Support Vector Machine (SVM), Artificial Neural Network (ANN) and Classification Tree (CT) were used to model the occurrence of selected species. Main results: Community composition variations, diversity and relationship with environmental variables From the LMB, 299 macroinvertebrate taxa belonging to 196 genera and 90 families were identified: 131 insects, 98 molluscs, 38 crustaceans, and 32 annelids.

Hemocyanins (Hcs) and phenoloxidases (POs) are both members of the type-3 copper protein family, possessing di-cupric active sites which facilitate the binding of dioxygen. While Hcs and POs share a high degree of sequence homology, Hcs have been associated traditionally with oxygen transport whereas POs are catalytic proteins with a role in innate immunity. Evidence gathered in recent years details numerous immune functions for Hc, including an inducible PO activity. Unlike the pro-phenoloxidase activation cascade in arthropods, the endogenous mechanism(s) involved in the conversion of Hc into an immune enzyme is lacking in detail. The overall aim of this research was to characterise the physiological circumstances in which Hc is converted into a PO-like enzyme during immune challenge. A series of biochemical, biophysical and cellular techniques were used to assess the ability of phospholipid liposomes to mimic the well-characterised induction of PO activity in Hc by SDS micelles. Incubation of Hc purified from Limulus polyphemus, in the presence of phosphatidylserine (PS) liposomes, yielded ~ 90% of the PO activity observed upon incubation of Hc with the non-physiological activator, SDS. Phospholipid–induced PO activity in Hc was accompanied by secondary and tertiary structural changes similar to those observed in the presence of SDS. Subsequent analysis revealed that electrostatic interactions appear to be important in the PS-Hc activation complex. In vivo, PS-Hc interactions are assumed to be limited in quiescent cells. However, amebocytes undergoing apoptosis redistribute PS onto the outer leaflet of the plasma membrane, resulting in the potential for increased Hc-PS interactions. In the absence of a reliable culturing technique for L. polyphemus amebocytes, in vitro conditions were optimised for the short term maintenance of this labile cell type. Amebocytes retained viability and functionality in a medium that mimicked most-closely, the biochemical properties of L. polyphemus hemolymph. When presented with a fungal, bacterial or synthetic challenge, ~9% of amebocytes in vitro were found to be phagocytically active. Target internalisation was confirmed via the use of fluorescent quenchers and membrane probes. Within 4 hours of target internalisation, amebocytes underwent apoptosis, characterised by the loss of plasma and mitochondrial membrane potential, increased caspase-3 activity and extracellularisation of PS. Phagocytosis-induced cell death led to a proportional increase in the level of Hc-derived PO activity, suggesting that Hc may be interacting with PS present on terminal amebocyte membranes. The PO activity of Hc was investigated further in order to address an economically important issue; hyperpigmentation in commercial shellfish. While PO enzymes are thought to be the cause of hyperpigmentation in Nephrops norvegicus, evidence presented here suggests that cellular PO is inactivated after freeze-thawing, while extracellular Hc retains stability and displays a heightened level of inducible PO activity under similar treatments. Known PO inhibitors were used successfully to reduce Hc-derived PO activity, with inhibitors assumed to bind Hc in a manner similar to PO-inhibitor complexes. Structural and functional studies of hemocyanins and immune cells presented here provide new insights into the interactions of hemocyanin-activator complexes in invertebrates.

Tarebia granifera is a prosobranch freshwater gastropod from south-east Asia which has invaded other sub-tropical parts of the world. This snail has recently also invaded the iSimangaliso Wetland Park, often reaching population densities of over 20000 ind.mˉ2 and dominating benthic invertebrate communities. A multiple method approach was used to address several aspects of the biology and ecology of this non-native invasive species (NIS). The tolerance of T. granifera to salinity and temperature was investigated through the experimental manipulation of these factors. T. granifera survived exposure to temperatures between 0 ºC and 47.5 ºC. More remarkably, this snail was able to survive a salinity of 30 for 65 - 75 days. Population density and size structure were monitored in estuaries and coastal lakes. T. granifera successfully invaded estuaries despite frequent exposure to high salinity and desiccation. The persistence of T. granifera was largely ensured due to the wider environmental tolerance of adults (20 - 30 mm shell height) which carried an average of 158 ± 12.8 SD brooded juveniles. Multiple introductions were not essential for the success of this parthenogenetic NIS. Using gut fluorescence and carbon budget techniques it was estimated that T. granifera consumes 0.5 - 35% of the total available microphytobenthic biomass per day, or 1.2 - 68% of the daily primary benthic production. The carbon component estimated from the gut fluorescence technique contributed 8.7 - 40.9% of the total gut organic carbon content. A stable isotope mixing model was used together with gut content analysis to estimate the diet of T. granifera and dominant native gastropod species, potentially competing for resources. Results were used in the formulation of an index of isotopic dietary overlap (IDO, %). This approach yielded detailed information both on general changes in ecosystem functioning and specific species interactions. Before/After-Control/Impact (BACI) logic was used in a multivariate approach to separate human perturbations from natural spatio-temporal variability displayed by communities, and to further separate perturbations due to NIS. Human intensification of drought negatively affected biodiversity and T. granifera may exacerbate this problem by displacing native species from critical refugia and contributing towards biotic homogenization. The present findings constitute a contribution to the scientific knowledge on biological invasions and a useful tool towards adaptive management in the iSimangaliso Park. / Thesis (Ph.D.)-University of KwaZulu-Natal, Westville, 2012.

The St Lucia estuarine system, Africa’s largest estuarine lake, is characterised by cyclic changes from hypersaline to oligo/mesohaline conditions in response to alternations between drought and wetter than average years. In addition, St Lucia also experiences stochastic disturbances, such as flooding events that rapidly decrease salinity levels. Due to their sessile and slow moving nature, bivalves are particularly vulnerable to rapid or prolonged changes in the physico-chemical environment. The recent freshwater deprivation crisis that prevailed for the last decade resulted in a significant loss in bivalve species richness within the system. An annotated and illustrated bivalve census revealed the occurrence of twenty-four species within St Lucia between the years 1925 and 2011. However, only six species were recorded during the most recent survey in March 2011. The infaunal razor clam, Solen cylindraceus, and the epifaunal brackwater mussel, Brachidontes virgiliae, are currently the dominant bivalve species within St Lucia. This study, therefore, aimed to record the species richness of bivalves found in Lake St Lucia and to investigate key biological aspects of the two dominant bivalve taxa within the system, under different salinity regimes. Experiments revealed that S. cylindraceus can tolerate salinities between 15 and 65, while B. virgiliae prefers salinity levels ranging from freshwater to 20. The varying tolerance limits, therefore, dictate the distribution of these species during different climatic conditions within the estuarine lake. During wet periods, S. cylindraceus is restricted to the northern reaches, unable to tolerate the oligohaline conditions present in the rest of the system. Conversely, B. virgiliae, often restricted to the Narrows, becomes ubiquitous throughout the system under such conditions. Solen cylindraceus can reach a maximum length of 95 mm. However, in the St Lucia estuarine system, specimens seldom exceed a length of 55 mm, probably because prevailing/re-occurring harsh conditions prevent them from reaching maximum size. In situ measurements of this species also revealed less growth during the first year of life than for the same species in different systems. While B. virgiliae is substantially smaller than S. cylindraceus, the high densities that this species is able to attain makes it an important grazer with the potential to have significant feeding impacts on the local phytoplankton biomass. Results showed that in localised areas, B. virgiliae populations may consume up to eight times the available phytoplankton biomass. These key bivalve species are strongly influenced by the fluctuation in climatic conditions from wet to dry phases. Thus, understanding the effects that climatic shifts have on key estuarine species is essential, as flood and drought events are predicted to increase in frequency, intensity and duration as a result of global climate change. / Thesis (Ph.D.)-University of KwaZulu-Natal, Durban, 2014.

Thesis (Ph. D.)--University of Oregon, 2007. / Typescript. Includes vita and abstract. Includes bibliographical references (leaves 339-383). Also available for download via the World Wide Web; free to University of Oregon users.