Indiana University-Purdue University Indianapolis (IUPUI) / Large protein molecules are abundant in biological cells but are very difficult to study in physiological conditions due to molecular disorder. For large proteins, most structural information is obtained in crystalline states which can be achieved in certain conditions at very low temperature. X-ray and neutron crystallography methods can then be used for determination of crystalline structures at atomic level. However, in solution at room or physiological temperatures such highly resolved descriptions cannot be obtained except in very few cases. Scattering methods that can be used to study this type of structures at room temperature include small-angle x-ray and neutron scattering. These methods are used here to study two distinct proteins that are both classified as glycoproteins, which are a large class of proteins with diverse biological functions. In this study, two specific plasma glycoproteins were used: Fibrinogen (340 kDa) and Alpha 1-Antitrypsin or A1AT (52 kDa). These proteins have been chosen based on the fact that they have a propensity to form very large molecular aggregates due to their tendency to polymerize. One goal of this project is to show that for such complex structures, a combination of scattering methods that include SAXS, SANS, and DLS can address important structural and interaction questions despite the fact that atomic resolution cannot be obtained as in crystallography. A1AT protein has been shown to have protective roles of lung cells against emphysema, while fibrinogen is a major factor in the blood clotting process. A systematic approach to study these proteins interactions with lipid membranes and other proteins, using contrast-matching small-angle neutron scattering (SANS), small angle x-ray scattering (SAXS) and dynamic light scattering (DLS), is presented here. A series of structural reference points for each protein in solution were determined by performing measurements under osmotic stress controlled by the addition of polyethylene glycol-1,500 MW (PEG 1500) in the samples. Osmotic pressure changes the free energy of the molecular mixture and has consequences on the structure and the interaction of molecular aggregates. In particular, the measured radius of gyration (Rg) for A1AT shows a sharp structural transition when the concentration of PEG 1500 is between 33 wt% and 36 wt%. Similarly, a significant structural change was observed for fibrinogen when the concentration of PEG 1500 was above 40 wt%. This analysis is applied to a study of A1AT interacting with lipid membranes and to a study of fibrinogen polymerization in the presence of the enzyme thrombin, which catalyzes the formation of blood clots. The experimental approach presented here and the applications to specific questions show that an appropriate combination of scattering methods can produce useful information on the behavior and the interactions of large protein systems in physiological conditions despite the lower resolution compared to crystallography.

This work presents a comprehensive study on single crystalline LaPt2Si2, in which superconductivity and a charge density wave (CDW) coexist. The usage of density functional theory (DFT) modeling and Inelastic Neutron Scattering has been the primary form of investigation, in order to determine all the characteristic features of the sample taken under consideration. From the results one can observe that the Fermi surface nesting is the primary contributor for the CDW wavevector ~qCDW = (1/3, 0, 0). In addition, the phonon density of states present two typical energy levels, with soft modes in the Pt3-Pt4 layer coherent with the presence of a CDW. The superconducting temperature has been estimated at Tc = 1.6 K. The experimental data from the inelastic instrument High Resolution Chopper Spectrometer (HRC) at the J-PARC neutron source are in good agreement with the theoretical simulations, showing the same energy levels for the polarization phonon modes (from 4 to 18 meV and from 32 to 42 meV). / Denna rapport presenterar en omfattande studie av enkristalls LaPt2Si2 i vilken supraledning och en laddningsdensitetsvåg (CDW) samexisterar. Användandet av DFT-modellering och neutronspridning har varit de huvudsakliga undersökningsmetoderna, för att bestämma alla karakteristiska drag hos det undersökta provet. Från resultaten kan observeras att den inneslutna Fermiytan är den huvudsakliga bidragaren till CDW-vågvektorn~qCDW = (1/3, 0, 0). Vidare visar den närvarande fonontillståndsdensiteten två typiska energinivåer, med mjuka lägen i Pt3-Pt4-skiktet, som stämmer överens med närvaron av en CDW. Den supraledande temperaturen har uppskattats till Tc = 1.6 K. Experimentella data från det inelastiska instrumentet HRC vid J-PARCs neutronkälla stämmer väl överens med teoretiska simuleringar, som visar samma energinivåer för polarisationsfononlägena (från 4 till 18 meV och från 32 till 42 meV).

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This thesis contains the results of the extensive study into the synthesis of nickel niobate (NiNb2O6) including the formation of what was a previously unreported polymorph of the material, as well as the magnetic properties of both cobalt niobate (CoNb2O6) and nickel niobate using techniques including SQUID magnetometry, powder and single crystal x-ray scattering, powder and single crystal neutron scattering and muon spin rotation/relaxation. In cobalt niobate we found extremely long relaxation times in the heat capacity which showed up strongly in muon spin rotation experiments but not in neutron measurements. Additionally, with field applied to the system we see the emergence of spin-wave like structures in the neutron scattering data. Within cobalt niobate the strongest interaction is ferromagnetic and along the chain. The chains themselves are laid out on a triangular fashion and interact, although far more weakly, in an antiferromagnetic manner. This triangular patterning as well as an antiferromagnetic interaction results in interchain frustration, which protects the quasi-1D nature of the system due to the difficulty generated in creating 3D order. In nickel niobate we found that growth conditions caused highly variable changes, and we were able to create two different polymorphs. One polymorph was in the same space group as cobalt niobate, which gave us an opportunity to explore the magnetic difference between a spin-½ and spin-1 magnetic system and in nickel niobate in the new space group we performed an ab initio characterization solving the unit cell structure, the magnetic structure with neutron scattering as well as a magnetic characterization with SQUID magnetometry and muon spin rotation, allowing us to contrast the significant crystallographic differences. For the new polymorph we were able to determine its magnetic structure, characterized by Ising-like spins arranged in frustrated tetrahedra with three of the four points lying in the same plane as the spin, and for both materials we were able to use zero-field μSR data to estimate behaviour near the critical point and determine a critical exponent near the magnetic transitions. In both polymorphs there is evidence of constrained magnetism or reduced dimensionality, although the evidence for low dimensionality is much stronger in the columbite polymorph. / Thesis / Doctor of Philosophy (PhD) / This thesis examines two different niobium-based compounds: cobalt niobate (CoNb2O6) and nickel niobate (NiNb2O6). In these systems the cobalt and nickel atoms provide interesting magnetic properties. Within a magnetic material, the magnetic atoms tend to have their spins align in certain ways. The atoms themselves are fixed to particular sites by the way the material is assembled; an atomic framework. In the case of cobalt niobate, the magnetic atoms are arranged in well-separated chains so that a magnetic atom interacts strongly with its magnetic neighbours within a chain, and weakly with ones that are further away. This is an example of a material that is called `low dimensional'. The chains themselves form triangular patterns, and the interactions between chains are both weaker and antialigned, which creates a frustrated competition between the chains, protecting the low dimensional state by creating conditions where it is hard for all the spins in the material to order. For nickel niobate, the magnetic moments all want to anti-align, or be pointing in the opposite direction as its nearest neighbour. The magnetism is `frustrated' because each magnetic atom is tetrahedrally connected to three other atoms, so it cannot meet that condition. This can be visualized by drawing a triangle and trying to make each corner have an arrow pointing up or down. The third corner of the triangle cannot satisfy this requirement for its neighbours (one up and one down arrow). Both decreased dimensionality and frustration can lead to the emergence of novel quantum states of matter at low temperature. This thesis explores these materials with that in mind.

Yes / Understanding the structure-property relationships of drug delivery system (DDS) components is critical for their development and the prediction of bodily performance. This study investigates the effects of introducing polyethylene oxide (PEO) homopolymers, over a wide range of molecular weights, into Pluronic injectable smart hydrogel formulations. These smart DDSs promise to enhance patient compliance, reduce adverse effects and dosing frequency. Pharmaceutically, Pluronic systems are attractive due to their unique sol-gel phase transition in the body, biocompatibility, safety and ease of injectability as solutions before transforming into gel matrices at body temperature. This paper presents a systematic and comprehensive evaluation of gelation and the interplay of microscopic and macroscopic properties under both equilibrium and non-equilibrium conditions in controlled environments, as measured by rheology in conjunction with time-resolved Small Angle Neutron Scattering (SANS). The non-equilibrium conditions investigated in this work offer a better understanding of the two polymeric systems’ complex interactions affecting the matrix thermo-rheological behaviour and structure and therefore the future release of an active pharmaceutical ingredient from the injectable DDS.

Das Peptid Amyloid-beta wird seit vielen Jahren mit der Alzheimer''schen Demenz in Verbindung gebracht, aber die Verbindung zwischen dem Peptid und der Herkunft der Symptome bleibt unklar. Eine neue Hypothese besagt, dass Wechselwirkungen von Mono- oder Oligomeren des Amyloid-beta mit neuronalen Zellmembranen zu Veränderungen der Membran-Doppelschichtsruktur führen und Störungen dynamischer Prozesse in den Membranen verursachen können. Mit Methoden der Röntgen- und Neutronenstreuung wurden die Struktur und Dynamik von Modellmembranen und Änderungen durch den Einfluss des Peptids Amyloid-beta auf die Modellmembranen untersucht. Es konnte gezeigt werden, dass Monomere des Peptidfragments Amyloid-beta 22-40 in anionische Lipidmembranen eingebaut werden. Mittels quasielastischer-inkohärenter Neutronenstreuung wurde die Dynamik von Lipidmembran untersucht. Ein Anteil von 1,5 mol % Amyloid-beta 22-40 in einer Lipidmembran bei 30°C verursacht eine Verringerung der Diffusionskoeffizienten sowohl der Schwerpunktbewegung der Lipide im ns-Bereich als auch der Dynamik der Fettsäurereste im ps-Bereich. Andererseits wird in der Gelphase der Lipidmembran bei 15°C ein Anstieg der Diffusionskoeffizienten beider Prozesse beobachtet. Eine Serie von Lipidproben mit unterschiedlichem Cholesteringehalt und eingelagerten Peptiden Amyloid-beta 1-42 und Amyloid-beta 22-40 wurde Mittels Röntgendiffraktion charakterisiert. Für das Peptid Amyloid-beta 22-40 wurden zwei Positionen gefunden, eine auf der Oberfläche der Membran, eine zweite in der Membran eingelagert. Das Peptid Amyloid-beta 1-42 ist teilweise in die Membran eingelagert und ist in einer 40 mol % Cholesteringehaltige Membrane durch eine einzelne Position modelliert. Zusätzlich wird der Entwurf und die Inbetriebnahme der BerILL Feuchtekammer beschrieben. / The peptide amyloid-beta has long been associated with Alzheimer’s disease; however the link between the peptide and the origin of symptoms is poorly understood. An emerging hypothesis is that monomeric and oligomeric forms of the peptide interact with neuronal membranes, resulting in perturbations in the bilayer structure and in the dynamic processes which take place in the bilayer. Using X-ray and neutron scattering techniques, the structure and dynamics of model lipid membranes and the changes which arise in the presence of amyloid-beta peptide fragments have been studied. Monomers of the peptide fragment amyloid-beta 22-40 were found to intercalate into an anionic lipid bilayer. Through quasi-elastic neutron scattering, dynamics of bilayer lipids were observed. The presence of 1.5 mol % of the peptide results in a decrease in the diffusion coefficients for lipid centre of mass motion on the nanosecond time-scale, as well as for the lipid tail dynamics on the picosecond scale at 30°C. On the other hand, in the gel-phase of the lipid, at 15°C, an increase in the diffusion coefficients for both of these processes was observed. A series of samples with various cholesterol content and either the amyloid-beta 22-40 peptide fragment or the amyloid-beta 1-42 full length peptide was characterized using X-ray diffraction. The amyloid-beta 22-40 peptide was found to populate two positions, on the surface and embedded in the bilayer. The amyloid-beta 1-42 peptide embeds itself into the membrane, and is modelled by a single population for high cholesterol levels (40 mol % cholesterol). In addition, the design and commissioning of the BerILL humidity chamber, a sample environment with precise temperature and humidity control compatible with neutron scattering experiments is presented.

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Le but du travail est d'étudier la structure supramoléculaire de mélanges de tensioactif hydrophile, n-octyl-beta-glucoside (C8G1), et d'un extractant d'ions métalliques hydrophobe, le tributyl-n-phosphate (TBP), en présence d'eau, d'huile et de sels. Les systèmes classiques d'extraction ionique (composés d'une phase aqueuse, d'huile et d'extractant dont le but est d'extraire un soluté de la phase polaire sont passés en revue. L'aspect colloïdal et les transitions de phases que l'on retrouve dans ces systèmes sont souvent décrits singulièrement. Nous avons transposé l'approche « diagramme de phases » issue de la physico-chimie des systèmes moléculaires organisés à ces systèmes d'extractant afin d'orienter globalement l'analyse de ces systèmes complexes. La discussion est basée sur des considérations géométriques. Un modèle thermodynamique a été développé en considérant les contraintes d'empilement des ces extractants dans le film moléculaire formant les micelles inverses d'extractant dans l'huile. Ce modèle a permis de prédire la solubilité de l'eau au sein de ces micelles inverses ainsi que leurs tailles obtenues expérimentalement. Dans une deuxième partie, le comportement physico-chimique des phases aqueuses et organiques composées respectivement d'eau/C8G1 et de TBP/huile/eau ont été étudiées, en s'intéressant particulièrement aux effets de sels, par des techniques de diffusion de rayons X aux petits angles, diffusion dynamique de la lumière et de spectroscopie UV-visible. Dans la dernière partie la description complète de la microémulsion en faisant varier la balance hydrophile-hydrophobe du mélange C8G1 et TBP a été obtenue en combinant des mesures de diffusion de neutrons aux petits angles et d'analyse chimique (Karl-Fischer, Carbone Organique Total, ICP-OES…). Le comportement co-surfactant du TBP a été déterminé par comparaison aux co-surfactants classiques que sont les n-alcools (4<n<8). Les compositions de films moléculaires mixtes de C8G1/TBP et de C8G1/n-hexanol, obtenues expérimentalement, ont été confirmées par un modèle basé sur des paramètres géométriques moléculaires. Nous avons tenté d'exploiter les propriétés interfaciales de ces molécules pour le contrôle des cinétiques d'extraction liquide-liquide d'ion et la séparation d'ion « sans solvant » par flottation. / The presented work describes the supramolecular structure of mixtures of a hydrophilic surfactant n-octyl-beta-glucoside (C8G1), and the hydrophobic metal ion extractant tributylphosphate (TBP) in n-dodecane/water as well as in the presence of salts.In the first part, basic solvent extraction system, composed of water, oil and extractant, will be introduced. The focus, however, lies on the extraction of multivalent metal ions from the aqueous phase. During this extraction process and in the following thermodynamic equilibrium, aggregation and phase transition in supramolecular assemblies occur, which are already described in literature. Notably, these reports rest on individual studies and specific conclusions, while a general concept is still missing. We therefore suggest the use of generalized phase diagrams to present the physico-chemical behaviour of (amphiphilic) extractant systems. These phase diagrams facilitated the development of a thermodynamic model based on molecular geometry and packing of the extractant molecules in the oil phase. As a result, we are now in the position to predict size and water content of extractant aggregates and, thus, verify the experimental results by calculation.Consequently, the second part presents a systematic study of the aqueous and organic phase of water/C8G1 and water/oil/TBP mixtures. The focus lies on understanding the interaction between metal ions and both amphiphilic molecules by means of small angle x-ray scattering (SAXS), dynamic light scattering (DLS) and UV-Vis spectroscopy. We confirmed the assumption that extraction of metal ions is driven by TBP, while C8G1 remains passive. In the third and last part, microemulsions of C8G1, TBP, water (and salt) and n-dodecane are characterized by small angle neutron scattering (SANS), and chemical analytics (Karl Fischer, total organic carbon, ICP-OES,...). The co-surfactant behaviour of TBP was highlighted by comparison to the classical n-alcohol (4<n<8) co-surfactants. The compositions of the C8G1/TBP and C8G1/n-hexanol interfacial mixed films obtained experimentally were confirmed by the prediction of a model based on the molecular geometrical parameters. We furthermore exploit the interfacial properties of these molecules to control the kinetics of liquid-liquid extraction and attempt a “solvent free” ion separation using flotation.

Cette thèse présente une étude des solutions aqueuses de trois complexes de polyélectrolytes (PECs) modèles. Les PECs résultent de la complexation de deux polyélectrolytes linéaires de charge opposée: un polycation (le PDADMA) et trois polyanions de longueur de persistance non électrostatique distinctes: le polystyrene sulfoné (PSS), le poly(α-méthyl styrène sulfoné) (PαMSS) et l’acide hyaluronique (HA). En plus de l’influence de la rigidité intrinsèque des polyanions sur la formation et la structure des PECs, les effets de la force ionique et de la méthode de préparation des solutions aqueuses de PECs ainsi que l’influence de la concentration des solutions binaires de polyélectrolytes initiales ont également été abordés. Nous suggérons que le processus de complexation entre polycations et polyanions en régimes semidilué et concentré est analogue à une gélification. Il y a toutefois une différence entre les deux complexes qui est reliée à la différence de rigidité intrinsèque. / This PhD thesis presents a study of the aqueous solutions of three model polyelectrolyte complexes (PECs). PECs were formed between hydrophilic and highly charged linear macrocations of poly(diallyldimethyl ammonium) (PDADMA) and linear macroanions of distinct intrinsic persistence lengths: sulfonated polystyrene (PSS), sulfonated poly(α-methyl styrene) (PαMSS) and hyaluronate (HA). In addition to the effect of the macroion stiffness on the PEC formation and structure, those of the ionic strength and the way of preparing the PEC aqueous solutions as well as that of the concentration regimes of the initial PE aqueous solutions were also tackled. We suggest the complexation between macrocations and macroanions in the semidilute and concentrated regimes can be described as a universal gelation process. A difference between PDADMA-PSS and PDADMA-HA complexes is related to the primary self-assembling process and is associated with the distinct structural models for PECs.