L'objectif général de cette thèse est d'étudier les mécanismes de transport des déchets marins flottants ainsi queleur accumulation potentielle en Méditerranée, en s'appuyant sur la modélisation numérique de leur dérive ainsique sur des observations in-situ de leur distribution. La dynamique du transport des déchets marins y estnotamment analysée en terme d'échelles caractéristiques du bassin, en partant de la grande échelle jusqu'auxéchelles côtière et littorale.Dans un premier temps, l'examen d'un ensemble d'expériences Lagrangiennes numériques a permis d'identifierdans le bassin des zones probables d'accumulation non permanentes à grande échelle (Mansui et al., 2015a).L'impact à l'échelle côtière d'un courant de bord (Courant Nord) et des forçages atmosphériques sur ladistribution locale et l'échouage des déchets marins flottants a ensuite pu être estimé en utilisant notammentdes données originales recueillies en mer et à terre (Mansui et al., 2015b, en révision). / The main objective of this work is to study the floating marine debris transport mechanisms and their potentialaccumulation in the Mediterranean Sea, using numerical modelling and in-situ observations of debris. Thetransport dynamics is analysed in terms of typical scales in the basin, from the large scale to the coastal andlocal scales.First, the analysis of a Lagrangian experience data set show the potential existence of non-permanent and largeretention areas (Mansui et al., 2015a). In a second stage, the coastal impact of a boundary current (the NorthernCurrent) and atmospheric forcings on the local distribution and stranding of floating marine litter has beenestimated (Mansui et al., 2015b, under revision), using an original set of data combining offshore sightings andbeaching surveys.

La formation de troubles physico-chimiques pendant le stockage de boissons clarifiées préoccupe la filière cidricole. Ces troubles sont dus à des interactions entre différents constituants de la boisson, générant des agrégats visibles. Ce travail présente un double objectif : étudier la composition des troubles afin de déterminer les familles chimiques impliquées, puis étudier les mécanismes des interactions responsables de l’apparition de ces troubles. Pour cela, la composition des troubles a été analysée dans trois boissons cidricoles (cidre, jus de pomme et pommeau). Les résultats ont montré l’implication des composés phénoliques et ont conduit à l’hypothèse selon laquelle l’oxydation de ces composés jouerait un rôle prépondérant dans leur agrégation. Des protéines ont également été dosées en grandes concentrations dans des troubles de jus de pomme, suggérant leur implication dans leur formation.Ces hypothèses ont été vérifiées par deux approches en solutions modèles : en modèle pommeau et en modèle jus de pomme. Ces travaux ont mis en évidence des troubles de différentes natures en fonction de la boisson étudiée. D’une part, les troubles des cidres et des pommeaux s’expliqueraient essentiellement par l’auto-agrégation des procyanidines oligomères consécutive à leur oxydation. Les marqueurs moléculaires impliqués dans la formation de trouble réversible ont pu être identifiés. D’autre part, les troubles de certains jus de pomme, relativement pauvres en composés phénoliques et riches en protéines, seraient provoqués par la dénaturation de protéines de défense des plantes / Physico-chemical haze appearance during storage of clarified apple-based beverages is a concern for producers. These hazes are caused by interactions between several constituents of the beverage that lead to the formation of visible aggregates. This work had two main goals: analyze the composition of hazes in order to determine which families of compounds are responsible for their formation, and understand which mechanisms are involved. First, the composition of the haze gathered from three apple-based beverages (cider, apple juice and pommeau) was analyzed. The results revealed the implication of phenolic compounds and led to the hypothesis that their oxidation was probably one of the main factors responsible for haze formation. Proteins were found in quite large quantities in some apple juice hazes, which suggests their involvement in haze formation in this beverage.These two hypotheses have been verified using two model approaches: in a model pommeau and in a model apple juice. This work evidenced that different kinds of hazes exist in apple-based beverages. On the one hand, haze in pommeaux and ciders is mainly explained by procyanidin oligomers self-aggregation induced by their oxidation, with possible interactions with other beverage constituents. On the other hand, haze in some apple juices, which probably contain low polyphenol and high protein levels, is triggered by “Pathogenesis-Related Proteins” denaturation that lead to their self-aggregation, in interaction with oligomeric procyanidins.

Le repliement et la stabilité des protéines dépendent des conditions physico-chimiques de leur environnement. En particulier, le pH, la température, l’agitation et les interactions avec d’autres macromolécules ou avec les interfaces (liquide–surfaces des matériaux ; air-liquide ; etc.) sont connues pour induire des phénomènes de dénaturation et d’agrégation des protéines.Le contrôle de la stabilité des protéines thérapeutiques représente un enjeu médical et économique pour l’industrie pharmaceutique. L’insuline, qui est la protéine thérapeutique la plus produite, est connue in vitro pour former des fibres amyloïdes induites par les surfaces hydrophobes. Les agrégations amyloïdes sont également impliquées dans un certain nombre de pathologies, notamment humaines et animales présentant de forts enjeux de santé publique et économiques.Cette thèse traite en particulier de l’agrégation amyloïde à la surface des matériaux en utilisant l’insuline comme protéine modèle. Les travaux précédents réalisés par notre équipe ont démontré que des peptides de courte longueur avaient la capacité de modifier très significativement la cinétique d’agrégation induite par la surface des matériaux, et ce à des concentrations sub-stœchiométriques par rapport à l'insuline. En particulier les peptides adoptant une conformation secondaire en feuillet beta une fois adsorbés sur les surfaces hydrophobes, induisent une réduction drastique de la durée de nucléation de fibres amyloïdes d’insuline.Dans les travaux présentés ici nous avons découvert des séquences peptidiques présentant, toujours à des concentrations sub-stœchiométriques, deux effets antagonistes sur la cinétique de l’agrégation amyloïde de l’insuline. Le premier effet, coopératif et localisé à la surface de matériaux hydrophobes, résulte en une accélération de la nucléation. A l’inverse le second effet provient des peptides en solution et résulte en une puissante inhibition à la fois de la nucléation et de l’élongation des fibres.Nous avons premièrement caractérisé quantitativement ces effets pour un ensemble de peptides possédant des séquences de type (LK)nL, et investigué les mécanismes à l’origine du phénomène accélérateur. Des mesures quantitatives de fluorescence (Thioflavine T, marquage fluorescent du peptide) ont permis de montrer que l’adsorption coopérative des peptides sur la surface du matériau était responsable de l’accélération de la vitesse de nucléation. Pour l’effet inhibiteur, provenant des peptides en solution, nous avons démontré que cet effet résulte de la liaison des peptides sur l’insuline fibrillaire et qu’il est médié par les charge.De surcroit nous avons étudié la localisation de la nucléation et de l’apparition des premiers agrégats par microscopie à fluorescence. Nous avons observé que les zones situées à l’interface triple matériau-air-solution et subissant une contrainte de cisaillement élevé étaient les sites préférentiels d’apparition des premiers agrégats amyloïdes et donc très probablement les régions dominantes en termes de nucléation.Nous avons enfin développé une technique permettant une croissance localisée, patternable et induite par la lumière d’agrégats amyloïde d’insuline sur une surface de verre. Cette voie d’agrégation singulière ne présente pas de phase de nucléation apparente et dépend strictement de la présence de Thioflavine T. Nous avons montré que la Thioflavine T insérée entre les feuillets béta et qui peut être excitée à 440 nm fournit localement l’énergie nécessaire pour la transition de conformation de l’insuline native adsorbée vers l’état agrégé. Cette méthode permet d’obtenir une croissance différentielle entre des zones de surface hydrophile et hydrophobe. / The folding and stability of proteins depend on the physico-chemical conditions of their environment. Especially pH, temperature, stirring and interactions with other macromolecules or with interfaces (liquid-material surfaces; air-liquid; etc.) are known to induce protein denaturation and aggregation phenomena.The control of therapeutic protein stability represents a medical and economic challenge for the pharmaceutic industry. For instance insulin, which is the most s model produced therapeutic protein, is known to form amyloid aggregates in vitro induced by hydrophobic surfaces. Amyloid aggregates are also involved in several pathologies including human and animal diseases of high economic and public health impact.This thesis focuses on amyloid aggregation at material surfaces using insulin as a model protein. Previous work from our team have demonstrated that short peptides have the ability to significantly interfere with the kinetics of surface-driven amyloid aggregation and this at sub-stoichiometric concentrations with respect to insulin. In particular peptides adopting a beta-sheet secondary structure when adsorbed on hydrophobic surfaces, were able to reduce the nucleation time of insulin aggregation.In the present work we have discovered peptide sequences presenting, again at sub-stoichiometric concentrations, two antagonistic effects on insulin aggregation kinetics. The first consists in a cooperative reduction of the nucleation time and operates via peptides bound to the material surface. The second, on the other hand, results in a powerful inhibition of both nucleation and fiber elongation via peptides remaining in solution.We have first quantitatively characterized these effects on a set of peptides presenting alternate primary sequences of the type (LK)nL, and investigated the underlying mechanisms promoting insulin nucleation. Quantitative fluorescence measurements (Thioflavin T, fluorescent labelling of the peptide) have shown that the cooperative adsorption of peptides on hydrophobic material surfaces was responsible for the reduction of the insulin nucleation time. We have then shown that the inhibitory effect results from the binding of peptides in solution to fibrillar insulin aggregates and that this effect is mediated by charges.In addition we studied the localization of the insulin nucleation and of the appearance of the first aggregates using fluorescence microscopy. We observed the preferential appearance of the first ThT positive aggregates at the solid-liquid-air triple interface undergoing high shear stress, making these regions the predominant nucleation sites.We eventually developed a technique allowing a localized and patterned growth of light-induced insulin aggregates on glass surfaces. This atypical aggregation pathway does not present any observable lag time and depends strictly on Thioflavin T. We have shown that the ThT inserted between the cross beta-sheets and which can be excited at 440 nm locally provides the energy required for the conformational transition of the native insulin into the aggregated one. This method can be used to obtain a differential amyloid growth between surface area of different hydrophobicity.

Abstract not available

Doctor of Philosophy(PhD) / BCC is the commonest cancer in European-derived populations and Australia has the highest recorded incidence in the world, creating enormous individual and societal cost in management of this disease. The incidence of this cancer has been increasing internationally, with evidence of a 1 to 2% rise in incidence in Australia per year over the last two decades. The main four epidemiological risk factors for the development of BCC are ultraviolet radiation (UVR) exposure, increasing age, male sex, and inability to tan. The pattern and timing of UVR exposure is important to BCC risk, with childhood and intermittent UVR exposure both associated with an increased risk. The complex of inherited characteristics making up an individual’s ‘sun sensitivity’ is also important in determining BCC risk. Very little is known about population genetic susceptibility to BCC outside of the rare genodermatosis Gorlin syndrome. Mutations in the tumour suppressor gene patched (PTCH) are responsible for this BCC predisposition syndrome and the molecular pathway and target genes of this highly conserved pathway are well described. Derangments in this pathway occur in sporadic BCC development, and the PTCH gene is an obvious candidate to contribute to non-syndromic susceptibility to BCC. The melanocortin 1 receptor (MC1R) locus is known to be involved in pigmentary traits and the cutaneous response to UVR, and variants have been associated with skin cancer risk. Many other genes have been considered with respect to population BCC risk and include p53, HPV, GSTs, and HLAs. There is preliminary evidence for specific familial aggregation of BCC, but very little known about the causes. 56 individuals who developed BCC under the age of 40 in the year 2000 were recruited from the Skin and Cancer Foundation of Australia’s database. This represents the youngest 7 – 8% of Australians with BCC from a database that captures approximately 10% of Sydney’s BCCs. 212 of their first degree relatives were also recruited, including 89 parents and 123 siblings of these 56 probands. All subjects were interviewed with respect to their cancer history and all reports of cancer verified with histopathological reports where possible. The oldest unaffected sibling for each proband (where available) was designated as an intra-family control. All cases and control siblings filled out a questionnaire regarding their pigmentary and sun sensitivity factors and underwent a skin examination by a trained examiner. Peripheral blood was collected from these cases and controls for genotyping of PTCH. All the exons of PTCH for which mutations have been documented in Gorlin patients were amplified using PCR. PCR products were screened for mutations using dHPLC, and all detectable variants sequenced. Prevalence of BCC and SCC for the Australian population was estimated from incidence data using a novel statistical approach. Familial aggregation of BCC, SCC and MM occurred within the 56 families studied here. The majority of families with aggregation of skin cancer had a combination of SCC and BCC, however nearly one fifth of families in this study had aggregation of BCC to the exclusion of SCC or MM, suggesting that BCCspecific risk factors are also likely to be at work. Skin cancer risks for first-degree relatives of people with early onset BCC were calculated: sisters and mothers of people with early-onset BCC had a 2-fold increased risk of BCC; brothers had a 5-fold increased risk of BCC; and sisters and fathers of people with early-onset BCC had over four times the prevalence of SCC than that expected. For melanoma, the increased risk was significant for male relatives only, with a 10-fold increased risk for brothers of people with early-onset BCC and 3-fold for fathers. On skin examination of cases and controls, several phenotypic factors were significantly associated with BCC risk. These included increasing risk of BCC with having fair, easyburning skin (ie decreasing skin phototype), and with having signs of cumulative sun damage to the skin in the form of actinic keratoses. Signs reflecting the combination of pigmentary characteristics and sun exposure - in the form of arm freckling and solar lentigines - also gave subjects a significantly increased risk BCC. Constitutive red-green reflectance of the skin was associated with decreased risk of BCC, as measured by spectrophotometery. Other non-significant trends were seen that may become significant in larger studies including associations of BCC with propensity to burn, moderate tanning ability and an inability to tan. No convincing trend for risk of BCC was seen with the pigmentary variables of hair or eye colour, and a non-significant reduced risk of BCC was associated with increasing numbers of seborrhoeic keratoses. Twenty PTCH exons (exons 2, 3, 5 to 18, and 20 to 23) were screened, accounting for 97% of the coding regions with published mutations in PTCH. Nine of these 20 exons were found to harbour single nucleotide polymorphisms (SNPs), seen on dHPLC as variant melting curves and confirmed on direct sequencing. SNPs frequencies were not significantly different to published population frequencies, or to Australian general population frequencies where SNP database population data was unavailable. Assuming a Poisson distribution, and having observed no mutations in a sample of 56, we can be 97.5% confident that if there are any PTCH mutations contributing to early-onset BCC in the Australian population, then their prevalence is less than 5.1%. Overall, this study provides evidence that familial aggregation of BCC is occurring, that first-degree relatives are at increased risk of all three types of skin cancer, and that a combination of environmental and genetic risk factors are likely to be responsible. The PTCH gene is excluded as a major cause of this increased susceptibility to BCC in particular and skin cancer in general. The weaknesses of the study design are explored, the possible clinical relevance of the data is examined, and future directions for research into the genetics of basal cell carcinoma are discussed.

Oxidative damage has been suggested to play a key role in the pathogenesis of atherosclerosis and other cardiovascular disease. Increased free radical production induced by oxidative stress can oxidise low density lipoproteins, activates platelets, induces endothelial dysfunction and disturbs glucose transport by consuming endogenous antioxidants. Using a combination, of in vitro and in vivo experimental models, the primary aims of the studies undertaken for this thesis were to examine whether different antioxidants could negate risk factors leading to thrombosis, atherosclerosis and other cardiovascular diseases. The studies utilised the mechanisms involved in platelet activity and glucose uptake by skeletal muscle myotubes. The first study determined if olive leaf extract would attenuate platelet activity in healthy human subjects. Blood samples (n=11) were treated with five different concentrations of extract of Olea europaea L. leaves ranging from 5.4£gg/mL to 54£gg/mL. A significant reduction in platelet activity (pless than0.001) and ATP release from platelets (p=0.02) was observed with 54£gg/mL olive leaf extract. The next crossover study compared the effect of exercise and antioxidant supplementation on platelet function between trained and sedentary individuals. An acute bout of 1 hour exercise (sub maximal cycling at 70% of VO2max) was used to induce oxidative stress in 8 trained and 8 sedentary male subjects, before and after one week supplementation with 236 mg/day of cocoa polyphenols. Baseline platelet count and ATP release increased significantly (pless than0.05) after exercise in all subjects. Baseline platelet numbers in the trained were higher than in the sedentary (235¡Ó37 vs. 208¡Ó34 x109/L, p less than 0.05), whereas platelet activation in trained subjects was lower than sedentary individuals (51¡Ó6 vs. 59¡Ó5%, p less than0.05). Seven days of cocoa polyphenol supplementation did not change platelet activity compared to the placebo group. The third study determined the effect of 5 weeks of either 100mg/day £^-Tocopherol (n=14), 200mg/d £^-Tocopherol (n=13) or placebo (n=12) on platelet function, lipid profile and the inflammatory marker C-reactive protein. Blood £^-tocopherol concentrations increased significantly (pless than0.05) relative to dose. Both doses attenuated platelet activation (pless than0.05). LDL cholesterol, platelet aggregation and mean platelet volume were decreased by 100mg/d £^-tocopherol (all pless than0.05). The final study determined the effect of glucose oxidase induced oxidative stress and £^-tocopherol treatment on glucose transport and insulin signalling in cultured rat L6 muscle cells. One hour treatment with 100mU/mL glucose oxidase significantly decreased glucose uptake both with and without 100nM insulin stimulation (pless than0.05). Pre-treatment with 100ƒÝM and 200ƒÝM £^-tocopherol partially protected cells from the effect of glucose oxidase, whereas 200ƒÝM £^-tocopherol restored both basal and insulin stimulated glucose transport to control levels. Glucose oxidase-induced oxidative stress did not impair basal or insulin stimulated phosphorylation of Akt or AS160, but 200ƒÝM £^-tocopherol improved insulin-stimulated phosphorylation of these proteins. In summary, the results from the studies undertaken for this thesis provide evidence that antioxidant supplementation maintains normal platelet function, exerts a positive effect on blood lipid profile and improves glucose uptake in normal healthy asymptomatic population as well as under conditions of induced oxidative stress. Antioxidants including foods rich in cocoa, olive and gamma tocopherol have the potential to combat oxidative stress induced risk factors leading to cardiovascular diseases.

<p>Denna undersökning gjordes för att studera solitära steklars boplatsval speciellt med avseende på spatiala mönster. Aggregat av lämpliga bohål (<em>bibatterier</em>) tillverkades och gjordes tillgängliga förfrilevande steklar. Resultatet visade att steklar tenderar att anlägga bon i närheten av andra stekelbon. Ingen tendens fanns att anlägga bon i centralt belägna positioner. Steklarna verkar också föredra att anlägga bon till vänster om en tänkt mittllinje på bibatterierna. Aggregation kan vara ett sätt att undgå parasitering och predation vid boplatsen. Om detta orsakade aggregationstendensen var det dock något oväntat att inte också en central tendens kunde påvisas. Att steklarna föredrog bohål i bibatteriernas vänstra del är svårt att förklara.</p>

<p>The wide spread use of IEEE Wireless LAN 802.11 in battery operated mobile devices introduced the need of power consumption optimization while meeting Quality-of-Service (QoS) requirements of applications connected through the wireless network. The IEEE 802.11 standard specifies a baseline power saving mechanism, hereafter referred to as standard Power Save Mode (PSM), and the IEEE 802.11e standard specifies the Automatic Power Save Delivery (APSD) enhancement which provides support for real-time applications with QoS requirements. The latest amendment to the WLAN 802.11 standard is the IEEE 802.11n standard which enables the use of much higher data rates by including enhancements in the Physical and MAC Layer. In this thesis, different 802.11n MAC power saving and QoS optimization possibilities are analyzed comparing against existing power saving mechanisms.</p><p>Initially, the performance of the existing power saving mechanisms PSM and Unscheduled-APSD (UAPSD) are evaluated using the 802.11n process model in the OPNET simulator and the impact of frame aggregation feature introduced in the MAC layer of 802.11n was analyzed on these power saving mechanisms. From the performance analysis it can be concluded that the frame aggregation will be efficient under congested network conditions. When the network congestion level increases, the signaling load in UAPSD saturates the channel capacity and hence results in poor performance compared to PSM. Since PSM cannot guarantee the minimum QoS requirements for delay sensitive applications, a better mechanism for performance enhancement of UAPSD under dynamic network conditions is proposed.</p><p>The functionality and performance of the proposed algorithm is evaluated under different network conditions and using different contention settings. From the performance results it can be concluded that, by using the proposed algorithm the congestion level in the network is reduced dynamically thereby providing a better power saving and QoS by utilizing the frame aggregation feature efficiently.</p>

<p>Wegener´s granulomatosis (WG) is an unusual, serious, systemic vasculitis with specific clinical findings. The studies in this thesis aim at broadening our understanding of the aetiology and outcome of WG.</p><p>Patients with WG were identified in the In-patient Register 1975-2001. During this time the incidence increased three-fold, and neither ANCA-related increased awareness, nor diagnostic drift, seem to fully explain this trend, but it is still unclear if a true rise in incidence exists. </p><p>Anti- neutrophil cytoplasmic antibodies (ANCA) have been presented as highly specific for vasculitis. In a series of consecutive cANCA/PR3-ANCA positive patients, we investigated the positive predictive value for ANCA, and the outcome of patients with a positive cANCA/PR3-ANCA but not vasculitis. These patients have a low future risk of developing vasculitis, possibly indicating that ANCA, in this setting, reflects neutrophil activating properties not specific to vasculitis.</p><p>By linkage of the WG-cohort, and randomly selected population controls, to the Multi-generation register, we identified all first-degree relatives and spouses of patients and controls, totally encompassing some 2,000 patients and 70,000 relatives. Familial aggregation of WG was the exception, with absolute risks of < 1 per 1000.However, relative risks in first-grade relatives amounted to 1.56 (95% CI 0.35-6.90) such that a moderate familial aggregation cannot be excluded.</p><p>In the WG-cohort, cancer occurrence and risk was compared to that of the general population. Patients with WG have an overall doubled risk of cancer, with particularly increased risks of bladder-cancer, haematopoietic cancers including lymphomas and squamous skin-cancer. In a case-control study nested within the WG-cohort, treatment with cyclophosphamide was compared among bladder-cancer patients and matched cancer-free controls. Absolute risk of bladder cancer as high as 10% some years after diagnosis were found, and this risk can partly be attributed to cyclophosphamide-treatment, with a dose-response relationship.</p>

Molecular computations based on quantum mechanics and statistical mechanics have been applied to the understanding and quantification of processes leading to the degradation of therapeutic proteins. In particular, we focus on oxidation and aggregation. Specifically, two reactions, hydrogen transfer of hydrogen peroxide to form water oxide and the oxidation of dimethyl sulfide (DMS) by hydrogen peroxide to form dimethyl sulfoxide, were studied as models of these processes in general. Reaction barriers of the hydrogen transfer of H₂O₂ are in average of 10 kcal/mol or higher than the oxidation of DMS. Therefore, a two step oxidation mechanism in which the transfer of hydrogen atom occurs first to form water oxide and the transfer of oxygen to substrate occurs as the second step, is unlikely to be correct. Our proposed oxidation mechanism does not suggest a pH dependence of oxidation rate within a moderate range around neutral pH (i.e. under conditions in which hydronium and hydroxide ions do not participate directly in the reaction), and it agrees with experimental observations over moderate pH values. In the field of aggregation, we have developed a relatively simple approach for computing the change in chemical potential of a protein upon addition of an excipient (cosolute) to the protein solution. We have also developed a general approach to the design of excipients to prevent aggregation and are currently testing it experimentally. / Singapore-MIT Alliance (SMA)