Biological cells consist of many subunits that form distinct compartments and work together to allow for life. These compartments are clearly separated from each other and their sizes are often strongly correlated with cell size. Examples for those structures are centrosomes, which we consider in this thesis. Centrosomes are essential for many processes inside cells, most importantly for organizing cell division, and they provide an interesting example of cellular compartments without a membrane. Experiments suggest that such compartments can be described as liquid-like droplets. In this thesis, we suggest a theoretical description of the growth phase of centrosomes. We identify a possible mechanism based on phase separation by which the centrosome may be organized. Specifically, we propose that the centrosome material exists in a soluble and in a phase separating form. Chemical reactions controlling the transitions between these forms then determine the temporal evolution of the system. We investigate various possible reaction schemes and generally find that droplet sizes and nucleation properties deviate from the known equilibrium results. Additionally, the non-equilibrium effects of the chemical reactions can stabilize multiple droplets and thus counteract the destabilizing effect of surface tension. Interestingly, only a reaction scheme with autocatalytic growth can account for the experimental data of centrosomes. Here, it is important that the centrioles found at the center of all centrosomes also catalyze the production of droplet material. This catalytic activity allows the centrioles to control the onset of centrosome growth, to stabilize multiple centrosomes, and to center themselves inside the centrosome. We also investigate a stochastic version of the model, where we find that the autocatalytic growth amplifies noise. Our theory explains the growth dynamics of the centrosomes of the round worm Caenorhabditis elegans for all embryonic cells down to the eight-cell stage. It also accounts for data acquired in experiments with aberrant numbers of centrosomes and altered cell volumes. Furthermore, the model can describe unequal centrosome sizes observed in cells with disturbed centrioles. Our example thus suggests a general picture of the organization of membrane-less organelles.:1 Introduction 1.1 Organization of the cell interior 1.2 Biology of centrosomes 1.2.1 The model organism Caenorhabditis elegans 1.2.2 Cellular functions of centrosomes 1.2.3 The centriole pair is the core structure of a centrosome 1.2.4 Pericentriolar material accumulates around the centrioles 1.3 Other membrane-less organelles and their organization 1.4 Phase separation as an organization principle 1.5 Equilibrium physics of liquid-liquid phase separation 1.5.1 Spinodal decomposition and droplet formation 1.5.2 Formation of a single droplet 1.5.3 Ostwald ripening destabilizes multiple droplets 1.6 Non-equilibrium phase separation caused by chemical reactions 1.7 Overview of this thesis 2 Physical Description of Centrosomes as Active Droplets 2.1 Physical description of centrosomes as liquid-like droplets 2.1.1 Pericentriolar material as a complex fluid 2.1.2 Reaction-diffusion kinetics of the components 2.1.3 Centrioles described as catalytic active cores 2.1.4 Droplet formation and growth kinetics 2.1.5 Complete set of the dynamical equations 2.2 Three simple growth scenarios 2.2.1 Scenario A: First-order kinetics 2.2.2 Scenario B: Autocatalytic growth 2.2.3 Scenario C: Incorporation at the centrioles 2.3 Diffusion-limited droplet growth 2.4 Discussion 3 Isolated Active Droplets 3.1 Compositional fluxes in the stationary state 3.2 Critical droplet size: Instability of small droplets 3.3 Droplet nucleation facilitated by the active core 3.4 Interplay of critical droplet size and nucleation 3.5 Perturbations of the spherical droplet shape 3.5.1 Linear stability analysis of the spherical droplet shape 3.5.2 Active cores can center themselves in droplets 3.5.3 Surface tension stabilizes the spherical shape 3.5.4 First-order kinetics destabilize large droplets 3.6 Discussion 4 Multiple Interacting Active Droplets 4.1 Approximate description of multiple droplets 4.2 Linear stability analysis of the symmetric state 4.3 Late stage droplet dynamics and Ostwald ripening 4.4 Active droplets can suppress Ostwald ripening 4.4.1 Perturbation growth rate in the simple growth scenarios 4.4.2 Parameter dependence of the stability of multiple droplets 4.4.3 Stability of more than two droplets 4.5 Discussion 5 Active Droplets with Fluctuations 5.1 Stochastic version of the active droplet model 5.1.1 Comparison with the deterministic model 5.1.2 Ensemble statistics and ergodicity 5.1.3 Quantification of fluctuations by the standard deviation 5.2 Noise amplification by the autocatalytic reaction 5.3 Transient growth regime of multiple droplets 5.4 Influence of the system geometry on the droplet growth 5.5 Discussion 6 Comparison Between Theory and Experiment 6.1 Summary of the experimental observations 6.2 Estimation of key model parameters 6.3 Fits to experimental data 6.4 Dependence of centrosome size on cell volume and centrosome count 6.5 Nucleation and stability of centrosomes 6.6 Multiple centrosomes with unequal sizes 6.7 Disintegration phase of centrosomes 7 Summary and Outlook Appendix A Coexistence conditions in a ternary fluid B Instability of multiple equilibrium droplets C Numerical solution of the droplet growth D Diffusion-limited growth of a single droplet E Approximate efflux of droplet material F Determining stationary states of single droplets G Droplet size including surface tension effects H Distortions of the spherical droplet shape H.1 Harmonic distortions of a sphere H.2 Physical description of the perturbed droplet H.3 Volume fraction profiles in the perturbed droplet H.4 Perturbation growth rates I Multiple droplets with gradients inside droplets J Numerical stability analysis of multiple droplets K Numerical implementation of the stochastic model / Biologische Zellen bestehen aus vielen Unterstrukturen, die zusammen arbeiten um Leben zu ermöglichen. Die Größe dieser meist klar voneinander abgegrenzten Strukturen korreliert oft mit der Zellgröße. In der vorliegenden Arbeit werden als Beispiel für solche Strukturen Zentrosomen untersucht. Zentrosomen sind für viele Prozesse innerhalb der Zelle, insbesondere für die Zellteilung, unverzichtbar und sie besitzen keine Membran, welche ihnen eine feste Struktur verleihen könnte. Experimentelle Untersuchungen legen nahe, dass solche membranlose Strukturen als Flüssigkeitstropfen beschrieben werden können. In dieser Arbeit wird eine theoretische Beschreibung der Wachstumsphase von Zentrosomen hergeleitet, welche auf Phasenseparation beruht. Im Modell wird angenommen, dass das Zentrosomenmaterial in einer löslichen und einer phasenseparierenden Form existiert, wobei der Übergang zwischen diesen Formen durch chemische Reaktionen gesteuert wird. Die drei verschiedenen in dieser Arbeit untersuchten Reaktionen führen unter anderem zu Tropfengrößen und Nukleationseigenschaften, welche von den bekannten Ergebnissen im thermodynamischen Gleichgewicht abweichen. Insbesondere verursachen die chemischen Reaktionen ein thermisches Nichtgleichgewicht, in dem mehrere Tropfen stabil sein können und der destabilisierende Effekt der Oberflächenspannung unterdrückt wird. Konkret kann die Wachstumsdynamik der Zentrosomen nur durch eine selbstverstärkende Produktion der phasenseparierenden Form des Zentrosomenmaterials erklärt werden. Hierbei ist zusätzlich wichtig, dass die Zentriolen, die im Inneren jedes Zentrosoms vorhanden sind, ebenfalls diese Produktion katalysieren. Dadurch können die Zentriolen den Beginn des Zentrosomwachstums kontrollieren, mehrere Zentrosomen stabilisieren und sich selbst im Zentrosom zentrieren. Des Weiteren führt das selbstverstärkende Wachstum zu einer Verstärkung von Fluktuationen der Zentrosomgröße. Unsere Theorie erklärt die Wachstumsdynamik der Zentrosomen des Fadenwurms Caenorhabditis elegans für alle Embryonalzellen bis zum Achtzellstadium und deckt dabei auch Fälle mit anormaler Zentrosomenanzahl und veränderter Zellgröße ab. Das Modell kann auch Situationen mit unterschiedlich großen Zentrosomen erklären, welche auftreten, wenn die Struktur der Zentriolen verändert wird. Unser Beispiel beschreibt damit eine generelle Möglichkeit, wie membranlose Zellstrukturen organisiert sein können.:1 Introduction 1.1 Organization of the cell interior 1.2 Biology of centrosomes 1.2.1 The model organism Caenorhabditis elegans 1.2.2 Cellular functions of centrosomes 1.2.3 The centriole pair is the core structure of a centrosome 1.2.4 Pericentriolar material accumulates around the centrioles 1.3 Other membrane-less organelles and their organization 1.4 Phase separation as an organization principle 1.5 Equilibrium physics of liquid-liquid phase separation 1.5.1 Spinodal decomposition and droplet formation 1.5.2 Formation of a single droplet 1.5.3 Ostwald ripening destabilizes multiple droplets 1.6 Non-equilibrium phase separation caused by chemical reactions 1.7 Overview of this thesis 2 Physical Description of Centrosomes as Active Droplets 2.1 Physical description of centrosomes as liquid-like droplets 2.1.1 Pericentriolar material as a complex fluid 2.1.2 Reaction-diffusion kinetics of the components 2.1.3 Centrioles described as catalytic active cores 2.1.4 Droplet formation and growth kinetics 2.1.5 Complete set of the dynamical equations 2.2 Three simple growth scenarios 2.2.1 Scenario A: First-order kinetics 2.2.2 Scenario B: Autocatalytic growth 2.2.3 Scenario C: Incorporation at the centrioles 2.3 Diffusion-limited droplet growth 2.4 Discussion 3 Isolated Active Droplets 3.1 Compositional fluxes in the stationary state 3.2 Critical droplet size: Instability of small droplets 3.3 Droplet nucleation facilitated by the active core 3.4 Interplay of critical droplet size and nucleation 3.5 Perturbations of the spherical droplet shape 3.5.1 Linear stability analysis of the spherical droplet shape 3.5.2 Active cores can center themselves in droplets 3.5.3 Surface tension stabilizes the spherical shape 3.5.4 First-order kinetics destabilize large droplets 3.6 Discussion 4 Multiple Interacting Active Droplets 4.1 Approximate description of multiple droplets 4.2 Linear stability analysis of the symmetric state 4.3 Late stage droplet dynamics and Ostwald ripening 4.4 Active droplets can suppress Ostwald ripening 4.4.1 Perturbation growth rate in the simple growth scenarios 4.4.2 Parameter dependence of the stability of multiple droplets 4.4.3 Stability of more than two droplets 4.5 Discussion 5 Active Droplets with Fluctuations 5.1 Stochastic version of the active droplet model 5.1.1 Comparison with the deterministic model 5.1.2 Ensemble statistics and ergodicity 5.1.3 Quantification of fluctuations by the standard deviation 5.2 Noise amplification by the autocatalytic reaction 5.3 Transient growth regime of multiple droplets 5.4 Influence of the system geometry on the droplet growth 5.5 Discussion 6 Comparison Between Theory and Experiment 6.1 Summary of the experimental observations 6.2 Estimation of key model parameters 6.3 Fits to experimental data 6.4 Dependence of centrosome size on cell volume and centrosome count 6.5 Nucleation and stability of centrosomes 6.6 Multiple centrosomes with unequal sizes 6.7 Disintegration phase of centrosomes 7 Summary and Outlook Appendix A Coexistence conditions in a ternary fluid B Instability of multiple equilibrium droplets C Numerical solution of the droplet growth D Diffusion-limited growth of a single droplet E Approximate efflux of droplet material F Determining stationary states of single droplets G Droplet size including surface tension effects H Distortions of the spherical droplet shape H.1 Harmonic distortions of a sphere H.2 Physical description of the perturbed droplet H.3 Volume fraction profiles in the perturbed droplet H.4 Perturbation growth rates I Multiple droplets with gradients inside droplets J Numerical stability analysis of multiple droplets K Numerical implementation of the stochastic model

Strukturella batterier är multifunktionella; de tillhandahåller lagring av elektrokemisk energi samtidigt som de bidrar med en lastbärande funktion. Tillsammans möjliggör detta att batteriet kan integreras i karossen hos ett elektriskt fordon eller apparat. Denna multifunktionalitet möjliggör således en avsevärd reducering i fordonets vikt. Kompositmaterialet är förstärkt av kolfiberelektroder, innesluten i en elektrolytstruktur. För att förverkliga detta koncept måste batteriets elektrolyt kunna motstå mekanisk belastning, samtidigt som den transporterar joner mellan batteriets elektroder. Denna studie syftar till att bygga vidare på konceptet av fas-separerade polymerelektrolyter, skapade från polymerisationsinducerad fasseparation via termisk härdning, vilket är en teknik utvecklad av Schneider et al. och Ihrner et al. Vidare undersöks effekten av att dels använda en elektrolytlösning baserad på EC:PC, men även att inkorporera tioler till polymernätverket. Tvärbindningsmolekylerna som användes i denna studie inkluderade trimetylolpropan tris(3-merkaptopropionat) (3TMP), pentaerythritol tetrakis(3-merkaptopropionat) (4PER), och dipentaerythritol hexakis-(3-merkaptopropionat) (6DPER). Dessa skiljer sig i antal funktionella tiolgrupper. Konduktivitet, termo-mekanisk prestanda och strukturberoende egenskaper undersöktes genom tre laborativa faser. Den första fasen behandlade inverkan på elektrolytsystemet av ändrat lösningsmedel, tiol-funktionalitet samt tiolgruppförhållandet gentemot allyl gruppen på den primära monomeren. Sampolymeren innehållandes 6DPER uppvisade bäst multifunktionalitet, varpå denna utvecklades vidare i fas två där en optimal sammansättning fastställdes som bestod utav 45 viktprocent jonlösning. I den slutliga fasen konstruerades en halv-cell baserat på den tidigare optimerade elektrolytkompositionen; den uppmätta kapaciteten visar tydlig förbättring jämfört med tidigare forskning. Resultatet som erhölls i denna studie bidrar till förståendet av strukturella batteri-elektrolyter samt den forskning som en dag kan komma att förverkliga strukturella batterier och dess tillämpningskrav. / Structural batteries are multifunctional; providing electrochemical energy storage synergistically with a load-bearing function that enables their integration into the body panels of electric devices and vehicles. Thus, massless energy can be achieved. As a composite material, it is composed of reinforcing carbon fibre electrodes embedded in an electrolyte matrix. To realize this concept, the electrolyte must simultaneously transfer mechanical load and transport ions between electrodes. The following study builds on a phase-separated polymer electrolyte, created using polymerization-induced phase separation via thermal curing, formulated by Schneider et al. and Ihrner et al.. The impact of the incorporation of thiols for copolymerization and as cross-linking agents for the polymer network was researched along with use of an EC:PC-based solvent. The three thiols studied were: trimethylolpropane tris(3-mercaptopropionate) (3TMP), pentaerythritol tetrakis(3-mercaptopropionate) (4PER), and dipentaerythritol hexakis-(3-mercaptopropionate) (6DPER). These differed in regard to the amount of thiol functional groups present. Ionic conductivity, thermo-mechanical performance and structure-property relationships were studied across 3 laboratory phases. The first phase concerned the effect of thiol-functionality, the thiol functional group ratio relative to the allyl group present in the primary monomer, and the solvent interaction. 6DPER was concluded to be the most promising cross-linking agent. During the second phase, the effect of electrolyte content was evaluated with an optimum of 45 weight% determined. The third phase concluded the study, wherein a half-cell was assembled with the optimized electrolyte formulation showing improved capacity relative to previous studies. The results developed here contribute to the understanding of structural battery electrolyte systems and their continued research to meet application demands.

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Duplex stainless steels (DSSs), consisting of an equal amount of ferrite and austenite phases, have wide applications in e.g. vehicles, chemical engineering as well as nuclear plant  because  of  the  combination  of  excellent  mechanical properties  and  corrosion resistance.  However,  low  temperature  embrittlement has  existed  for  a  few  decades restricting the application of DSSs over about 250 ºC. When the service temperature ranges from around 250 to 500 °C, DSSs would become brittle because of the phase separation in the ferrite  phase. The phase separation is the  main reason  for the  low temperature embrittlement, and the kinetic of this phase separation achieves the fastest rate at about 475°C, so it is also termed as ‘475°C embrittlement’. Plenty of research has been performed in this field, but the problem remains. The mechanism of phase separation is due to the existence of a miscibility gap in the iron  chromium  binary  system,  and  previous  research  has  reported  some alloying elements can have the potency to delay the phase separation and the goal of my thesis is to investigate the influence of different alloying elements and select one which could be a plausible one to retard phase separation, and subsequently try to mitigate the low temperature embrittlement problem of DSSs. This  work  includes  the  literature survey  of  different  alloying  elements  which could influence   the   microstructure   and   mechanical   properties   of   DSSs   in general. Subsequently the thermodynamic calculation was performed to identify the effect of the  selected  alloying  elements  addition  on  phase  formation during  heat  treatment. Vanadium was selected to be a potentially suitable alloying element to be added into DSSs and experimental investigations were performed on the heat treatment process and the effect of V alloying. The main conclusions of the proposed thesis can be drawn as follow: The elemental addition  of Al,  Si, V,  Nb  and Ti  are  calculated  by Thermo-Calc,  they are  all  ferrite stabilisers and V addition seems most likely to be effective due its combination with the  interstitial  elements  C  and  N.  In  the  experimental  part, vanadium  additions combined with intermediate temperature solution treatment could be effective to retard the age hardening effect and the impact toughness test has a consistent tendency. Also, according to Thermo-Calc calculations and experimental results, the more interstitial elements that combine with V and precipitate from the ferrite phase the better was the performance of the duplex stainless steels. / Duplexa rostfria stål (DSS), bestående av lika stor mängd ferrit- och austenit, har bredtillämpning inom t.ex. fordon, kemiteknik samt kraftverk på grund av kombinationen av utmärkta mekaniska egenskaper och korrosionsbeständighet. Försprödning vid låg temperatur   begränsar emellertid tillämpningen   av   DSS   över   250   °C.   När driftstemperaturen varierar från cirka 250 till 500 ° C så kan DSS bli spröda på grund av   fasseparation   i   ferritfasen.   Fasseparationen   är   den    främsta   orsaken   till lågtemperaturförstöring, och kinetiken för denna fasseparation uppnår den snabbaste hastigheten  vid  cirka  475  °C,  så  den  kallas  också  '475  °C-försprödning'.  Mycket forskning har utförts inom detta område, men problemet kvarstår. Mekanismen för fasseparation beror på förekomsten av ett blandningslucka i det binära järn-krom-systemet, och tidigare forskning har rapporterat att vissa legeringselement kan  ha  förmågan  att  fördröja  fasseparationen.  Målet med mitt  examensarbete  är  att undersöka påverkan av olika legeringselement och välja ett som kan användas för att fördröja fasseparationen och därav mildra problemet med lågtemperaturförsprödning hos DSS. Detta  arbete  inkluderar  litteraturundersökning  av  olika  legeringselement som  kan påverka  mikrostrukturen  och  mekaniska  egenskaper  hos  DSS  i allmänhet.  Därefter termodynamiska beräkningar för att identifiera effekten av de valda legeringselementen på fasjämvikt under värmebehandlingen. Vanadin valdes som ett potentiellt lämpligt legeringselement som kan tillsättas i DSS. Experimentella undersökningar utfördes på värmebehandlingsprocessen och effekten av V-legering. De huvudsakliga slutsatserna av examensarbetetär: tillsatsen av Al, Si, V, Nb och Ti beräknades av Thermo-Calc, de är alla ferritstabiliserande och V-tillsats verkar kunna vara effektiv på grund av dess kombination med de interstitiella elementen C och N. I den    experimentella    delen    studerades vanadintillsatser    i    kombination    med värmebehandling för att fördröja den hårdnandet och försprödningen. Enligt Thermo- Calc-beräkningar  och experimentella  resultat  så  kan  prestanda  förbättras  desto  merinterstitiella element som kombineras med V.

The results described in this dissertation focus on the synthesis and utilization of several disulfonated poly(arylene ether) random copolymer membranes in fuel cell and reverse osmosis applications. Poly(arylene ether)s were prepared by direct step copolymerization using a third monomer 3,3–-disulfonated 4,4–-dichlorodiphenylsulfone. The membrane properties of a 4,4–-biphenol-based disulfonated poly (arylene ether sulfone) random copolymer (BPS-35), optionally blended with various fluorine containing polymers or unsulfonated biphenol-based poly (arylene ether sulfone)s (Radel R) were investigated for fuel cell applications. Fluorine containing copolymers used included with 2,2–-hexafluoroisopropylidene 4,4–-biphenol based unsulfonated (6F-00) or disulfonated (6FS-35 and 6FS-60) PAES, hexafluoroisopropylidene biphenol based 4,4–-difluoro phenyl phosphine oxide) (6FPPO), and poly(vinylidene fluoride) (Kynar®). Tapping mode atomic force microscopy (TM-AFM) images of the membranes with 10 wt% of fluorinated copolymers showed macroscopic phase separation. Good miscibility between the copolymers at low concentrations was also confirmed by the observation of only one glass transition temperature. Compared to the benchmark Nafion 1135, the 10wt% blends of the fluorinated copolymers afforded a considerable reduction in the methanol permeabilities, which is important for direct methanol fuel cells (DMFC). The best DMFC performance with 0.5 M methanol fuel was illustrated with blends containing 10 wt% 6FS-00. At higher methanol concentrations (up to 2.0 M) BPS-35/6FS-00 (90/10) membranes outperformed both Nafion membranes. Blends of BPS-35 blends with 6FS-35 or Radel R were also used as RO membranes. The highest salt rejections of 97.2 and 98.0% were obtained from BPS35/Radel R (90:10) and BPS-35/6FS-35 (95:5) blends, respectively in the salt form. A systematic study of the preparation of BPS-20 random copolymer skin-core asymmetric membranes by diffusion induced phase separation (DIPS) from various polar aprotic solvent or cosolvent systems is reported. The best aprotic solvents to generate an asymmetric structure were NMP and DMAc whereas tetrahydrofuran (THF)/ formamide (FAm) (80/20 v/v) mixtures proved to be the best co-solvent systems. Acetone was the best non-solvent to prepare asymmetric membranes from both aprotic solvents and co-solvent mixtures. Overall, asymmetric membranes prepared from THF/FAm co-solvent mixtures illustrated the most stable phase separated morphology that was free of macrovoids. However, thicker skins (~5 μM) were formed due to the high volatility of THF. Therefore, ultra-thin skin thin film composites (TFC) based on BPS-20 in diethylene glycol (Di(EG) were prepared. Thermal treatment of these TFC was conducted at 90 °C and the addition of 20 wt% glycerin to the casting formulation helped to prevent pore collapse in the porous Udel polysulfone. A minimum of three coats was required to obtain a dense, smooth, and pinhole free skin layer. The generation of three dimensional (ternary) solubility parameter phase diagrams based on experimental data was formulated and a region of solubility based on the solubility parameters of the aprotic solvents and the different co-solvent systems was established for BPS-20. / Ph. D.

Les trois proto-oncogènes RAS, soit HRAS, KRAS et NRAS (H/K/NRAS), sont les gènes les plus fréquemment mutés dans les cancers humains. Les énormes défis liés au ciblage thérapeutique des RAS soulignent la nécessité d’approfondir notre compréhension de la biologie de ces protéines et de trouver des stratégies alternatives pour traiter les cancers qu’elles induisent. Les petites GTPases RAS sont des régulateurs fondamentaux du développement et se lient à des protéines effectrices distinctes pour transmettre des signaux afin de réguler diverses voies de signalisation intracellulaires. Les effecteurs de RAS sont définis par un domaine de liaison à RAS (RBD) qui reconnaît la conformation active de RAS liée au GTP et active les voies de signalisation en aval. Par exemple, les effecteurs RAF et PI3K régulent les voies de signalisation MAPK et PI3K-AKT, respectivement, pour contrôler la prolifération, la survie et la tumorigenése. Alors que RASSF5 dirige RAS vers la voie Hippo, suppresseur de tumeur, mais cela reste moins bien compris. Il est intéressant de noter que la famille des domaines d'association à RAS (RASSF) comprend 10 effecteurs RAS supposés en aval, chacun comprenant un RBD, mais seul le RASSF5 se lie à H/K/NRAS. Les RASSF sont des suppresseurs de tumeurs connus et comptent parmi les protéines les plus fréquemment régulées à la baisse dans les cancers. La superfamille des petites GTPases RAS compte chez l’humain environ 160 protéines regroupées en cinq sous-familles : RAS, RHO, RAN, RAB et ARF. Alors que H/K/NRAS sont les mieux caractérisées et ont été au centre de la recherche sur le cancer, les fonctions cellulaires, la régulation et les protéines effectrices de nombreuses autres GTPases de la superfamille RAS restent obscures. Ma recherche doctorale visait donc à étudier le rôle des effecteurs de RASSF en cartographiant les interactions de BRAF et de quatre protéines de RASSF avec 83 GTPases appartenant aux sous-familles RAS, RHO et ARF et à utiliser ces connaissances pour démêler l'interaction complexe entre les GTPases et les effecteurs. Nous avons abordé des questions clés sur la spécificité des RBD envers les GTPases et avons révélé et validé 39 interactions RASSF-GTPase. Nous avons constaté qu'alors que BRAF démontre une spécificité restreinte pour les H/K/NRAS classiques, RASSF fait preuve de plasticité dans ses interactions avec les GTPases. RASSF5 interagit avec 10 GTPases distinctes de la sous-famille RAS (H/K/NRAS, RAP2B/2C, RRAS1/2, MRAS et RIT1/2) qui favorisent la croissance. La présence d’un complexe RASSF5-GTPase à la membrane plasmique redistribue la protéine YAP dans le cytosol et active la signalisation Hippo. Nous avons également montré que l'interaction de RASSF5 avec les kinases MST est essentielle pour l'activation de la voie Hippo médiée par le complexe RASSF5-GTPase. Nous avons également révélé que RASSF3, RASSF4 et RASSF8 lient les GTPases de la sous-famille RAS inhibitrices de croissance. RASSF8 subit une séparation de type liquide-liquide et réside avec YAP dans des gouttelettes non-membranaires. De plus, l'expression des partenaires GTPase de RASSF8 redistribue les condensats de RASSF8 et YAP de grandes structures périnucléaires. YAP et la voie Hippo entraînent une résistance aux inhibiteurs de RAS dans les cancers induits par RAS. Ainsi, nos découvertes sur l'association de RASSF5 et RASSF8 avec la voie Hippo pourraient aider à élucider les liens manquants entre les signalisations RAS et Hippo. Nous avons également identifié RASSF3 comme le premier effecteur canonique de MIRO1/2, des GTPases mitochondriales essentielles pour le fonctionnement et l'homéostasie des mitochondries. L'interaction de RASSF3 avec MIRO dans les mitochondries entraîne un effondrement du réseau mitochondrial. Pour comprendre la dynamique du réseau des GTPases, nous développons un outil de GTPase piégée inductible par la rapamycine. Ainsi, le piège qui garde la GTPase surexprimée inactive peut être libérée et la GTPase activée de manière conditionnelle en utilisant le traitement à la rapamycine. Cet outil sera utile pour élucider le rôle précis de chaque GTPase dans la régulation des effecteurs en aval in cellulo. Par conséquent, cette étude révèle la nature complexe des interactions entre GTPases et effecteurs et met en lumière l'importance biologique des protéines RASSF. / The three RAS proto-oncogenes, namely HRAS, KRAS and NRAS (H/K/NRAS) are the most frequently mutated genes in human cancers. H/K/NRAS small GTPases are fundamental regulators of development and bind distinct effector proteins to transmit signals to diverse cellular pathways. RAS effectors are defined by a RAS-binding domain (RBD) which recognizes the GTP-bound activated conformation of RAS and activates downstream signalling pathways. For example, RAF and PI3K effectors regulate the MAPK and PI3K-AKT signalling pathways, respectively, to control proliferation, survival and tumorigenesis. Whereas RASSF5 directs RAS to the tumour suppressor Hippo pathway but this remains less understood. Interestingly, the RAS Association domain family (RASSF) comprises 10 purported downstream RAS effectors, each of which comprises an RBD, but only RASSF5 binds to H/K/NRAS. RASSF are known tumour suppressors and are among the most frequently downregulated proteins in cancers. There are approximately 160 proteins in the human RAS superfamily that are clustered into five subfamilies: RAS, RHO, RAN, RAB and ARF. While H/K/NRAS are the best-characterized and have been a principal focus of cancer research, cellular functions, regulation and effectors for many other GTPases of the RAS superfamily remain recondite. My doctoral research therefore aimed to investigate the role of RASSF effectors by mapping the interactions of BRAF and four RASSF proteins with 83 GTPases belonging to the RAS, RHO and ARF subfamilies and use this knowledge to unravel the complex interplay between GTPase and effectors. I uncovered 39 RASSF–GTPase interactions and addressed key questions on RBD specificity towards GTPases. I found that while BRAF demonstrates restricted specificity for classical H/K/NRAS, RASSF shows plasticity in its interaction with GTPases. RASSF5 interacts with 10 distinct growth-promoting GTPases of the RAS subfamily (H/K/NRAS, RAP2B/2C, RRAS1/2, MRAS and RIT1/2). RASSF5–GTPase complex at the plasma membrane redistributes YAP to the cytosol and activates Hippo signalling. I also showed that RASSF5 interaction with MST hippo kinases is essential for RASSF5–GTPase complex-mediated activation of the Hippo pathway. I further revealed that RASSF3, RASSF4 and RASSF8 bind distinct growth-inhibiting RAS subfamily GTPases. RASSF8 undergoes liquid-liquid phase separation and resides in membraneless, phase-separated YAP condensates. Further, the expression of GTPase partners of RASSF8 redistributes RASSF8 and YAP condensates to large peri-nuclear structures. These findings show several GTPase–RASSF complexes play a role in Hippo signalling which may serve as potential therapeutic targets for RAS- or YAP-driven cancers. I also identified RASSF3 as the first canonical effector of MIRO1/2, mitochondrial GTPases that are essential for mitochondrial functions and homeostasis. RASSF3 interaction with MIRO at the mitochondria results in a collapse of the mitochondrial network. To understand the dynamics of the GTPase network, I am further developing a rapamycin-inducible trapped GTPase (RITG) tool, wherein a GTPase can be overexpressed while remaining occluded, and can be conditionally released or activated. This tool can be useful in elucidating the role of GTPases in the regulation of downstream effectors in cellulo. Overall, this study reveals the complex nature of GTPase–effector interactions and uncovers the biological significance of RASSF proteins.

Thin films of a ternary alloys between aluminum, manganese and copper (AlMnCu), prepared at low temperature, are reported in the present work. It is a study along two binary edges (Al100−xMnx and Al100−xCux (from literature)), the first almost along the entire range of concentrations, and two different cuts through the ternary system. The first cut begins at amorphous Al50Mn50 and adds Cu step by step (from literature). The second cut begins at amorphous Al60Cu40 and varies Al and Mn such that the Cu-content stays constant. There is a wide amorphous range, purely amorphous or with additional quasi-crystalline local features, and there are ranges where mixtures between amorphous and nano- or partially crystalline phases with a high content of lattice defects exist. The work exclusively deals with the development of the static structure and its thermal stability, as well as the development of its electronic transport properties. The ternary AlMnCu is a model for a deeper understanding of different scenarios of structure stabilization and their interaction, with consequences on the emergence of physical properties. The analysis focuses on self-organizing spherical-periodic, global resonance effects between two global subsystems of the alloy under consideration, the Fermi gas as one and the forming static structure of ions as the other. The global resonances are self organizing by i.e. an exchange of characteristic momenta and energy between the subsystems and trigger, besides a particular structure, particle-density anomalies and/or hybridization effects. The work shows strong evidence of a combined action of the particle-density anomalies with the effective valence of the atoms involved, in order to maintain the resonance condition under all circumstances. Whereas at high Al-content, additionally, local features of quasi-crystallinity arise, closer to pure Mn phase separations arise, causing mixtures of amorphous with nano-crystalline phases or crystals with a high content of lattice distortions. Reports on density anomalies, hybridization effects, and angular correlations, have been published quite often. In the present work, besides similar effects in a ternary system, first indications for phase separations and lattice defects as additional scenarios of stabilizing condensed matter are reported. The resonance, seen as spherical-periodic-order at short- and medium-range distances in real space, causes in reciprocal space a resonance maximum (analogous to a Bragg peak in crystals). Its location on the axis of the scattering vector is defined by the electron system and a pseudo-gap in the electronic density of states arise at the Fermi energy. The origin of the structural order and its thermal stability, the pseudo-gap at the Fermi energy, as well as the transport properties with its anomalies, all are attributed to the resonance. The spherically-periodic atomic order in an amorphous phase is analogous to the planar order in a crystal. The interatomic distances between the nearest neighboring shells at short- and medium range distances coincide with half the Fermi wavelength, also called Friedel-wavelength. / In der vorliegenden Arbeit wird über bei niedriger Temperatur hergestellte dünne Schichten aus einem ternären Legierungssystem zwischen Aluminium, Mangan und Kupfer (AlMnCu) berichtet, über zwei binäre Randlegierungen (Al100−xMnx und Al100−xCux (aus der Literatur)) und über zwei verschiedene Schnitte durch den ternären Bereich. Ein Schnitt durch den ternären Bereich beginnt bei amorphem Al50Mn50 und fügt schrittweise Cu zur Legierung (aus der Literatur). Der zweite Schnitt beginnt bei amorphem Al60Cu40 und fügt schrittweise Al und Mn so zu, dass der Cu-Gehalt konstant bleibt. Es gibt amorphe Bereiche, teilweise mit weiteren lokal quasi-kristallinen zusätzlichen Merkmalen, sowie Bereiche, in denen Mischungen aus amorphen mit nano oder teilkristallinen Phasen auftreten. Die Arbeit behandelt die Entwicklung der statischen Struktur und deren thermische Stabilität, sowie die Entwicklung elektronischer Transporteigenschaften. Das ternäre AlMnCu ist ein Modellsystem für ein tieferes Verständnis der verschiedenen Szenarien struktureller Stabilisierung und deren Interaktion, mit Auswirkungen auf ein tieferes Verständnis der mit der Struktur sich entwicklenden physikalischen Eigenschaften. Die Analyse konzentriert sich auf sich selbstorganisierende sphärisch-periodische, globale Resonanzeffekte zwischen zwei globalen Untersystemen des gewählten Materialsystems, der Fermi-Kugel als einem und der sich bildenden statischen Struktur der Ionen als dem anderen. Die globalen Resonanzen bilden sich u.a. durch einen Austausch von charakteristischen Impulsen und Energie zwischen den Untersystemen, die neben einer bestimmten Struktur zunächst auch Teilchendichteanomalien und/oder Hybridisierungseffekte erzeugen. Die vorliegende Arbeit zeigt dabei starke Anzeichen für eine kombinierte Wirkung dieser Effekte um die Resonanzbedingung unter allen Umständen beizubehalten. Bei hohen Al-Anteilen treten zusätzlich lokale Merkmale von quasi-Kristallinität, mit 5-facher Winkelkorrelation auf, um auch diesen Bereich strukturell zu stabilisieren. Bei hohen Mn-Anteilen sind es lokale Phasentrennung in amorphe und nano-kristalline Phasen oder hohe Anteile von Gitterdeffekten, die zusätzlich auftreten. Über Dichteanomalien, Hybridisierungseffekte und Winkelkorrelationen wurde in der Vergangenheit bereits mehrfach berichtet. In der vorliegenden Arbeit sind es, neben der modellhaften Behandlung dieser im ternären System, die Hinweise zu Phasentrennung und Gitterdeffekten als zusätzliche Szenarien zur Stabilisierung kondensierter Materie, über die erstmalig berichtet wird. Die auf dem Austausch von Impuls beruhende Resonanz, als sphärisch-periodische-Ordnung im nahen und mittleren Abstandsbereich des Ortsraumes zu sehen, verursacht im reziproken Raum ein Resonanzmaximum (analog zu einem Bragg-peak in kristallinen Systemen), dessen Lage auf der Achse der Streuvektoren vom Elektronensystem definiert wird, und eine Pseudolücke in der elektronischen Zustandsdichte der Elektronen an der Fermi-Energie. Letztendlich werden die Entstehung der strukturellen Ordnung selbst, ihre thermische Stabilität, als auch die Transporteigenschaften mit ihren Anomalien auf diese Pseudolücke und demzufolge auf die Resonanz zurückgeführt. Die sphärisch-periodische Ordnung der Atome in einer amorphen Phase ist analog zur planaren Ordnung in einem Kristall. Die Atomabstände zwischen den Nächstnachbarschalen im mittleren, aber auch nahen Abstandsbereich, stimmen über große Distanzen mit der halben Fermi-Wellenlänge überein, die man auch als Friedel-Wellenlänge bezeichnet.

La réaction de macrocyclisation est une transformation fondamentale en chimie organique de synthèse. Le principal défi associcé à la formation de macrocycles est la compétition inhérente avec la réaction d’oligomérisation qui mène à la formation de sousproduits indésirables. De plus, l’utilisation de conditions de dilutions élevées qui sont nécessaires afin d’obtenir une cyclisation “sélective”, sont souvent décourageantes pour les applications à l’échelle industrielle. Malgré cet intérêt pour les macrocycles, la recherche visant à développer des stratégies environnementalement bénignes, qui permettent d’utiliser des concentrations normales pour leur synthèse, sont encore rares. Cette thèse décrit le développement d’une nouvelle approche générale visant à améliorer l’efficacité des réactions de macrocyclisation en utilisant le contrôle des effets de dilution. Une stratégie de “séparation de phase” qui permet de réaliser des réactions à des concentrations plus élevées a été developpée. Elle se base sur un mélange de solvant aggrégé contrôlé par les propriétés du poly(éthylène glycol) (PEG). Des études de tension de surface, spectroscopie UV et tagging chimique ont été réalisées afin d’élucider le mécanisme de “séparation de phase”. Il est proposé que celui-ci fonctionne par diffusion lente du substrat organique vers la phase ou le catalyseur est actif. La nature du polymère co-solvant joue donc un rôle crutial dans le contrôle de l’aggrégation et de la catalyse La stratégie de “séparation de phase” a initiallement été étudiée en utilisant le couplage oxidatif d’alcynes de type Glaser-Hay co-catalysé par un complexe de cuivre et de nickel puis a été transposée à la chimie en flux continu. Elle fut ensuite appliquée à la cycloaddition d’alcynes et d’azotures catalysée par un complexe de cuivre en “batch” ainsi qu’en flux continu. / Macrocyclization is a fundamentally important transformation in organic synthetic chemistry. The main challenge associated with the synthesis of large ring compounds is the competing oligomerization processes that lead to unwanted side-products. Moreover, the high dilution conditions needed to achieved “selective” cyclization are often daunting for industrial applications. Despite the level of interest in macrocycles, research aimed at developing sustainable strategies that focus on catalysis at high concentrations in macrocyclization are still rare. The following thesis describes the development of a novel approach aimed at improving the efficiency of macrocyclization reactions through the control of dilution effects. A “phase separation” strategy that allows for macrocyclization to be conducted at higher concentrations was developped. It relies on an aggregated solvent mixture controlled by a poly(ethylene glycol) (PEG) co-solvent. Insight into the mechanism of “phase separation” was probed using surface tension measurments, UV spectroscopy and chemical tagging. It was proposed to function by allowing slow diffusion of an organic substrate to the phase where the catalyst is active. Consequently, the nature of the polymer co-solvent plays a role in controlling both aggregation and catalysis. The “phase separation” strategy was initially developed using the copper and nickel co-catalyzed Glaser-Hay oxidative coupling of terminal alkynes in batch and was also transposed to continuous flow conditions. The “phase separation” strategy was then applied to the copper-catalyzed alkyne-azide cycloaddition in both batch and continuous flow.

Cette thèse est consacrée à l’étude théorique et numérique de plusieurs équations aux dérivées partielles non linéaires qui apparaissent dans la modélisation de la séparation de phase et des micro-systèmes électro-mécaniques (MSEM). Dans la première partie, nous étudions des modèles d’ordre élevé en séparation de phase pour lesquels nous obtenons le caractère bien posé et la dissipativité, ainsi que l’existence de l’attracteur global et, dans certains cas, des simulations numériques. De manière plus précise, nous considérons dans cette première partie des modèles de type Allen-Cahn et Cahn-Hilliard d’ordre élevé avec un potentiel régulier et des modèles de type Allen-Cahn d’ordre élevé avec un potentiel logarithmique. En outre, nous étudions des modèles anisotropes d’ordre élevé et des généralisations d’ordre élevé de l’équation de Cahn-Hilliard avec des applications en biologie, traitement d’images, etc. Nous étudions également la relaxation hyperbolique d’équations de Cahn-Hilliard anisotropes d’ordre élevé. Dans la seconde partie, nous proposons des schémas semi-discrets semi-implicites et implicites et totalement discrétisés afin de résoudre l’équation aux dérivées partielles non linéaire décrivant à la fois les effets élastiques et électrostatiques de condensateurs MSEM. Nous faisons une analyse théorique de ces schémas et de la convergence sous certaines conditions. De plus, plusieurs simulations numériques illustrent et appuient les résultats théoriques. / This thesis is devoted to the theoretical and numerical study of several nonlinear partial differential equations, which occur in the mathematical modeling of phase separation and micro-electromechanical system (MEMS). In the first part, we study higher-order phase separation models for which we obtain well-posedness and dissipativity results, together with the existence of global attractors and, in certain cases, numerical simulations. More precisely, we consider in this first part higher-order Allen-Cahn and Cahn-Hilliard equations with a regular potential and higher-order Allen-Cahn equation with a logarithmic potential. Moreover, we study higher-order anisotropic models and higher-order generalized Cahn-Hilliard equations, which have applications in biology, image processing, etc. We also consider the hyperbolic relaxation of higher-order anisotropic Cahn-Hilliard equations. In the second part, we develop semi-implicit and implicit semi-discrete, as well as fully discrete, schemes for solving the nonlinear partial differential equation, which describes both the elastic and electrostatic effects in an idealized MEMS capacitor. We analyze theoretically the stability of these schemes and the convergence under certain assumptions. Furthermore, several numerical simulations illustrate and support the theoretical results.