Call number: LD2668 .T4 1985 G677 / Master of Science

Thesis (MSc)--Stellenbosch University, 2012. / ENGLISH ABSTRACT: In order to test the effect of different plant growth-promoting strategies on Triticum aestivum L. (wheat), we investigated the ability of biochar and a grain-associated soil yeast, to improve the growth of this crop. Our first goal was to study the effect of biochar amendments to sandy soil on the growth and nutrition of wheat in the presence of mycorrhizal fungi. This was accomplished by amending soil with 0%, 1%, 2.5%, 5% and 10% (w/w) biochar and cultivating wheat plants in these soil-biochar mixtures. After harvesting, plant growth and mycorrhizal colonization of roots were measured. In addition, we studied the nutritional physiology of these plants with regards to nitrogen (N), phosphorous (P) and potassium (K) concentrations, as well as the growth efficiencies and uptake rates of these nutrients. We found that wheat growth was improved by biochar amendments to soil, probably as a result of elevated K levels in the plant tissues supplied by the biochar amendments. The second goal of this study was to obtain a soil yeast from the rhizosphere of another monocot in the family Poaceae, i.e. Themeda triandra Forssk. (red grass), and then evaluate this isolate for its ability to improve wheat performance. Three different Cryptococcus species were isolated from the rhizosphere of wild grass, i.e. Cryptococcus zeae, Cryptococcus luteolus and Cryptococcus rajasthanensis. Since C. zeae was previously isolated from maize, an isolate representing this species was selected to be used in further experimentation. With the ultimate goal of testing the ability of this yeast to improve wheat growth, its effect on wheat germination was investigated and compared to that of two other soil yeasts, i.e. Cryptococcus podzolicus CAB 978 and Rhodotorula mucilaginosa CAB 826. These three yeasts were subsequently tested for their ability to improve wheat growth in pot cultures in a greenhouse. After one and two months of growth, the culturable yeasts present in the rhizosphere and bulk soil were enumerated. The effects of these yeasts were elucidated by measuring wheat growth in terms of dry weight, as well as root and shoot relative growth rates (RGR). Changes in wheat nutrition were evaluated by determining the concentrations, growth efficiencies and uptake rates for P, K, zinc (Zn) and iron (Fe). During this study, it was found that only C. zeae CAB 1119 and C. podzolicus CAB 978 were able to enhance seed germination. Similarly, it was shown that C. zeae CAB 1119 was able to improve wheat growth during the first and second month of cultivation, whereas C. podzolicus CAB 978 only improved growth during the first month, and R. mucilaginosa CAB 826 had no effect on growth. This improved growth could be attributed to C. zeae CAB 1119 improving the P, K, Zn and Fe growth efficiency of wheat, which positively influenced the root and shoot RGR, and subsequently wheat growth. Our final goal was to test whether C. zeae CAB 1119 could affect wheat growth and nutrition when cultivated in sandy soil, which contained natural microbial consortia and 10% (w/w) biochar. Plants treated with viable or autoclaved cells of C. zeae CAB 1119, were subsequently cultivated in soil only or soil amended with biochar. After one month, plants were harvested and growth was measured with regards to dry weight, root RGR and shoot RGR. In addition, the concentrations of P, K, Zn and Fe were analyzed for these plants, where after the growth efficiencies and uptake rates were calculated for these four nutrients. Results indicated that plants growing in soil amended with biochar, and treated with viable C. zeae CAB 1119, showed the best growth. The increased root and shoot RGR witnessed in these plants was probably due to increased concentrations of P and K in the plants. This study opens new avenues of research with regards to the bio-fertilizers of wheat. / AFRIKAANSE OPSOMMING: Die uiteindelike doel van die studie was om die effek van verskillende plantgroei bevorderende metodes op die groei van Triticum aestivum L. (koring) te ondersoek. Dus het ons die vermoë van houtskool en ‘n graan-geassosieerde grondgis getoets om die groei van dié plant te bevorder. Die eerste doel van die studie was om die effek van houtskool toedienings tot sanderige grond te evalueer. Dit is bewerkstellig deur 0%, 1%, 2.5%, 5% en 10% (w/w) van die houtskool by die sand toe te voeg en koring in die houtskool-sand mengsels te kweek. Na die verlangde groei tydperk is die koring geoes en die mikorrizale kolonisasie op en in die koring wortels bepaal. Gedurende hierdie studie is die effek van bogenoemde toedienings op die fisiologie van die plante ondersoek deur die konsentrasies, opname tempo’s, en groei ekonomie van die plante vir stikstof (N), fosfaat (P) en kalium (K) te bepaal. Ons het gevind dat die groei van koring deur die toediening van houtskool bevorder is en dit blyk dat dié effek weens die teenwoordigheid van hoë K vlakke in die plantweefsel is. Die tweede doel van ons studie was om ‘n gis vanuit die risosfeer van ‘n monokotiel wat aan die familie Poacea behoort, naamlik Themeda triandra Forssk. (rooigras) te isoleer. Die vermoë van die isolaat om die groei van koring te bevorder was daarna getoets. Drie verskillende Cryptococcus spesies was vanuit die risosfeer van rooigras geïsoleer, nl. Cryptococcus zeae, Cryptococcus luteolus en Cryptococcus rajasthanensis. Omdat C. zeae in ‘n vorige studie vanaf mielies geisoleer was, is ‘n isolaat van hierdie spesie gebruik in verdere eksperimente. Met die doel om te bepaal of dié gisspesie koringgroei kan bevorder, was die effek van C. zeae op die ontkieming van koring bestudeer en vergelyk met dié van twee ander grond giste, nl. Cryptococcus podzolicus CAB 978 en Rhodotorula mucilaginosa CAB 826. Hierdie drie giste is ook ondersoek om die groei van koring in ‘n glashuis te bevorder. Na een en twee maande se groei was die getalle van giste teenwoordig in die risosfeer en grond verder weg van die wortels bepaal. Die effek van dié giste op die groei van koring is bepaal in terme van droë gewig asook die relatiewe wortel en halm groei tempos. Veranderinge in die nutrient status van koring is ondersoek deur die konsentrasies, groei-ekonomie en tempo van opname vir P, K, sink (Zn) en yster (Fe) te bepaal. Ons het gedurende dié studie gevind dat C. zeae CAB 1119 en C. podzolicus CAB 978 die ontkieming van koring kon verbeter. Ons het ook gevind dat C. zeae CAB 1119 die groei van koring gedurende die eerste en tweede maand van groei kon bevorder, terwyl C. podzolicus CAB 978 dit net gedurende die eerste maand kon vermag en R. mucilaginosa CAB 826 geen effek gehad het nie. Die verbeterde groei kon aan C. zeae CAB 1119, wat die P, K, Zn en Fe groei effektiwiteit van die plante verbeter het, toegeskryf word. Die verbetering van groei effektiwiteit het ‘n positiewe invloed op die relatiewe groeisnelheid van die wortels en halms gehad, en dus op koringgroei. Die laaste doel van die studie was om te bepaal of C. zeae CAB 1119 die groei van koring kon bevorder wanneer die koring in sand wat natuurlike mikrobiese populasies bevat en met houtskool aangevul is, gekweek word. Plante is met lewensvatbare of nielewensvatbare selle van C. zeae CAB 1119 behandel en gekweek in sanderige grond, en/of grond waarby 10% (w/w) houtskool toegevoeg is. Die plante is na een maand geoes en die groei bepaal in terme van droë massa en die relatiewe wortel en halm groei tempos. Die konsentrasies van P, K, Zn en Fe in die plante, asook die fisiologie van die plante, nl. groei ekonomie en tempo van opname, met betrekking tot P, K, Zn en Fe is bepaal, Ons het gevind dat plante wat in die houtskool-grond mengsel gekweek is en met lewensvatbare selle van C. zeae CAB 1119 behandel is die beste groei getoon het. Die verbeterde relatiewe groei tempos van die wortels en halms was mees waarskynlik die gevolg van verhoogde P en K konsentrasies in die plante. Hierdie studie toon nuwe resultate in verband met die gebruik van biologiese alternatiewes tot kunsmis.

Thesis (MScAgric)--Stellenbosch University, 2014. / ENGLISH ABSTRACT: In South Africa, canola (Brassica napus L.) is produced under short day conditions during winter months. These conditions, together with high fertiliser application levels required to maximize grain yields, often result in tall growing bulky crops which are prone to lodging. This will especially be true if canola production is expanded to irrigated areas. Plant growth regulators (PGRs) have successfully been used to reduce canola plant height and lodging under experimental conditions in Australia and are worldwide commercially used to reduce plant height and lodging in winter cereals such as wheat and barley. The primary objective of this study was to determine the effect of anti-lodging PGRs on the agronomic and quality characteristics of commercial canola cultivars under South African conditions. This study was conducted under field conditions at three research farms, as well as controlled glasshouse conditions at Welgevallen Research Farm, situated in the Western Cape Province of South Africa. Foliar treatments consisted of a control (untreated) and four PGRs; CeCeCe® 750 (chlormequat chloride), Moddus® 250 EC (trinexapac-ethyl), Primo MAXX® (trinexapac-ethyl), and Kelpak®, applied either individually or in combination with wetting agent at budding stage (growth stage 3.1) of canola. Whilst glasshouse trials were conducted with spring canola cultivars “Hyola 555TT” and “43C80”, field trials were done with Hyola 555TT only. Monitoring and measuring various plant parameters during different growth stages of canola, the morphological and physiological impact of PGR-treatments on growth and development were determined. Though Primo MAXX® tends to reduce plant height in all trials; reductions were only significant during one of the glasshouse trials. Fortunately, compared to the control, none of the PGRs significantly reduced the leaf area, number of flowers or number of pods plant-1 during this study, while Primo MAXX® and Moddus® 250 EC tend to increase the grain yield under field conditions. This study indicates that PGRs can possibly be used to improve lodging resistance and yield of canola. Identifying the most effective PGRs on specific cultivars, the results of the study will contribute to the knowledge of using PGRs in canola to reduce lodging and improve grain yields in South Africa. / AFRIKAANSE OPSOMMING: In Suid-Afrika word canola (Brassica napus L) gedurende die wintermaande onder kort-dagtoestande verbou. Hierdie verbouingstoestande, tesame met verhoogde toediening van bemesting vir maksimum opbrengs, lei dikwels tot welige, hooggroeiende plantegroei, wat „n geneigdheid toon om om te val (lodge). Hierdie probleem vererger indien canola onder besproeiingstoestande gekweek sou word. Plantgroeireguleerders (PGRs) is reeds met sukses onder eksperimentele toestande in Australië gebruik om die planthoogte en dus omval (lodging) van canola te beperk. Plantgroeireguleerders word reeds kommersieel gebruik om planthoogte en omval van wintergraangewasse, soos koring en gars te verminder. Die hoofdoel van hierdie studie was om die effek van omval-teenwerkende PGRs op die agronomiese en kwaliteitseienskappe van kommersiële canola-kultivars onder Suid-Afrikaanse groeitoestande te bepaal. Hierdie studie is uitgevoer d.m.v. veldproewe op drie navorsingsplase, sowel as gekontrolleerde glashuisproewe te Welgevallen Navorsingsplaas, geleë in die Wes-Kaapprovinsie van Suid-Afrika. Blaartoedienings het bestaan uit „n kontrole (onbehandeld) en vier PGRs: CeCeCe® 750 (chlormequat chloride), Moddus® 250 EC (trinexapac-ethyl), Primo MAXX® (trinexapac-ethyl) en Kelpak®, wat afsonderlik of in kombinasie met benattingsmiddels toegedien is tydens die blomknopverskyningstadium (groeistadium 3.1) van canola. Die glashuisproewe is uitgevoer met lente-canolakultivars, nl. “Hyola 555TT” en “43C80”, terwyl veldproewe slegs uitgevoer is met Hyola 555TT. Verskeie plantparameters is gemonitor en gemeet gedurende die verskillende groeistadia van canola, waartydens en die morfologiese en fisiologiese impak van PGR-toedienings op die groei- en ontwikkeling van canola bepaal is. Alhoewel Primo MAXX® neig om die planthoogte in al die proewe te verkort, het dit planthoogte slegs beduidend verkort in een van die glashuisproewe. Geen van die PGRs het in vergelyking met die kontrole, die blaar-oppervlakte, aantal blomme of aantal peule plant-1 beduidend verminder gedurende die studie. Primo MAXX® en Moddus® 250 EC het inteendeel daartoe geneig om die saadopbrengs onder veldtoestande te verhoog. Hierdie studie toon dus dat PGRs moontlik gebruik kan word om omval te verminder en die opbrengs van canola te verhoog. Deur die mees doeltreffendste PGRs op spesifieke kultivars te identifiseer, kan die resultate van hierdie studie bydra tot die kennis van die gebruik van PGRs op canola, om omval te voorkom en saadopbrengs in Suid-Afrika te verhoog.

Trichoderma species are soil-borne filamentous fungi widely utilized for their many plant health benefits, such as conferring improved growth, disease resistance and abiotic stress tolerance to their hosts. Many Trichoderma species are able to produce the auxin phytohormone indole-3-acetic acid (IAA), and its production has been suggested to promote root growth. Here we show that the production of IAA is strain dependent and diverse external stimuli are associated with its production. In in vitro assays, Arabidopsis primary root length was negatively affected by the interaction with some Trichoderma strains. In soil experiments, a continuum effect on plant growth was shown and this was also strain dependent. In plate assays, some strains of Trichoderma spp. inhibited the expression of the auxin reporter gene DR5 in Arabidopsis primary roots but not secondary roots. When Trichoderma spp. and A. thaliana were physically separated, enhancement of both shoot and root biomass, increased root production and chlorophyll content were observed, which strongly suggested that volatile production by the fungus influenced the parameters analyzed. Trichoderma strains T. virens Gv29.8, T. atroviride IMI206040, T. sp. "atroviride B" LU132, and T. asperellum LU1370 were demonstrated to promote plant growth through volatile production. However, contrasting differences were observed with LU1370 which had a negative effect on plant growth in soil but a positive effect in plate assays. Altogether our results suggest that the mechanisms and molecules involved in plant growth promotion by Trichoderma spp. are multivariable and are affected by the environmental conditions.

The potential growth-regulating compound 4-chloroglutaranilic acid (CGA) was tested in whole-plant bioassay systems which utilized sunflower seedlings (Helianthus annuus, L.). Test systems included the growth of plants in soil , solid inert (Vermiculite) substrate, and hydroponic (Seed-Pak) pouches.

Plants naturally host complex microbial communities in which the plant and the symbiotic partners act as an integrated metaorganism. These communities include beneficial (i.e. plant growth promoting, PGP) microorganisms which provide fundamental ecological services able to enhance host plant fitness and stress tolerance. PGP microorganisms represent a potential bioresource for agricultural applications, especially for desert farming under the harsh environmental conditions occurring in hot/arid regions (i.e. drought and salinity). In this context, understanding the ecological aspects of the associated microorganisms is crucial to take advantage of their ecological services. Here, hot/desert ecosystems were selected and two contrasting plant categories were used as models: (i) wild plants (i.e. speargrasses) growing in hot-desert sand dunes and (ii) the main crop cultivated in desert ecosystems, the date palm. By using highthroughput DNA sequencing and microscopy, the ecology and functionality of the microbial communities associated with these plants were characterized. Additionally, the PGP services of bacteria isolated from date palm were explored. I found that the harsh conditions of the desert strongly affect the selection and assembly of microbial communities associated with three different speargrass species, determining a plant species-independent core microbiome always present among the three plant species and carrying important PGP traits. On the contrary, in agroecosystems where desert farming practices are used, the plant species, i.e. date palm exerts a stronger selective pressure than the environmental and edaphic factors favoring the recruitment of conserved microbial assemblages, independent of the differences in the soil and environmental conditions among the studied oases. Such selective pressure also favors the recruitment of conserved PGP microorganisms (i.e. Pseudomonas sp. bacterial strains) able to protect their host from salinity stress through the induction of root architectural changes regulated by the modification of the root system auxin homeostasis. Overall, we found that deserts are unique ecosystems that challenge the paradigm of microbial community assembly, as it was defined from studies in non-arid ecosystems. The understanding of the ecological features regulating the ecological properties of such unique microbial community assembly will be a key-step to improve the chances of successful application of ‘PGP microorganisms’ in arid agroecosystems.

Basés sur la bio-oxidation de la matière organique, le compostage et le vermicompostage émettent des quantités non négligeables de CO2. Ainsi, ce travail s’intéresse (1) à la stabilisation potentielle du carbone de la matière organique compostable due à l’ajout de minéraux, avec et sans vers, et (2) l’influence des minéraux sur la maturité et la qualité du compost final. La première expérience consista en une incubation de matière organique, permettant d’obtenir différents composts et vermicomposts, avec et sans minéraux, de suivre les émissions de carbone et d’analyser les produits obtenus. Une deuxième incubation a été menée pour étudier l’effet de ces produits en tant qu’amendement sur un sol. Enfin, le suivi de la croissance de A.Thaliana en présence de co-composts et co-vermicomposts en tant que fertilisant fut réalisé. La présence de minéraux lors du compostage induit une baisse des émissions de carbone, probablement due à la formation d’associations organo-minérales ou bien par un changement des communautés microbiennes. De plus, les co-composts, en tant qu’amendement semblent augmenter les stocks de carbone du sol, comparé à un compost classique. Enfin, bien que l’aspect fertilisant des co-composts obtenus soit optimum, ils n’ont pas amélioré la croissance d’A.Thaliana. La présence de vers lors du co-compostage a augmenté les émissions de carbone mais l’effet positif des minéraux sur la minéralisation était toujours observable. De plus, les vers ont augmenté la biodisponibilité des nutriments et le co-vermicompost a permis d’améliorer les propriétés du sol ainsi que la croissance des végétaux comparé à un (vermi)compost classique et un co-compost. / Due to bio-oxidative mechanisms, composting and vermicomposting produce a large amount of CO2 emissions. Therefore, in this study we aimed to assess (1) the potential stabilization of carbon of fresh organic matter due to mineral presence, with and without worms, and (2) the influence of minerals on maturity and quality of the finished products. The first experiment was based on a laboratory incubation of fresh organic matter, which allowed to obtain composts and vermicomposts, with and without minerals, to monitor carbon emissions and to analyse the final products. A second incubation was carried out to investigate the effect of these products as organic amendment on an arenic cambisol. Finally, the last experiment was carried out to assess the use of co-composts and co-vermicomposts as potting media, by following the growth of. A.Thaliana. The presence of minerals during composting induced a decrease of carbon emission, likely due to the formation of organo-mineral associations or shift of microbial communities. Moreover, the use of co-compost as soil conditioner may allow to increase soil carbon storage, compared to a regular compost. Although the physico-chemical characteristics of the end-products were optimum for its use as potting media, no beneficial aspects on A.Thaliana growth has been observed. In presence of worms during co-composting, the carbon emissions were increased due to worm activities but the positive effect of minerals was still observed. In addition, worms improved the nutrient availability in the end products. Therefore, co-vermicompost tended to improve soil properties and to enhance plant growth compared to a regular (vermi)compost.

A Araucaria angustifolia é uma espécie vegetal de vital importância para a manutenção da Floresta Ombrófila Mista (Floresta de Araucária), ecossistema no qual ocorre naturalmente. A araucária apresenta elevado valor sócio-econômico e ambiental e, devido à intensa exploração predatória a que foi submetida, hoje se encontra criticamente ameaçada de extinção. A destruição dessa preciosa espécie vegetal ocasionaria graves consequências ao ecossistema, que poderiam envolver a redução da diversidade de inúmeros animais, plantas e micro-organismos, os quais estão intimamente associados e apresentam grande dependência de A. angustifolia. Pesquisas envolvendo particularmente a caracterização de rizobactérias promotoras do crescimento de plantas (RPCP), nunca foram realizadas em A. angustifolia. Assim, o objetivo do presente estudo foi realizar o isolamento, a seleção e a caracterização de rizobactérias com potencial de promoção do crescimento e biocontrole de fungos fitopatogênicos em A. angustifolia. Os isolados obtidos foram selecionados quanto à capacidade para a promoção do crescimento por meio da produção de ácido indolacético (AIA), solubilização de fosfato inorgânico, produção de fosfatases, fixação assimbiótica de N2, este último através da análise de acúmulo total de nitrogênio em meio de cultura e análise de redução do acetileno (ARA). Também foram selecionadas rizobactérias através da avaliação de mecanismos indiretos de ação, como produção de sideróforos e antagonismo a Fusarium oxysporum, Cylindrocladium candelabrum e C. pteridis, fitopatógenos de espécies arbóreas. Os isolados mais promissores foram caracterizados através da análise do perfil de ácidos graxos da membrana celular (FAME), BOX-PCR e sequenciamento parcial do gene 16S rRNA. Foram isoladas 97 rizobactérias, sendo submetidas aos testes fenotípicos. Todos os isolados apresentaram ao menos uma característica positiva para os mecanismos de promoção do crescimento avaliados, excetuando-se a produção de quitinases. Dentre os isolados obtidos, 18 produziram AIA, 27 foram capazes de solubilizar fosfato inorgânico, 37 foram positivos para sideróforos e 83 foram hábeis produtores de fosfatases. Com relação à fixação assimbiótica de N2, 20 isolados foram positivos para a formação de película em meio de cultura livre de nitrogênio, no entanto, nenhum diferiu significativamente do controle, sem nitrogênio, quando analisado o acúmulo deste elemento em meio de cultura. Por outro lado, 3 isolados foram capazes de reduzir acetileno a etileno. Quarenta e cinco isolados formadores de endósporos apresentaram antagonismo a F. oxysporum. Os isolados B4, B15, B27, B35, B36, B42 e RISP2, caracterizados como Bacillus spp., destacaram-se como bons antagonistas aos fitopatógenos avaliados. Também foi verificada a presença de estirpes com múltiplos mecanismos de ação. A análise genotípica dos isolados mais promissores através da técnica de BOX-PCR apresentou a formação de dois grandes grupos, expressando nitidamente o agrupamento dos isolados formadores de endósporo. A técnica FAME e o sequenciamento do gene 16s rRNA concordaram em caracterizar os melhores isolados como pertencentes às famílias Bacillaceae (9 isolados), Enterobacteriaceae (11) e Pseudomonadaceae (1). Até onde sabemos, este é o primeiro estudo a relacionar a espécie Ewingella americana a diversos mecanismos de promoção do crescimento. Osresultados obtidos demonstram grande potencial de aplicabilidade dessas rizobactérias como biofertilizantes e no controle biológico de fitopatógenos em A. angustifolia. / Araucaria angustifolia is a plant species of vital importance for the maintenance of the Mixed Ombrophylous Forest (Araucaria Forest) ecosystem in which it occurs naturally. Araucaria has a high socio-economic and environmental value, and due to its intense predatory exploitation, it is critically endangered. The destruction of this precious plant species would cause serious consequences to the ecosystem, which could involve a reduction of the diversity of many animals, plants and microorganisms, which are closely associated and reveal a great dependence on A. angustifolia. Studies involving plant growth promoting rhizobacteria (PGPR) and their characterization have never before been performed in A. angustifolia. The objective of this study was to isolate, select and characterize rhizobacteria with potential for growth promotion and biocontrol of plant pathogenic fungi in A. angustifolia. The isolates were selected by means of their potential to produce indole acetic acid (IAA), to solubilize inorganic phosphate, to produce phosphatase, and for asymbiotic N2 fixation. The latter was estimated by analyzing the accumulation of nitrogen in the culture medium and by the acetylene reduction assay (ARA). Rhizobacteria were also selected through the evaluation of indirect action mechanisms such as siderophore production and antagonism to Fusarium oxysporum, Cylindrocladium candelabrum and C. pteridis, all pathogens of trees. The most promising isolates were characterized by analyzing the fatty acid methyl ester (FAME), by BOX-PCR and partial sequencing of the 16S rRNA gene. Ninety seven rhizobacteria were isolated and subjected to the phenotypic tests. All isolates presented at least one positive feature, characterizing them as potential PGPR, except for the production of chitinases. Among these isolates, 18 produced IAA, 27 were able to solubilize inorganic phosphate, 37 were positive for siderophores and 83 were phosphatases producers. Regarding the asymbiotic N2 fixation, 20 isolates were effective in the pellicle formation in nitrogen free culture medium, however, none differed significantly from the control, when analyzed for the accumulation of N in the culture medium. Furthermore, three isolates were able to reduce acetylene to ethylene. Forty five isolates were endospore formers and antagonistic to F. oxysporum. The isolates B4, B15, B27, B35, B36, B42 and RISP2, characterized as Bacillus spp. stood out as good antagonists of the evaluated plant pathogens. We also observed the presence of strains with multiple mechanisms of action. Genotypic analysis of the most promising isolates by the BOX-PCR technique showed the formation of two major groups, expressing clearly the grouping of isolates forming endospores. Both techniques, FAME and PCR, resulted in the same grouping of the most effective isolates as belonging to Bacillaceae (9 isolates), Enterobacteriaceae (11) and Pseudomonadaceae (1). As far as we know, this is the first study to include the bacterium Ewingella americana among the PGPR. The results demonstrate a potential application of these rhizobacteria as biofertilizers and for biological control of plant pathogens in A. angustifolia.

O uso de fertilizantes minerais nas culturas, inclusive no milho, é uma prática agrícola que provoca danos ambientais e prejuízos econômicos. Uma alternativa promissora, visando melhorar a produtividade e reduzir o uso de fertilizantes, é a utilização de microrganismos benéficos associados às plantas, particularmente as rizobactérias promotoras de crescimento. Essas bactérias vivem na rizosfera e são capazes de colonizar diversos tecidos vegetais, beneficiando o desenvolvimento das plantas através de mecanismos de promoção de crescimento. Na busca por alternativas sustentáveis e mais rentáveis, o presente trabalho teve como objetivo isolar, caracterizar, selecionar e monitorar rizobactérias associadas ao guaranazeiro da Amazônia que possuíssem características promotoras de crescimento vegetal para serem usadas como inoculantes em sementes de milho. Amostras de solo rizosférico de cinco plantas de guaranazeiros foram coletadas e foi realizado o isolamento das rizobactérias. A caracterização molecular foi realizada através do sequenciamento do gene 16S rDNA para análise da diversidade microbiana e identificação das linhagens. Avaliou-se a capacidade das linhagens de produzir ácido indol acético (AIA), fixar nitrogênio atmosférico, solubilizar fosfato inorgânico e de produzir sideróforos. A análise da diversidade microbiana indicou semelhança entre a comunidade bacteriana isolada da rizosfera do guaranazeiro e a do milho encontrada na literatura. Foi observada predominância do filo Proteobacteria, sendo em sua maioria representado pelo gênero Burkholderia. Do total das 101 linhagens obtidas, 89% foram capazes de produzir AIA, 23% fixaram nitrogênio atmosférico, 43% solubilizaram fosfato inorgânico e 24% produziram sideróforos. Cinco linhagens foram selecionadas para o ensaio de promoção de crescimento de milho em casa de vegetação, essas foram identificadas pelo sequenciamento completo do gene 16S rDNA e compuseram os tratamentos como segue: RZ2MS9 - Bacillus sp. (T1), RZ2MS16 - Burkholderia ambifaria (T2) e consórcio (T3) de 5 linhagens (RZ1MS6 - Burkholderia vietnamiensis, RZ1MS11 - Burkholderia sp., RZ2MS9 - Bacillus sp., RZ2MS16 - Burkholderia ambifaria e RZ4MS18 - Delftia acidovorans). As análises estatísticas comprovaram que as linhagens RZ2MS9 (Bacillus sp.) e RZ2MS16 (Burkholderia ambifaria) foram eficientes como promotoras de crescimento em milho, aumentando a altura cerca de 39 e 33%, respectivamente, em relação ao controle, o peso seco da parte aérea cerca de 236 e 114% e do sistema radicular cerca de 248 e 136%, respectivamente, comparado ao controle não inoculado. A linhagem RZ2MS9 (Bacillus sp.) aumentou o conteúdo de Ca nas plantas inoculadas. Para o monitoramento da colonização da bactéria na planta, a linhagem RZ2MS16 (Burkholderia ambifaria) foi transformada com o plasmídio pCM88 e passou a expressar a proteína GFP, sendo possível observar, por microscopia óptica de fluorescência, que, 12 dias após a inoculação na planta, a bactéria encontra-se concentrada no cilindro central da raiz da mesma de onde pode se inserir em algum vaso condutor e colonizar a planta sistematicamente, o que demonstra que a mesma se comporta como endofítica da planta de milho. Assim, fica evidente a importância da exploração de plantas de clima tropical, como o guaranazeiro, como reservatórios de bactérias com enorme potencial biotecnológico. As bactérias estudadas nesse trabalho tem grande potencial para serem utilizadas futuramente como inoculantes. / The use of mineral fertilizers on agricultural crops, including maize, is a practice that causes environmental damage and economical losses. A promising alternative, to improve productivity and reduce fertilizer use is the use of benefical microrganisms associated with plants, particulary the growth-promoting rhizobacteria. These bacteria live in the rhizosphere and are capable of colonizing different plant tissues, benefiting plant growth through mechanisms of growth promotion. In the search for sustainable and more profitable alternative, this study aimed to isolate, characterize, monitor and select rhizobacteria associated with Amazonian guarana that possessed characteristics of plant growth promoters for use as inoculants in maize seeds. Rhizosphere soil samples from five guarana plants were collected and the isolation of rhizobacteria was performed. Molecular characterization was performed by sequencing the 16S rDNA for analysis of microbial diversity and identification of strains. It was evaluated the ability of strains to produce indole acetic acid (IAA), fix atmospheric nitrogen, solubilize inorganic phosphate and produce siderophores. The analysis of microbial diversity indicated similarity between the bacterial community isolated from the rhizosphere of guarana and that found in the literature to maize. It was observed predominance of Proteobacteria phylum, being mostly represented by the genus Burkholderia. Of the total 101 strains obtained, 89% were able to produce IAA, 23% fixed atmospheric nitrogen, 43% solubilized inorganic phosphate and 24% produced siderophores. Five strains were selected for testing growth promotion of maize under greenhouse conditions; these were identified by complete sequencing of the 16S rDNA and compose the treatments as follows: RZ2MS9 - Bacillus sp. (T1), RZ2MS16 - Burkholderia ambifaria (T2) and consortium (T3) of 5 strains (RZ1MS6 - Burkholderia vietnamiensis, RZ1MS11 - Burkholderia sp., RZ2MS9 - Bacillus sp., RZ2MS16 - Burkholderia ambifaria and RZ4MS18 - Delftia acidovorans). Statistical analyzes showed that the strains RZ2MS9 (Bacillus sp.) and RZ2MS16 (Burkholderia ambifaria) were effective as growth promoters in maize, increasing the height about 39 and 33%, respectively, compared to control, shoot dry weight about 236 and 114% and root system about 248 and 136%, respectively, compared to uninoculated control. The strain RZ2MS9 (Bacillus sp.) increased Ca content in inoculated plants. For monitoring of colonization of the bacteria in the plant, the strain RZ2MS16 (Burkholderia ambifaria) was transformed with the plasmid pCM88 and passed to express GFP, being possible to observe by fluorescence microscopy that, 12 days after inoculation on the plant, the bacteria is concentrated in the root central cylinder where the same can be inserted into a vessel conductor and consistently colonize the plant, proving the endophytic life style of this strain during maize interaction. Thus, it is clear the importance of tropical plants, like guarana, as reservoirs of bacteria with great biotechnological potential. The evaluated bacteria accessed in this work have great potential to be used in future as inoculants.

As condições divergentes do ambiente in vitro, como elevadas concentrações de sacarose, de reguladores de crescimento, de substâncias tóxicas, quando comparadas com o ambiente ex vitro, refletem-se em um desequilíbrio da relação entre compostos antioxidantes versus compostos oxidantes, resultando em elevada formação de espécies reativas de oxigênio, culminando no estabelecimento de um estresse oxidativo in vitro. No entanto, mesmo sendo capazes de conduzirem a morte celular, as espécies reativas de oxigênio atuam como importantes sinalizadoras do crescimento e desenvolvimento vegetal, por alterarem o padrão de expressão gênica, o metabolismo e a competência celular, sendo nesse aspecto considerado benéfico um nível moderado de estresse oxidativo para desencadear uma determinada rota morfogênica. Diante disso, o presente trabalho objetivou induzir o estresse oxidativo, suplementando o meio de cultura com reguladores de crescimento do grupo das citocininas e auxinas, com a finalidade de compreender a atuação deste evento nas respostas morfogênicas in vitro do pinhão manso (Jatropha curcas L.). Para tanto, utilizou-se sementes de pinhão manso de três procedências (CNPAE 101: Rio Verde, GO; CNPAE 115: Xambrê, PR e CNPAE 224: São Francisco do Glória, MG), as quais foram germinadas in vitro para a obtenção das plântulas e utilização do terço mediano do hipocótilo como explante nos experimentos de indução de estresse oxidativo in vitro. A análise morfofisiológica permitiu selecionar os tratamentos que induziram respostas organogênicas, que juntamente com o grupo controle, tiveram a quantificação da peroxidação lipídica, as atividades das enzimas antioxidantes catalase, superóxido dismutase e ascorbato peroxidase, determinadas, assim como o estabelecimento do perfil proteico de cada tratamento e a realização de análises histológicas e histoquímicas. Os resultados evidenciaram que as respostas morfogênicas foram dependentes do tipo e combinação de regulador de crescimento presente no meio de cultura; e ficou evidente pela quantificação da peroxidação lipídica e das atividades das enzimas antioxidantes, que a ausência de regulador de crescimento no meio de cultura foi o principal indutor do estresse oxidativo, permitindo constatar que quanto mais suave o estresse oxidativo, mais promissoras eram as respostas organogênicas constatadas nos explantes hipocotiledonares. Desta forma, o maior nível de estresse oxidativo constatado no grupo controle, relacionou-se negativamente com a resposta morfogênica obtida neste grupo, quando comparado aos demais tratamentos que apresentaram um nível de estresse oxidativo mais ameno e, consequentemente, uma resposta morfogênica mais promissora. O perfil proteico evidenciou o padrão existente de algumas bandas, independentemente da procedência considerada, confirmando a proximidade genética dos diferentes acessos de pinhão manso no Brasil. As análises histológicas demonstraram a ocorrência de organogênese indireta, com o desenvolvimento de calos organogênicos, ao passo que nas análises histoquímicas somente a presença de lipídios não foi detectada, enquanto proteínas totais, compostos fenólicos e amido foram constatados em pelo menos um dos três materiais analisados, para as três procedências de pinhão manso. Os resultados obtidos possibilitaram estabelecer uma relação entre o estresse oxidativo in vitro, a resposta morfogênica e o efeito dos reguladores de crescimento presentes no meio de cultura, além do potencial sucesso de produção de pinhão manso pela cultura de tecidos. / The environmental divergent conditions in vitro culture , such as high concentrations of saccharose , growth regulators, toxic substances, and others, when compared with the ex vitro conditions, reflected in an imbalance of antioxidants versus oxidant compounds relationship, resulting in an elevated formation of reactive oxygen species, which culminates in the establishment of an oxidative in vitro stress. However, even being able to conduce cell death, reactive oxygen species act as an important signaling of plant growth and development by altering the pattern of gene expression, cellular metabolism and cellular competence, being considerate beneficial in this context in which a moderate level of oxidative stress is required to trigger a morphogenetic route. Therefore, this study aimed to induce oxidative stress, supplementing the culture medium with growth regulators group of cytokines and auxin, with the purpose of understand the role of these event in vitro morphogenetic responses of physic nut (Jatropha curcas L.). Hence, were used physic nut´s seeds of three provenances (CNPAE 101: Rio Verde, GO; CNPAE 115: Xambrê, PR and CNPAE 224: São Francisco do Glória, MG ), which were in vitro germinated to obtain the seedlings and the middle third of hypocotyls that was used as explant in experiments to induction in vitro oxidative stress. The morphophysiological analysis allowed to select the treatments that induced the organogenic responses, which along with the control group, had the quantification of lipid peroxidation, activities of antioxidant enzymes catalase, superoxide dismutase and ascorbate peroxidase, determined as well as the establishment of the protein profile of each treatment and the realization of histological and histochemical analyses. The results showed that the morphogenic responses were dependent on the type and combination of growth regulators present in the culture medium; and with the lipid peroxidation quantification as well as antioxidant enzyme activities, it became evident that the oxidative stress was mainly caused by the absence of growth regulators in the culture medium, allowing noted that the softer oxidative stress, were the most promising responses organogenic found in hypocotyls. Thus, the higher level of oxidative stress observed in the control group correlated negatively with the morphogenic response obtained in this group when compared to the other treatments that showed a level of milder oxidative stress and, consequently, a more promising morphogenic response. The protein profile showed some band pattern, regardless of the provenances considered, confirming the low genetic distance between different accessions of Jatropha in Brazil. Histological analysis demonstrated the occurrence of indirect organogenesis, with the development of organogenic calli, whereas in histochemical analyzes only the presence of lipids was not detected while total proteins, phenolic compounds and starch were found in at least one of the three materials analyzed for the three provenances of physic nut. Taking together all the obtained data, it was possible to establish a relationship between oxidative stress, the morphogenic response in vitro and the effect of growth regulators in the culture medium as well as prove the potential success of the production of jatropha tissue culture.