Self-assembled monolayers (SAMs) of organosulfur precursors on gold have been extensively used since they offer a wide range of technological applications such as corrosion inhibition, lubrication, adhesion promotion/inhibition, nanofabrication, chemical and biosensors, catalysis, and molecular electronics. Furthermore, the electronic and optical properties of aromatic SAMs make them a potential candidate for molecular electronics. However, these practical applications are limited by the short-range ordering, low packing density, irreproducibility, and inferior quality of SAMs, which are more critical for aromatic SAMs. Therefore, the discovery of alternative precursors is essential. This thesis reports for the first time, the use of organic sulfenyl chlorides as precursors for the modification of gold surfaces. These precursors may help to overcome some practical limitations of the traditional organosulfur precursors. The modification is done in a non-aqueous medium. Characterization of the modified surfaces is performed by X-ray photoelectron spectroscopy (XPS), cyclic voltammetry (CV), polarization modulation infrared reflection absorption spectroscopy (PM-IRRAS), and scanning tunnelling microscopy (STM). Through the use of 4-nitrophenyl sulfenyl chloride, evidence for the formation of well-ordered aromatic SAMs formation on gold is provided. XPS data shows that the modification involves the scission of the S-Cl bond. PM-IRRAS studies further indicate that the adsorbed molecules are nearly vertically oriented on the surface. Both short and long-range well-ordered aromatic SAMs (a 4 x √3 rectangular and √3 x √3 hexagonal unit cells) are obtained from the STM images using two different modification conditions. This molecular density is usually only observed for aliphatic SAMs using the traditional precursors. Along with the main hexagonal lattice, the reversible distinct superstructures including hexagons, partial hexagons, parallelograms, and zigzags resulting from specific arrangements of adsorbed molecules provide submolecular details. This is the first direct experimental example, where the STM has shown its effectiveness to provide physical structure information of standing-up aromatic SAMs at room temperature. This work also provides some insight into a heavily debated issue regarding the origin of the various features and contrasts obtained in STM images of SAMs. The use of 2-nitrophenyl sulfenyl chloride and 2,4-dinitrophenyl sulfenyl chloride for the formation of aromatic SAMs on Au provides some insight regarding the modification extent and the effect of a nitro substituent (at ortho position ) on the quality of nitrophenyl thiolate SAMs on gold. XPS, PM-IRRAS, electrochemistry and STM provide evidence for the formation of less ordered, low density and less stable SAMs that may decompose to sulfur at longer modification times. The efficient deposition of sulfur on gold is observed using a series of substituted methane sulfenyl chlorides (triphenylmethane sulfenyl chloride, trichloromethane sulfenyl chloride and chlorocarbonyl sulfenyl chloride). The XPS, STM and electrochemical data show the formation of high density sulfur phases. These include rhombus, rectangular, and zig-zag sulfur structures. A mechanism is suggested involving the cleavage of the S-Cl bond and the ejection of the molecular backbone. This study also suggests that substituted methane sulfenyl chlorides do not form long-range ordered SAMs.

Interactions of gas-phase molecules with surfaces are important in many ordinary events, such as ozone depletion, corrosion of metals, and heterogeneous catalysis. These processes are controlled by the bonding, diffusion, and reactivity of the impinging gas species. Our research employs molecular beam techniques and well-characterized surfaces to study these processes. The goal of this study is to better understand how the physical and chemical nature of the surface interface influences energy transfer dynamics in gas-surface collisions. An atomic beam is used to probe the energy transfer dynamics in collisions of Argon with model surfaces of functionalized self-assembled monolayers (SAMs) (1-dodecanethiol and 11-mercapto-1-undecanol) on gold. The beam is directed towards the surface at an incident angle of 30 degrees and the scattered Ar atoms are detected at the specular angle of 30 degrees. Time-of-flight scans measure the velocity distributions of atoms leaving the surface, which correlate with the energy transfer dynamics of the impinging gas atoms. Gas-surface energy transfer experiments are accomplished by directing an 80 kJ/mol Ar atomic beam at a clean Au(111) surface and surfaces composed of hydroxyl-terminated or methyl-terminated SAMs on Au(111). The fractional energy transferred to the bare gold surface is 69 %, while it is grater than 77 % for the monolayer-covered surfaces. The extent of thermalization on the surface during the collision is significantly greater for the methyl-terminated surface than for the hydroxyl-terminated surface. Since the two monolayers are similar in structure, packing density, and mass, the differences in scattering dynamics are likely due to a combination of factors that may include differences in the available energy modes between the two terminal groups and the hydrogen-bonding nature of the hydroxyl-terminated SAM. / Master of Science

Les procédés lithographiques sont de nos jours très utilisés au sein de l’industrie de la microélectronique pour réaliser des matériaux fonctionnels de taille nanométrique. L’obtention de composants de taille de plus en petite (<100 nm) nécessite la mise en œuvre de nouveaux procédés de fabrication. Les travaux de recherches réalisés dans cette thèse portent sur l’étude d’un nouveau concept de lithographie par microcopie à force atomique (AFM). L'objectif principal est d'utiliser la pointe d’un AFM comme outil pour promouvoir des réactions catalysées sur une zone bien définie d’une surface greffée. De cette manière, diverses molécules ont pu être greffées sélectivement et spatialement pour conduire à des objets finis en 3 dimensions. Afin de mieux comprendre le mécanisme réactionnel, différents paramètres physico-chimiques ont été étudiés dans la première partie : vitesse de balayage de la pointe, force appliquée, distance interligne lors de la gravure du motif, largeur de lignes limites, durée de vie de la pointe catalytique et influence de la flexibilité du catalyseur présent sur la pointe. La deuxième partie consiste à la réalisation de nanostructures avec des molécules aux propriétés physico-chimiques particulières (optique, électrique, catalytique) ainsi qu’à la construction de nanostructures tridimensionnelles. Quelques résultats marquants sont l’obtention d’une largeur de ligne limite de 25 nm, d’une surface de greffage minimum de 480 µm² et d’une structure de forme pyramidale composée de trois niveaux moléculaires distincts. / Lithography processes are widely used in the microelectronics industry for the realization of functional materials of nanometric size. To obtain components increasingly small (<100 nm) the development of new manufacturing processes is requires. The research presented in this thesis concerns the study of a new concept of lithography by Atomic Force Microscopy (AFM). The main objective is to use the tip of an AFM as a tool to promote catalysed reactions on a well defined zone of a grafted surface. In this way, diverse molecules could be grafted selectively and spatially to form three dimensioned objects. To better understand the reaction mechanism, different physico-chemical parameters were studied in the first part: the scanning speed of the tip, the strength applied, the interline spacing during the engraving pattern, the width lines limits, the life time of the catalytic tip and the influence of the catalyst flexibility coated to the tip. The second part consists in the realization of nanostructures with molecules that have particular physico-chemical properties (optical, electric, catalytic) and the construction of three-dimensional nanostructures. Some pertinent results are the achievement of line width of 25 nm, a minimum grafted surface of 480 µm² and the formation of a structure of pyramidal shape constituted of three different molecular levels.

Molecular self-assembly has recently attracted significant attention for possible application in organic electronic and optoelectronic devices, such as self-assembled monolayer field-effect transistors (SAMFETs) and functional self-assembled integrated circuits. Self-assembly combines the advantages of low temperature solution processability, regio-selective monolayer adsorption and nano-scale control of film thickness. Much progress has been made in improving device performance using self-assembled monolayers (SAMs). However, most SAMFET devices reported to date showed current modulation only with submicrometre channels, with low device yields and poor reproducibility as a result of limited lateral interconnection of the semiconducting layer.In an attempt to address these issues, this thesis presents an investigation of the synthesis and properties of conjugated SAM molecules for use as the charge transporting layer in SAMFETs. Chapter 1 gives a comprehensive introduction to SAM-based surface systems, organic semiconductors and their use in OFETs and SAMFETs. Chapter 2 discusses attempts to design and synthesise p-type conjugated molecules capable of self-assembly on oxide surfaces based on a phenylene-bithiophene semiconducting core. The optical and electrochemical properties, as well as the thermal behaviour of these molecules are studied in detail. This theme is carried over to Chapter 3, which describes the synthesis, chemical and physical characterisation of two families of n-type SAM molecules. These molecules consist of NTCDI cores with hexyl or cyclohexyl chains as end-capping groups. Incorporation of a selection of materials as the active layer in OFETs or SAMFETs to evaluate the charge transport is demonstrated in Chapter 4. Monolayer films based on p-type monochlorosilane-terminated SAM molecules are made using the solution assembly technique and characterised by contact angle and AFM. OFETs made from DH-PTTP by both thermal evaporation and spin coating show high mobilities comparable to the best values reported in the literature. Top-contact SAMFETs show a hole mobility of 1.1 × 10-3 cm2V-1s-1 in air, consistent with those of solution processed DH-PTTP based OFETs. Finally, an overview of the project and some suggestions for future work are presented in Chapter 5.

In this paper, a nanometer-sized gold electrode with an effective radius around several tens of nanometers has been modified with a monolayer of alkanethiols. There are pinholes in the monolayer, and the pinholes can be used as very small electrode. Our evaluation shows that it is possible to have only one pinhole on the monolayer covered electrode. The single pinhole electrode has been used to study the electrochemical behaviors of fast and slow electrochemical reactions. Our results show that the electrochemical response of a slow electrochemical reaction is not a Butler-Volmer response if the electrode is small enough.

Lors de la mise au point de biocapteurs, le contrôle de l'état de surface sur laquelle sontimmobilisées les biomolécules est un paramètre crucial pour la fiabilité et la reproductibilité desmesures. Pour ce travail de Thèse, deux objectifs principaux ont été fixés :- obtenir de façon reproductible des films organiques fonctionnels capables de rendre lessurfaces inorganiques biocompatibles afin d'immobiliser des biomolécules sans les dénaturer.- se doter d'outils innovants afin d'analyser la distribution de biomolécules sur la surface etd'évaluer leur activité biologique à l'échelle de la molécule unique.L'immobilisation a été réalisée sur des SAMs terminées par une fonction acide carboxylique.Pour imager les surfaces nous avons choisi la Microscopie Atomique de Force (AFM) qui permetd'obtenir des informations à l'échelle nanométrique et de mesurer des interactions moléculaires del'ordre du piconewton (10-12 N).Des CNTs, générés par dépôt chimique en phase vapeur, sont fixés sur une pointe AFM. Puis Ilssont biofonctionnalisés selon un protocole de trempage original afin d'obtenir une modificationchimique sélective de leur apex. Les interactions entre un récepteur, immobilisé sur la surface, et sonligand, lié de façon covalente au CNT, sont mesurées à l'échelle de la molécule unique. / During the development of biosensors, control of the surface on which the biomolecules areimmobilized is a crucial parameter for the reliability and reproducibility of the measurements. For thisPhD work, two main objectives were set:- obtain in a reproducible way functional organic films able to make inorganic surfacebiocompatible for the immobilization of biomolecules without any denaturation.- develop innovative tools in order to analyze the distribution of biomolecules on the surface etevaluate their biological activity at single molecule scaleThe immobilization step was done on SAMs terminated by a carboxylic acid function.In order to image surfaces, Atomic Force Microscopy (AFM) was chosen. This technique permits toobtain information at nanometric scale and to measure molecular interactions in the range ofpiconewton forces (10-12 N).MWCNTs were linked to a commercial AFM tip by micro-welding under optical microscopy. CNTswere biofunctionalized at the nanotube apex by an original dipping procedure.The interactions between a ligand, immobilized on the surface, and a receptor covalently linked to aCNT have been characterized.

Graphene, a two-dimensional counterpart of three-dimensional graphite, has attracted significant interest, due to its distinctive electrical and mechanical properties, for developing electronic, optoelectronic, and sensor technologies. In general, doping of graphene is important, as it gives rise to p-type and n-type materials, and it adjusts the work function of the graphene. This adjustment is necessary in order to control charge injection and collection in devices such as solar cells and light emitting devices. Current methods for graphene doping involve high temperature process or interactions with chemicals that are not stable. Moreover, the process of transferring graphene from its growth substrate and its exposure to the environment results in a host of chemical groups that can become attached to the film and alter its electronic properties by accepting or donating electrons/holes. Intentional and controllable doping of the graphene, however, requires a deeper understanding of the impact of these groups. The proposed research will attempt to clarify the unintentional doping mechanism in graphene through adsorption or desorption of gas/vapor molecules found in standard environments. A low temperature, controllable and defect-free method for doping graphene layers will also be studied through modifying the interface of graphene and its support substrate with self-assembled monolayers (SAMs) which changes the work function and charge carriers in the graphene layer. Furthermore, current methods of chemical vapor deposition synthesis of graphene requires the film to be transferred onto a second substrate when the metal layer used for growth is not compatible with device fabrication or operation. To address this issue, the proposed work will investigate a new method for wafer scale, transfer-free synthesis of graphene on dielectric substrates using new carbon sources. This technique allows patterned synthesis on the target substrate and is compatible with standard device fabrication technologies; hence, it opens a new pathway for low cost, large area synthesis of graphene films.

Les cryptophanes sont des molécules sphériques pouvant encapsuler dans leur cavité lipophile des molécules neutres (halogénométhanes, xénon) mais aussi des espèces ioniques comme les cations césium et thallium. Notre objectif a été d’immobiliser ces cages moléculaires de manière covalente sur un support solide dans le but de créer un matériau capable d’extraire des cations toxiques comme le thallium en milieu aqueux. Différentes stratégies ont été envisagées pour optimiser l’immobilisation de dérivés du cryptophane-A sur des surfaces de silice et d’or (surfaces planes et nanoparticules magnétiques de type coeur-écorce). Les cryptophanes-A mono-acide (1) et hexa-acide(2) ont été immobilisés sur des surfaces de silice préalablement fonctionnalisées par des groupements amines. Le cryptophane-A alcanethiol (3), ainsi que les cryptophanes 1 et 2 modifiés par lacystéamine (respectivement 4 et 5) ont été immobilisés sur des surfaces d’or. La caractérisation des surfaces planes par spectroscopie infrarouge de réflexion-absorption par modulation de polarisation(PM-IRRAS) a permis d’estimer le taux de recouvrement des différentes monocouches de cryptophanes et, ainsi, d’évaluer la méthode d’immobilisation la plus efficace. Un taux de recouvrement proche de 100% a été obtenu pour le cryptophanes 3 immobilisé sur les surfaces d’or.Ce composé a également été immobilisé de façon très efficace sur des nanoparticules magnétiques(γ-Fe2O3/SiO2) enrobées d’une nano-écorce d’or. Ces résultats permettent d’envisager la synthèse d’un cryptophane portant cinq fonctions hydroxyles et une fonction thiol afin de créer des matériaux capables d’extraire des cations toxiques. / Cryptophanes are spherical molecules that can encapsulate neutral molecules(halogenomethanes, xenon), and ionic species like cesium and thallium cations in their lipophiliccavity. Our objective was to covalently immobilize these molecular cages onto solid substrates tocreate a material able to extract toxic cations such as thallium in aqueous media. Different strategieswere considered to optimize the immobilization of cryptophane-A derivatives onto silica and goldsurfaces (flat surfaces and core-shell magnetic nanoparticles). Mono-acid cryptophane-A (1) andhexa-acid cryptophane-A (2) were immobilized onto silica surfaces that were functionalized by aminogroups beforehand. Alcanethiols cryptophane-A (3), 1 and 2 modified by cysteamine (cryptophanes 4and 5 ,respectively) were immobilized onto gold surfaces. Flat surfaces were characterized bypolarization modulation infrared reflection-absorption spectroscopy (PM-IRRAS) to estimate thesurface coverage of different cryptophane monolayers and to evaluate the most effective method. Asurface coverage close to 100% was obtained for the cryptophane 3 immobilized onto gold surfaces.This compound has been also immobilized efficiently onto magnetic nanoparticles (γ-Fe2O3/SiO2)coated with gold nano-shell. These results allow to consider the synthesis of cryptophane bearing fivehydroxyl and one thiol functions to create materials able to extract toxic cations

Le contrôle des propriétés physicochimiques et de l’état de surface des solides constituent un enjeu majeur pour le développement des biotechnologies, et notamment des bio-capteurs. Pour des applications en analyse et diagnostic biologique, la fonctionnalisation des surfaces à base de silicium peut être réalisée grâce à la formation d’un nano-film organique appelé SAM (Self-Assembled Monolayer). L'objectif de ce travail de thèse est ainsi de synthétiser des monocouches sur des substrats de silice afin de les rendre biofonctionnels en vue de développer une plateforme de biodétection polyvalente.Pour ce faire, deux types d'agents de couplages ont été envisagés : l'un possédant un motif azoture et l'autre une biotine. L’obtention de ces deux types de molécules a fait l’objet d’un travail de synthèse permettant d’aboutir à de nouveaux organosilanes fonctionnels directement greffables sur des surfaces de SiO2. La biofonctionnalité est introduite sur le substrat par la biotine, soit directement lors de la formation de la SAM, soit par chimie click sur les monocouches fonctionnalisées par des azotures.Les différentes surfaces obtenues ont ensuite été caractérisées par Spectroscopie Infrarouge de Réflexion–Absorption par Modulation de Polarisation (PM-IRRAS) et par Microscopie de Force Atomique (AFM). La bioactivité des SAMs biotinylées a enfin été évaluée par un protocole mettant en jeu une streptavidine modifiée par une enzyme (la HRP) capable de catalyser des réactions d’oxydoréduction de molécules chromogènes. / Control of surface physicochemical properties is a key aspect for the development of many biotechnological tools, such as biosensors. For analysis and diagnostic, the functionalization of silica-based surfaces may be carried out through the creation of an organic nano-film named a Self-Assembled Monolayer (SAM). The main goal of this PhD work is thus to synthesize monolayer on SiO2 substrates in order give them biofunctionality, aiming at developing a versatile biodetection platform.In order to do so, we focused on the synthesis of two types of coupling agents, either bearing an azide moiety or a biotin. This organic synthesis work led to two new sorts of functional organosilanes which can be directly grafted onto silica surfaces. Biofunctionality itself is introduced by the biotin, either through the formation of the monolayer or through click chemistry on azide-functionalized SAMs.Said surfaces were then fully characterized using Polarization Modulation Infrared Reflection-Absorption Spectroscopy (PM-IRRAS) an Atomic Force Microscopy (AFM). Bioactivity of biotinylated surfaces was then monitored using streptavidin conjugated with HRP in order to catalyze the redox reaction of chromogenic substrates.

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