Thesis (B.S.)--Butler University, 2009. / Includes bibliographical references.

Thesis (Ph. D.)--University of California, Santa Cruz, 1994. / Typescript. Includes bibliographical references.

Thesis (Ph.D.)--Duquesne University, 2005. / Title from document title page. Abstract included in electronic submission form. Includes bibliographical references and index.

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Thesis (Ph.D.)--Boston University / PLEASE NOTE: Boston University Libraries did not receive an Authorization To Manage form for this thesis or dissertation. It is therefore not openly accessible, though it may be available by request. If you are the author or principal advisor of this work and would like to request open access for it, please contact us at open-help@bu.edu. Thank you. / Ligand binding sites in proteins generally include "hot spots" that contribute a large fraction of the binding free energy and, therefore, are of prime interest in drug design. To find hot spots on the protein surface, a protein can be screened against libraries of small organic molecules to identify interaction sites using nuclear magnetic resonance (NMR) spectroscopy or the X-ray crystallographic technique Multiple Solvent Crystal Structures (MSCS). Small organic molecules can bind at several locations on the surface of a protein, but many different molecules congregate only in "consensus sites" identifying the hot spots. The mapping algorithm FTMAP is a computational analogue of experimental fragment screening methods. The principles of computational mapping were used for the development and testing of the binding site identification algorithm FTSITE, implemented as a web-based server. Finding ligand binding sites in silico is a classical challenge, and the success rate of identifying the ligand binding site as the first predicted site has increased to 83% during the last decade. FfSITE, based on biophysical modeling of protein-ligand interactions, increased the success rate to 94% on the same established test sets. Critical to the success of FfSITE is the use of multiple small molecules as probes; screening by X-ray crystallography and NMR spectroscopy had demonstrated a tendency of ligand binding sites to bind small organic compounds ranging 1n shapes, sizes, and polarities. Further, FfSITE does not use surrogate measures of ligand binding propensity such as site geometries and dimensions. It was shown that FTSITE can also successfully identify allosteric ligand binding sites that can serve as candidates for drug design. Furthermore, the hot spot information provided by FfMAP was shown to guide the development of core fragments, found by experimental fragment screening , into optimal ligands for a number of drug target proteins. Computational mapping can also be used for fragment-based drug design by finding fragments with preference for some regions of the binding site. To facilitate this analysis , a server enabling the fast generation of force field parameters for user-specified small molecules or fragments was developed. / 2031-01-02

Kyoto University (京都大学) / 0048 / 新制・課程博士 / 博士(工学) / 甲第13789号 / 工博第2893号 / 新制||工||1427(附属図書館) / 26005 / UT51-2008-C705 / 京都大学大学院工学研究科材料化学専攻 / (主査)教授 瀧川 敏算, 教授 木村 俊作, 教授 田中 文彦 / 学位規則第4条第1項該当

La part des technologies membranaires en tant que technique de séparation a rapidement augmenté au cours de ces dernières années grâce à leur large gamme d'applications. Le marché en pleine expansion nécessite des matériaux polymères avancés qui montrent une résistance accrue vis-à-vis du gonflement et de la plastification en séparation de gaz (GS) ou vis-à-vis de solvants forts et des conditions de pH extrême en nanofiltration en milieu organique (SRNF). Aujourd'hui, la réticulation apparait comme une technologie prometteuse pour répondre à ces nouveaux besoins. La réticulation chimique est l'une des techniques les plus couramment utilisées et est basée sur une réaction chimique entre un polymère (par exemple un polyimide) et un réticulant (par exemple une diamine ou un diol). Cependant pour des polymères, tels que les polysulfones (PSU), qui ne contiennent pas de groupes fonctionnels chimiquement réactifs dans leur squelette, cette technique n'est pas viable. Enfin la réticulation chimique implique plusieurs étapes de traitement et induit des flux de déchets nocifs. La recherche d'une technique de traitement rapide et verte généralement applicable est donc d'une première importance. Deux nouvelles techniques de réticulation, que sont les traitements par rayons ultraviolets (UV) pour par faisceaux d'électrons (EB), ont donc été explorées dans cette thèse afin d'obtenir des membranes stables chimiquement et thermiquement, ce qui est intéressant pour les applications SRNF. Des membranes asymétriques, composées d'un réseau polymère semi-interpénétrant (SIPN), ont été préparées par séparation de phase induite par un solvant (NIPS). Le PSU a été choisi comme polymère grâce à ses caractéristiques intrinsèques suivantes : propriétés thermiques et mécaniques importante, photosensibilité et absence de groupes réactifs. Les membranes réticulées à structure SIPN ont été obtenues par traitement UV et EB. Ces techniques possèdent plusieurs avantages par rapport à la réticulation chimique : une réduction de la production de déchets, des besoins énergétiques plus faibles et des temps de traitement rapides. Dans une première partie, nous avons étudié l'influence de la fonctionnalité du réticulant, de l'énergie du rayonnement et du rapport polymère / réticulant sur l'efficacité de la réticulation par EB. Des agents de réticulation à base d'acrylate ont été utilisés. Les membranes obtenues ont été caractérisées par des expériences en ATR-FTIR, SEM et de filtration, ainsi que des essais de stabilité contre des solvants forts. Le meilleur type de réticulant et sa concentration optimale sous une dose d'EB optimale ont ensuite été sélectionnés pour les études suivantes. Dans la seconde partie, nous avons exploré les effets du rapport solvant / co-solvant et du temps d'évaporation avant la précipitation des membranes en PSU réticulées par la suite soit par UV et soit par EB; le tétrahydrofurane (THF) ou le 1,4-dioxane (DIO) étant utilisés comme solvant. Dans les deux cas, les morphologies membranaires différent en fonction des paramètres étudiés de l'inversion de phase. L'augmentation du temps d'évaporation réduit la formation de macrovides et permet l'apparition de structures spongieuses. Les flux de solvant sont généralement restés trop faible pour que les membranes soient vraiment utiles en SRNF. Un post-traitement a été effectué pour augmenter le flux en immergeant les membranes réticulées dans du dimethylformamide (DMF) pendant 48 h. Les membranes résultantes ont des perméances plus élevées et des taux de rejets plus faibles. / The importance of membrane technology as a separation technique has increased rapidly over the past decades thanks to its broad range of applications. The expanding market brings along the requirement of advanced polymeric materials, which show resistance towards swelling and plasticization in gas separation (GS) and towards harsh solvents and extreme pH conditions in solvent resistant nanofiltration (SRNF). At this stage, cross-linking has emerged as a promising technology to overcome these issues. Chemical cross- linking is one of the most commonly used techniques and is based on a chemical reaction between a polymer (e.g. polyimide) and a cross-linker (e.g. diamine or diol). However, for polymers which do not contain chemically reactive groups in their backbone, such as polysulfones (PSU), this technique is not feasible. Additionally, chemical cross-linking involves several processing steps and causes harmful waste streams, triggering the quest for a generally applicable, fast and green curing technique. Two new curing techniques, namely ultraviolet (UV) and electron beam (EB) curing, were explored in this thesis, in order to obtain chemically and thermally stable membranes, hence being attractive for SRNF applications. Asymmetric membranes, composed of a semi-interpenetrating polymer network (SIPN), were prepared via non-solvent induced phase separation (NIPS). PSU was chosen as polymer because of its robust thermal and mechanical properties, photosensitivity and lack of reactive groups. Cross-linked membranes with SIPN structure were obtained via UV and EB-curing. In the first part, the influence of cross-linker functionality, radiation energy dose and polymer/crosslinker ratio on the EB-curing efficiency was investigated. Acrylate-based cross-linkers were employed. The obtained membranes were characterized with ATR-FTIR, SEM and filtration experiments, together with stability testing against harsh solvents. The best type of cross-linker and its optimum concentration under optimum EB-dose were then selected for further studies. In the second part, the effects of solvent/co-solvent ratio and the evaporation time before precipitation of UV and EB-cured PSU SRNF-membranes were explored, using tetrahydrofuran (THF) or 1,4-dioxane (DIO) as co-solvent. Both UV and EB-cured PSU membrane morphologies differed as function of the studied phase inversion parameters. Increasing evaporation time reduced macrovoid formation with appearance of spongy structures. The flux generally remained too low for membranes to become really useful in SRNF. A post treatment was performed to increase the flux by immersing UV-cured PSU-based membranes in dimethylformamide (DMF) for 48 h. The resultant membranes showed higher permeances and lower rejections, making them especially useful as potential candidates as stable supports in the preparation of thin film composite membranes. In a third part, the mechanical characteristics, the effect of casting thickness and the surface properties of the membranes cross-linked by both irradiation methods were further studied. Additionally, the swelling behavior of UV-cured thin PSU films as function of different curing parameters (i.e. radiation dose and cross-linker functionality) was analyzed with ellipsometry. In conclusion, solvent stable asymmetric PSU membranes were developed by two simple, environmentally friendly and highly effective methods. The performance and enhanced chemical resistance of the cured membranes show high potential for implementing both cross-linking procedures in adequate industrial applications after further optimization.

The rapid advancement of drug delivery systems (DDS) has raised the possibility of using functional engineered nano/micro-particles as drug carriers for the administration of active pharmaceutical ingredients (APIs) to the affected area. The major goals in designing these functional particles are to control the particle size, the surface properties and the pharmacologically active agents release in order to achieve the site-specification of the drug at the therapeutically optimal rate and dose regimen. Two different equipment (i.e. glass capillary microfluidic device and micro-engineered membrane dispersion cell) were utilised in this study for the formation of functional nano/micro-particles by antisolvent precipitation method. This method is based on micromixing/direct precipitation of two miscible liquids, which appear as a straightforward method, rapid and easy to perform, does not require high stirring rates, sonication, elevated temperatures, surfactants and Class 1 solvents can be avoided. Theoretical selection of a good solvent and physicochemical interaction between solvent-water-polymer with the aid of Bagley s two-dimensional graph were successfully elucidated the nature of anti-solvent precipitation method for the formation of desired properties of functional pharmaceutical nano/micro-engineered particles. For the glass capillary microfluidic experiment, the organic phase (a mixture of polymer and tetrahydrofuran/acetone) was injected through the inner glass capillary with a tapered cross section culminated in a narrow orifice. The size of nanoparticles was precisely controlled by controlling phase flow rates, orifice size and flow configuration (two- phase co-flow or counter-current flow focusing). The locations at which the nanoparticles would form were determined by using the solubility criteria of the polymer and the concentration profiles found by numerical modelling. This valuable results appeared as the first computational and experimental study dealing with the formation of polylactide (PLA) and poly(ε-caprolactone) (PCL) nanoparticles by nanoprecipitation in a co-flow glass capillary device. The optimum formulations and parameters interactions involved in the preparation of paracetamol encapsulated nanoparticles (PCM-PCL NPs) using a co-flow microfluidic device was successfully simulated using a 25-full factorial design for five different parameters (i.e. PCL concentration, orifice size, flow rate ratios, surfactant concentration and paracetamol amount) with encapsulation efficiency and drug loading percentage as the responses. PCM-loaded composite NPs composed of a biodegradable poly(D,L-lactide) (PLA) polymer matrix filled with organically modified montmorillonite (MMT) nanoparticles were also successfully formulated by antisolvent nanoprecipitation in a microfluidic co-flow glass capillary device. The incorporation of MMT in the polymer matrix improved the drug encapsulation efficiency and drug loading, and extended the rate of drug release in simulated intestinal fluid (pH 7.4). The encapsulation of MMT and PCM in the NPs were well verified using transmission electron microscopy (TEM), energy dispersive x-ray spectroscopy (EDS), x-ray diffraction (XRD), differential scanning calorimetry (DSC), thermogravimetric analysis (TGA) and attenuated total reflection-Fourier transform infrared spectroscopy (ATR-FTIR). PCL drug-carrier nanoparticles were also produced by rapid membrane micromixing combined with nanoprecipitation in a stirred cell employing novel membrane dispersion. The size of the NPs was precisely controlled by changing the aqueous-to-organic volumetric ratio, stirring rate, transmembrane flux, the polymer content in the organic phase, membrane type and pore morphologies. The particle size decreased by increasing the stirring rate and the aqueous-to-organic volumetric ratio, and by decreasing the polymer concentration in the aqueous phase and the transmembrane flux. The existence of the shear stress peak within a transitional radius and a rapid decline of the shear stress away from the membrane surface were revealed by numerical modelling. Further investigation on the PCL nanoparticles loaded immunosuppressive rapamycin (RAPA) drug were successfully synthesised by anti-solvent nanoprecipitation method using stainless steel (SS) ringed micro-engineered membrane. Less than 10 μm size of monohydrate piroxicam (PRX) micro-crystals also was successfully formed with the application of anti-solvent precipitation method combined with membrane dispersion cell that has been utilised in the formation of functional engineered nanoparticles. This study is believed to be a new insight into the development of integrated membrane crystallisation system.

Orientador: Valquíria Campos / Banca: Isaac Jamil Sayeg / Banca: Natan de Jesus Pimentel Filho / Resumo: O ácido γ-poliglutâmico (γ-PGA) é uma homopoliamida composta por unidades de D- e L- de ácido glutâmico. Trata-se de biopolímero aniônico que possui propriedades como solubilidade em água, atoxicidade, além de ser comestível e biodegradável. Devido a estas propriedades, possui muitas aplicações ambientais, dentre elas, o uso como incremento ao processo de floculação, no tratamento de água. O ácido γ-poliglutâmico pode ser produzido, através da fermentação da soja utilizando-se da bactéria Bacillus subtilis encontrada em alimentos como o natto, consumido como iguaria no Japão. Grande parte das aplicações de biopolímeros está diretamente envolvida com seu potencial de resposta às alterações do meio em que se encontram dissolvidos. Uma abordagem voltada ao entendimento das alterações estruturais, conformações e associações de cadeias poliméricas apresenta alto interesse científico, assim como aplicações práticas. O objetivo deste trabalho volta-se pela extração e quantificação do ácido γ-poliglutâmico de produtos comerciais, natto e PGα21Ca, para estudos como agente floculante. Observou-se diferença expressiva, na produção de ácido γ-poliglutâmico, em marcas distintas de natto. A metodologia de extração γ-PGA que representou maior eficiência foi através do uso de metanol refrigerado como agente de precipitação, onde em apenas uma extração obteve-se o biopolímero com atividade floculante, quando comparado à extração com o álcool etílico e acetona. Quanto ao método de extração de ... (Resumo completo, clicar acesso eletrônico abaixo) / Abstract: The γ-polyglutamic acid (γ-PGA) is a homopolyamide composed of D- and L- units of glutamic acid. It is anionic biopolymer that has properties such as water solubility, no toxicity, in addition to being edible and biodegradable. Due to these properties, it has many environmental applications, among them, the use as an increment to the flocculation process, in the treatment of water. γ-polyglutamic acid can be produced by fermenting soybeans using Bacillus subtilis bacteria found in foods such as natto, consumed as a delicacy in Japan. Most applications of biopolymers are directly involved with their potential to respond to changes from the environment in which they are dissolved. An approach aimed at understanding the structural changes, conformations and associations of polymer chains presents a high scientific interest, as well as practical applications. The objective of this work is the extraction and quantification of γ-polyglutamic acid from commercial products, natto and PGα21Ca, for studies as a flocculating agent. There was an expressive difference in the production of γ-polyglutamic acid in different natto brands. The methodology of γ-PGA extraction that represented greater efficiency was through the use of cooled methanol as a precipitation agent, where in only one extraction was obtained the biopolymer with flocculating activity, when compared to the extraction with ethyl alcohol and acetone. As for the γ-PGA extraction method of PGα21Ca, the ethyl alcohol extraction was efficient in the separation of the γ-polyglutamic acid, with only small residual of calcium being observed / Mestre

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