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The effect of management practices used by smallholder farmers to improve soil quality and increase maize yield was examined in an 80 ha. micro-watershed of central Malawi. Because of the complexity inherent in smallholder farming systems, this research proposed the combination of participatory methods with analytical techniques developed in field ecology, such as multivariate and spatial analysis. During a Participatory Rural Appraisal (PRA), farmers identified factors potentially influencing soil quality and maize yield. One hundred and seventy-six (176) plots were located in twenty-nine (29) fields and characterized for management practices and biophysical characteristics. Soil samples were collected at each plot and analysed for a suite of properties. The maize yield was measured for both 1996--97 and 1997--98 seasons. A formal survey was used to gather information on household characteristics. Results showed that management practices that were promoted by a previous extension project, such as alley cropping and the planting of grass on contour ridges, were strongly correlated and found mainly in fields located closer to house compounds. Farmers with a higher proportion of their land under wetland gardens tended to use less agroforestry. Food security was associated with households that were able to purchase inorganic fertilizers, had larger landholding size, and owned livestock and woodlots. The effect of management practices on maize yield and soil quality was partially confounded with characteristics of the plot, such as slope, degradation level, number of years under cultivation or pest damage. Higher maize yield was observed in plots that were better managed, as expressed by the combination of different management practices, lower pest incidence, fewer erosion signs and higher soil fertility. Some positive effects of alley cropping on soil quality were observed in plots that were cultivated for a longer period and located on flatter land. This study demo