There has been much interest in the last decade concerning the factors that influence diversity, especially how diversity and ecosystem processes may be linked. This study was based in small, cobble streams in South East Queensland. Its aim was to determine how the diversity and composition of consumers (the grazer guild) is influenced by both the production and composition of benthic algae, at different spatial scales. It also aimed to ascertain whether this response differs among grazer sub guilds with different dispersal capabilities. Ten sites in the Upper Brisbane and Mary catchments were sampled. The sites were selected to provide a range of productivity and composition. Grazers from these sites included snails and elmids, and larval mayflies, moths, and caddisflies. Grazer diversity and composition appeared to be structured by catchment scale influences, but environmental variables also affected which animals colonised patches and microhabitats (cobbles) within catchments. Primary productivity and algal composition could not be separated, with highly productive reaches also having a high cover of filamentous algal taxa. Grazer diversity displayed strongly positive, linear relationships with algal variables at the reach scale. It had a negative relationship with filamentous algae at the cobble scale, and a non-significant hump-shaped relationship with primary productivity. Survey data alone could not separate whether grazers were responding to habitat or food-related drivers, or to variations in productivity. Experimental manipulation of algal variables at the patch scale, using light and nutrients, also could not clearly uncouple the relationship between primary productivity and filamentous algal cover. Once reach scale variation was removed, grazer diversity displayed hump-shaped relationships with algal variables, including algal diversity. Much of this variation was due to patterns in mobile grazers, as sedentary grazers did not respond to algal variation at this scale. The density of the more mobile taxa showed similar patterns to those at the cobble scale (hump-shaped). A second field experiment was carried out in order to further investigate the responses of invertebrates to algal community composition at the cobble scale. Data from all three chapters suggested that as sites shifted to a dominance of filamentous algae, often with an associated increase in GPP, there was also a shift in the grazer community towards more sedentary grazers and away from the more mobile taxa. This also occurred at the cobble scale in the second experiment. The gut analysis and diet studies in the third chapter indicated that while many grazers consumed filamentous algae, it was not assimilated. This suggests that the preferences for sedentary taxa for cobbles and reaches dominated by filamentous algae are likely to be due to some other, possibly habitat-related, factor such as flow or predation refuge. The study provides a rare examination of relationships between primary productivity and consumer diversity in freshwater streams, and finds support for the pattern found in other systems of monotonic relationships of these two variables at large scales and hump-shaped relationships at smaller scales. It emphasises the importance of understanding other, potentially confounding, aspects of communities of producers, and investigates the possible roles of the most important of these (community composition) in structuring consumer communities in the small cobble streams of South-East Queensland.

The intertidal red algal genus Porphyra is found on rocky shores worldwide. In the Northern Hemisphere the genus is well studied but there is a paucity of data on southern hemisphere Porphyra and even less on New Zealand Porphyra. The species� taxonomy has been undergoing revision since the late 1990�s, when it was discovered that the main species P. columbina and P. lilliputana reported for New Zealand were a combination of several endemic species. These species are found from the low to the high intertidal watermark; hence they are exposed to fluctuating stresses such as desiccation, temperature, high light and UV radiation. Algae have evolved a number of mechanisms to adapt to naturally changing increasing abiotic conditions, such as accumulation of screening pigments and changes in antioxidant metabolism during light stress. For terrestrial plants, polyamines (small aliphatic amines) have been shown to be involved in protecting cells from damage under conditions of stress including UV-B radiation; such mechanisms have yet to be identified in algae. The overall aim of this study was to determine the importance of cellular processes in shaping the community structure of Porphyra on a wave-exposed shore on the east coast of the South Island, New Zealand. Porphyra distribution and community structure was assessed by regular monthly monitoring of presence and absence of Porphyra along four transect lines at the site. Enviromnental information was recorded to determine the effects of temperature, light, UV radiation, humidity and wind on Porphyra�s spatial and temporal distribution. Regular tissue samples were taken for species identification by the application of primers, which were specifically designed during this study. P. cinnamomea and Porphyra spec. "ROS 54" were identified as dominant species present almost throughout the year with a pronounced maximum in presence during late winter and spring, and some weeks of absence during April or May. The two dominant species were recorded from the low to the high intertidal shore, but the mid intertidal was identified as the preferred habitat. Other species that were found were rare and only present for a few months in a very restricted area. It was hypothesised that free radical generation and antioxidant metabolism are associated with desiccation tolerance in Porphyra. An attempt was made to investigate the impact of desiccation stress on Porphyra. The extraction process of antioxidants was problematic and no reproducible results could be obtained. It was attempted to investigate the spatial distribution of spores and conchocelis of different Porphyra species in the field, and determine if those found at Brighton Beach are species-specific in their morphology. This indicated that the two main Porphyra species at Brighton Beach not only prefer to occupy the same habitat but that they also have a morphologically similar conchocelis phase. Mechanisms on a cellular level such as polyamine metabolism affected by environmental (abiotic) stresses are related to the alga�s ability to adapt to stress and therefore can have an effect on Porphyra�s distribution along the shore and its presence throughout the year. The depletion of the ozone layer has become an important issue as the effects of increased UV radiation on the environment, especially the intertidal habitat, are revealed. Marine macrophytes possess the main three. polyamines: putrescine, spermidine and spermine of varying levels. For the few species studied, Rhodophyta generally contain higher levels of polyamines than Chlorophyta, while polyamine levels for the one heterokontophyte analysed were between Chlorophyta and Rhodophyta. Levels of the three most common polyamines (putrescine, spermidine, spermine) were determined in P. cinnamomea under controlled UV exposure. Tissue discs were exposed to visible light (PAR), PAR and UV-A or PAR, UV-A and UV-B radiation. Discs exposed to PAR and PAR and UV-A showed little change in polyamine levels over a six day trial period, while discs exposed to PAR, UV-A and UV-B showed a significant increase in free, bound soluble and bound insoluble polyamines over the same period of time. Correspondingly levels of ADC and ODC, two enzymes involved in polyamine synthesis, were measured. ODC levels changed little while ADC levels increased significantly during UV-B treatment, indicating that under UV-B stress polyamines are mainly synthesized via the ADC pathway. The experimental set-up and process of this study has not been applied in macroalgal polyamine research and results obtained are the first indication that increased levels of polyamines are involved in protection and/or protection mechanisms in macrophytic algae to prevent UV-B damage.

In response to concern that excessive macroalgal growth and accumulation was occurring in some inshore areas of Lake Macquarie, the distribution, abundance and seasonality of macroalgae was investigated in relation to nutrient input and power station cooling water. Macroalgal dry weight biomass was measured at ten sites on a monthly basis for two years, with an analysis of community structure conducted using Multi-Dimensional Scaling. The macroalgal community in Lake Macquarie was typical of those found in other New South Wales coastal lagoons, exhibiting considerable spatial and temporal variation. A close similarity was observed in macroalgal community structure at sites affected by urban nutrient input, these being characterised by a high biomass often attributable to only one or two species. These nuisance macroalgae were mostly green algae, which were almost entirely absent from other sites. Biomass at sites affected by urban nutrient input was generally within the range documented for eutrophic estuaries elsewhere. Analysis of macroalgal community structure showed no evidence of large-scale changes macroalgal communities attributable to the effects of power station cooling water except within 500m of the outfall. At sites affected by a 1-2??C temperature increase, community structure and the magnitude of the biomass were similar to sites deemed as being relatively free of human impact. A reduction in species diversity occurred only within the immediate discharge zone, where water temperatures were approximately 6??C above ambient temperatures. Excessive growth of nuisance macroalgal species was not observed at any of the sites influenced by power station cooling water. There were no distinct patterns in seasonality of macroalgal growth in this study, though the greatest biomass appeared to occur in spring. The irregular temporal variation in macroalgal growth suggests that the most significant factors affecting growth occur on a time scale of weeks to months. It is therefore likely nutrient input to the nearshore through surface runoff is an important influence on the distribution and abundance of macroalgae in Lake Macquarie. This emphasises the need to reduce nitrogen and phosphorus input from urban sources in Lake management.

<p>For a complete picture of the lake ecosystem, it is necessary to understand the mechanisms regulating biomass and nutrient status (nutrient limitation, optimal supply, or surplus) of benthic algae, which are important primary producers and a food resource for grazers. This thesis gives an overview of the natural variation of benthic algae at different scales of space and time and on different substrates, and unravels some of the underlying factors. Algal nutrient status was assessed using the C:N:P (carbon:nitrogen:phosphorus) ratio of the entire natural benthic community. A review, observations, and experiments confirmed that a C:N:P ratio of about 158:18:1 (molar basis) represented an optimal nutrient supply, and that substantially higher C:N, N:P, or C:P ratios reflected algal growth limitation caused by an N or P nutrient deficiency. </p><p>Horizontal variation of benthic algal biomass and nutrient status was patchy, of similar amount for all investigated distances, substrates, and lakes, and constituted a dominant proportion of the total variation. For example, patches of nutrient limited algae were found within only 10 m distance from patches with a nutrient surplus. Thus, horizontal variation should not be neglected when sampling benthic algae in lakes. Field observations suggested an impact of wind, nutrients, and grazers on the horizontal variation. Light and nutrients might have caused the observed vertical and temporal variation. Field experiments confirmed a simultaneous control of benthic algal biomass by nutrients and grazing, mediated by light and temperature. Grazing effects were larger than nutrient effects, but the comparison of natural communities in lakes of different trophy suggested that benthic algal biomass was controlled by nutrients in the long run. </p><p>An important nutrient supply was animal excretions, causing a low C:N:P ratio of epizoon on zebra mussels, and algal communities associated with macrograzers. A field experiment revealed that 15N circulated one week longer in epizoon associated with a sessile caddisfly than in surrounding epilithon. In conclusion, the regulation of benthic algal biomass and nutrient status in lakes is complex, and benthic animals should be looked at not only as grazers, but also as a nutrient source.</p>

<p>The aim of this thesis was to identify general structuring mechanisms in benthic food webs within the framework of ecological stoichiometry theory. Ecological stoichiometry is defined as the balance of multiple chemical substances in ecological interactions and explicitly considers the combined dynamics of key elements such as carbon (C), nitrogen (N) and phosphorus (P). Ecological stoichiometry theory was developed for pelagic environments, thus it must be tested whether the same mechanisms are applicable to benthic environments. </p><p>In this thesis, ecological stoichiometry theory was used as a framework to investigate nutrient pathways in benthic littoral ecosystems. I conducted one invertebrate field sampling and six experiments. In the experiments, factors such as grazing, light, nutrients and fish presence were manipulated.</p><p>The results showed that stoichiometric variability in consumers could mostly be explained by taxa. However, there was some stoichiometric variability due to sampling season, site, and nutrient enrichment. </p><p>Grazing mostly increased periphyton N and P content, although nutrient recycling effects were dependent on grazer stoichiometry. Grazing changed benthic algal community composition by increasing the proportion of grazing resistant algae species. Additionally, grazing decreased algal diversity, especially under nutrient poor conditions. The manipulation of fish presence revealed that fish affected primary producer biomass and stoichiometry through nutrient recycling. </p><p>The manipulation of abiotic factors, such as light and nutrient addition could affect periphyton nutrient content, biomass and benthic algal chlorophyll a content. The separate addition of N or P led to an increase of the added nutrient in the periphyton. Increased light intensities led to a decreased cellular chlorophyll a content and increased C:nutrient ratios. </p><p>This thesis arrives at the conclusion that periphyton-grazer-predator interactions in the benthic are bound by stoichiometric constraints. Nutrient recycling by benthic invertebrates and fish are important mechanism in benthic littoral ecosystems.</p>

For a complete picture of the lake ecosystem, it is necessary to understand the mechanisms regulating biomass and nutrient status (nutrient limitation, optimal supply, or surplus) of benthic algae, which are important primary producers and a food resource for grazers. This thesis gives an overview of the natural variation of benthic algae at different scales of space and time and on different substrates, and unravels some of the underlying factors. Algal nutrient status was assessed using the C:N:P (carbon:nitrogen:phosphorus) ratio of the entire natural benthic community. A review, observations, and experiments confirmed that a C:N:P ratio of about 158:18:1 (molar basis) represented an optimal nutrient supply, and that substantially higher C:N, N:P, or C:P ratios reflected algal growth limitation caused by an N or P nutrient deficiency. Horizontal variation of benthic algal biomass and nutrient status was patchy, of similar amount for all investigated distances, substrates, and lakes, and constituted a dominant proportion of the total variation. For example, patches of nutrient limited algae were found within only 10 m distance from patches with a nutrient surplus. Thus, horizontal variation should not be neglected when sampling benthic algae in lakes. Field observations suggested an impact of wind, nutrients, and grazers on the horizontal variation. Light and nutrients might have caused the observed vertical and temporal variation. Field experiments confirmed a simultaneous control of benthic algal biomass by nutrients and grazing, mediated by light and temperature. Grazing effects were larger than nutrient effects, but the comparison of natural communities in lakes of different trophy suggested that benthic algal biomass was controlled by nutrients in the long run. An important nutrient supply was animal excretions, causing a low C:N:P ratio of epizoon on zebra mussels, and algal communities associated with macrograzers. A field experiment revealed that 15N circulated one week longer in epizoon associated with a sessile caddisfly than in surrounding epilithon. In conclusion, the regulation of benthic algal biomass and nutrient status in lakes is complex, and benthic animals should be looked at not only as grazers, but also as a nutrient source.

The impacts of two strains of the dinoflagellate Alexandrium tamarense, differing in lytic activity, on the abundance and the composition of microbial communities (&lt;150 μm) were studied in North Sea water during spring with Phaeocystis globosa as a dominant species. Cell-free suspensions (supernatant) of exponentially growing lytic and non-lytic Alexandrium culture were added at different concentrations to natural microbial communities under nutrient rich conditions. The non-lytic strain had a positive impact on diatoms whereas the lytic strain suppressed phytoplankton growth in comparison to the control. P. globosa, present as single cells in the initial community, increased in abundance and formed colonies in all treatments. However, total abundance and number of colonies was low with lytic Alexandriumadditions, whereas shape of the colonies, but not abundance of cells, was affected by non-lytic Alexandrium additions. During the 4-day experiment, bacterial abundance was constantly higher with high lytic additions (highest concentration equivalent to 1000 cells ml−1) whereas nanoflagellate abundance in the same treatments was found to be lower at the end of the experiment. Initial bacterial community composition differed significantly among lytic Alexandrium, non-lyticAlexandrium and North Sea water. However, neither bacterial activity nor composition was significantly affected by the supernatants after 96 h. Our results indicated that Alexandrium allelochemicals do not inhibit growth and production of bacteria in seawater collected during spring in the North Sea. / Allelopathy among phytoplankton - a structuring force among phytoplankton

Ion exchange resins, commonly used in water treatment, demonstrate promise for the production of biodiesel from biomass feedstocks. The goal of this presented PhD research is to investigate novel uses of ion exchange resins for processing biodiesel feedstocks. Specifically, this research explored using ion exchange resins to remove free fatty acids (FFA) from soybean and waste cooking oils, catalyze transesterification of soybean oil, and catalyze in-situ conversion of dried algal biomass to biodiesel and other recoverable organics. The effect of temperature, moisture content, mixing rate, and resin drying on deacidification of soybean oil with 5% oleic acid feedstock was explored using Dowex Monosphere MR-450 UPW within a batch reactor. The resins were observed to remove up to 83 +/- 1.3% of FFA from soybean oil with less than 5% moisture content while operated at a 20% resin loading at 50 degrees C while mixing at 550 rpm. Once operation characteristics impacting deacidification were evaluated, a series of experiments were carried out to demonstrate the use of mixed bed resin to remove FFA from waste cooking oils. An investigation of wash solutions capable of regenerating the resins was also carried out. Using methanol to regenerate the resins resulted in more than 40% FFA removal over three regeneration cycles, highlighting the utility of resin regeneration as a cost saving measure. Transesterification of soybean oil on Amberlyst A26-OH, a basic ion exchange resin, in the presence of excess methanol was carried out to determine the mechanism of the reaction occurring on the surface. A batch reactor approach was used and reactions were carried out with and without FFA present in the soybean oil feed stock at a 20% resin loading at 50 degrees C while mixing at 550 rpm. When FFA was present in the feedstock and methanol is present in excess, the rate constant for methanol consumption increased. Based upon model fitting, the rate constant of methanol consumption was determined to be 2.08 x 10^-7 /sec with FFA absent and 5.39 x 10^-4/sec when FFA is present when the Eley-Rideal model was used to fit the data. In-situ conversion of dried algal biomass to biodiesel and other recoverable organics was investigated using a batch reaction system with 1 gram of algae. The system was operated with 40:60 methanol:hexane as the solvent system operated at 50 degrees C while mixing at 550 rpm over a range of catalyst loadings. The highest observed ester yield, approximately 60% yield (37 mg_ester/g_algae), was observed when air dried algae was reacted with a 20% resin. An evaluation of the reaction products showed a mixture of esters, phytol, alcohols, and ketones; highlighting the complexity of the reactions occurring during in-situ biomass conversion.

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Botryococcus braunii (Chlorophyta, Botryococcaceae) is a colony-forming green microalga that produces large amounts of liquid hydrocarbons, which can be converted into transportation fuels. While B. braunii has been well studied for the chemistry of the hydrocarbon production, very little is known about the molecular biology of B. braunii. As such, this study developed both apparatus and techniques to culture B. braunii for use in the genetic and biochemical characterization. During genetic studies, the genome size was determined of a representative strain of each of the three races of B. braunii, A, B, and L, that are distinguished based on the type of hydrocarbon each produces. Flow cytometry analysis indicates that the A race, Yamanaka strain, of B. braunii has a genome size of 166.0 +/- 0.4 Mb, which is similar to the B race, Berkeley strain, with a genome size of 166 +/- 2.2 Mb, while the L race, Songkla Nakarin strain, has a substantially larger genome size at 211.3 +/- 1.7 Mb. Phylogenetic analysis with the nuclear small subunit (18S) rRNA and actin genes were used to classify multiple strains of A, B, and L races. These analyses suggest that the evolutionary relationship between B. braunii races is correlated with the type of liquid hydrocarbon they produce. Biochemical studies of B. braunii primarily focused on the B race, because it uniquely produces large amounts of botryococcenes that can be used as a fuel for internal combustion engines. C30 botryococcene is metabolized by methylation to generate intermediates of C31, C32, C33, and C34. Raman spectroscopy was used to characterize the structure of botryococcenes. The spectral region from 1600?1700 cm^-1 showed v(C=C) stretching bands specific for botryococcenes. Distinct botryococcene Raman bands at 1640 and 1647 cm^-1 were assigned to the stretching of the C=C bond in the botryococcene branch and the exomethylene C=C bonds produced by the methylations, respectively. A Raman band at 1670 cm^-1 was assigned to the backbone C=C bond stretching. Finally, confocal Raman microspectroscopy was used to map the presence and location of methylated botryococcenes within a living colony of B. braunii cells.