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Integrative analysis of array comparative genomic hybridisation and microarray gene expression profiles in oesophageal adenocarcinomaGoh, Xin Yi January 2012 (has links)
No description available.
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Identification of a novel therapeutic strategy from molecular stratification of oesophageal adenocarcinomaOng, Chin-Ann Johnny January 2013 (has links)
No description available.
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Towards personalised therapy in oesophageal adenocarcinoma (from the LEO trial to the identification of SIRT2 as an inflammatory modulator)Schulz, Laura Katharina Elisabeth January 2014 (has links)
No description available.
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Tumoral immune privilege in a murine model of pancreatic ductal adenocarcinomaChan, Derek Steven Hung Che January 2016 (has links)
No description available.
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Evaluation of tumour perfusion and fibrosis in mouse models of pancreatic ductal adenocarcinoma, using MRIBell, Leanne Katherine January 2013 (has links)
Pancreatic Ductal Adenocarcinoma (PDA) is one of the most lethal solid malignancies primarily because it is staunchly resistant to conventional cytotoxic chemotherapies. Xenograft models are typically not sophisticated enough to reproduce the complex pathophysiology of the clinical disease. This is the main reason why treatments that have shown promise in preclinical mouse models have not translated into improvements in median survival in the clinic. Genetically engineered KPC mice develop PDA in situ which recapitulates the genetic, molecular and pathophysiological features of human PDA. Spontaneous KPC tumours are also chemoresistant and this mouse model therefore provides an ideal platform from which to study the biology of PDA. Recent evidence suggests that poor perfusion and extensive fibrosis may prevent the delivery of cytotoxic agents to neoplastic PDA cells and are therefore at least in part responsible for the chemoresistance demonstrated by human PDA tumours and spontaneous KPC tumours. In this thesis we use non-invasive Magnetic Resonance Imaging techniques (Dynamic ContrastEnhanced (DCE-) MRI, Magnetisation Transfer Imaging (MTI)) and SHG microscopy to evaluate the perfusion properties and fibrosis of three different mouse models of PDA: spontaneous KPC tumours, allografts initiated by transplantation of pancreatic tumour cells derived from a KPC tumour, and allografts initiated by co-transplantation of these cells with pancreatic stellate cells (fibrotic allografts). Using DCE-MRI and MTI we showed that the perfusion of spontaneous KPC tumours and fibrotic allografts decreases with increasing tumour volume while the tumour macromolecular content increases with increasing tumour volume. This is in contrast to the viable portion of non-fibrotic allografts which have a low macromolecular content and exhibit sustained moderate perfusion irrespective of tumour volume. Ex viva SHG microscopy clearly showed differences in the type, distribution and magnitude of fibrosis in these models. Using MTI, we showed a differential between spontaneous and transplanted tumours, but not between fibrotic and non-fibrotic allografts. We subsequently investigated the ability of MTI to detect treatment-induced depletion of the stroma in spontaneous KPC tumours, to assess its possible application as a non-invasive biomarker for treatment response in the clinic. However, we were unable to detect such depletion by MTI, although ex viva SHG microscopy confirmed that it did occur. In summary, our results contribute to the body of know_ledge on the biology of PDA and strengthen the evidence that early detection of PDA would be required to improve the chances of effective drug delivery to PDA tumours.
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Prognosis of resected, early-stage, lung adenocarcinoma patientsWalsh, Kathryn Jane January 2018 (has links)
Lung cancer is the leading cause of cancer related death worldwide; despite recent treatment developments survival rates remain poor and are closely related to the patient’s clinical stage. Even among patients with early-stage lung cancer, which is amenable to surgical resection, prognosis is highly variable; some go on to live disease-free for many years whereas others quickly recur. Although post-operative chemotherapy is available it has associated morbidities and it is unclear which patients would benefit; therefore, there is a need for more effective stratification of patients. The adenocarcinoma sub-type of lung cancer is known to be morphologically heterogeneous however the majority of observed growth patterns, assessed by light microscopy, can be characterised into one of five formations: lepidic, papillary, acinar, solid and micropapillary. The morphology of each tumour has been proposed as a marker of prognosis and several studies have published a link between the most prevalent growth pattern and prognosis; suggesting those with predominantly solid or micropapillary tumours to have the least favourable outcomes. Indeed, it is now recommended that the proportion of each growth pattern and the predominant growth pattern should be reported for all resected lung adenocarcinomas; although no differential treatments have been recommended based on this assessment. The aim of this study was to determine whether combining the analysis of clinicopathological; morphological; and candidate protein, molecular genetic and transcriptomic characteristics in a single cohort of 208 early-stage, resected, adenocarcinomas with clinical follow-up could be used to identify a subset of patients at high risk of recurrence. Comprehensive morphological analysis was carried out including the presence, proportion and number of individual growth patterns; the predominant growth pattern as well as features previously associated with tumour grade (the presence of large numbers of mitotic figures, apoptotic bodies, inflammatory cells, prominent nucleoli, pleomorphic tumour cells, dyscohesive tumour cells and large amounts of necrosis and scar tissue within the tumour). In addition, gene expression was assessed using a panel of 31 cell-cycle related genes, EGFR and KRAS mutation status was determined, and EGFR and TTF1 protein expression investigated. In this study the predominant growth pattern defined by histopathology showed no ability to identify a group of patients with a poorer prognosis either in univariable or multivariable analysis. Univariable analysis identified nodal status [hazard ratio of N1 compared to N0 was 2.16 (95% CI 1.48 to 3.16, p< 0.0005)], clinical stage [hazard ratios of stage IIa and IIb compared to stage Ia were 3.15 (95% CI 1.73 to 5.73, p< 0.0005) and 2.22 (95% CI 1.10 to 4.48, p= 0.025) respectively], the presence of a significant amount of the papillary growth pattern [the hazard ratio of those with less than 8.5% papillary pattern was 0.657 (95% CI 0.44 to 0.98, p= 0.035)], and overall tumour grade score (including an assessment of necrosis, mitosis, apoptosis, nucleoli, scar tissue and inflammatory cells) [hazard ratio 1.71 (95% CI 1.14 to 2.56, p= 0.008)] as significantly associated with prognosis. Multivariable analysis using Cox’s proportional hazards model identified clinical stage (p< 0.0005), the presence of a significant amount of the papillary growth pattern (p= 0.048) and the presence of large numbers of mitotic figures (p=0.029) and apoptotic bodies (p= 0.015) as independently associated with disease specific survival; although after correction for type I errors only clinical stage remained significantly associated with prognosis with patients with stage Ia disease having a significantly better outcomes [hazard ratio 0.418 (95% CI 0.20 to 0.86)]. Classification and regression tree analysis (CART) was used to further explore the data and to develop decision trees for the prognostication of early-stage lung adenocarcinoma patients. Receiver operating characteristic analysis based on 5- year survival showed a minimal improvement in the area under the curve between a model utilizing currently available clinicopathologic characteristics only [nodal status and lesion size, (area under the curve 0.704, 95% CI 0.631 to 0.777)] and one including growth pattern characteristics [area under the curve 0.725, 95% CI 0.654 to 0.796]. The greatest improvement in prognostic accuracy was observed when gene expression analysis was included in the analysis [area under the curve 0.749, 95% CI 0.673 to 0.825]; however even this showed very little impact compared to routinely used clinicopathologic variables. This analysis suggests that the recommended characterisation of lung adenocarcinoma histology is not a robust predictor of patient outcomes; even a broader model which also included indicators of tumour grade and molecular characteristics was unable to identify a model sufficiently robust to implement into clinical practice and thereby potentially alter patient treatment. Currently routinely collected clinical characteristics; including nodal status, size and clinical stage; continue to provide the most robust method of prognostication and detailed and time-consuming morphological analysis offers no significant benefit to the patient.
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