Water quality data are presented from a laboratory bench scale soil columns study, to simulate an aquifer recharge system injected with MBR wastewater effluent. This study investigates the effect of soil filtration and ozonation on the dissolved organic carbon and bacterial count in the wastewater. Flow Cytometry was used to quantify microorganisms in water samples. Other analytical tests were conducted as well, such as seven anions, fluorescence spectroscopy (FEEM), ultraviolet absorption (UV 254 nm) and dissolved organic carbon measurement (DOC). Influent in this study was injected into two identical soil columns. One of the columns was injected with treated wastewater combined with ozonation called SC1, The second column was injected with treated wastewater only and called SC2. Passing the wastewater through a deeper depth in the soil column showed a reduction in the DOC concentration. Removal of DOC was 53.7 % in SC1 and 53.8 % in SC2. UV 254 nm results demonstrated that the majority of the UV absorbing compounds were removed after the first 30 cm in the soil columns. FEEM results revealed that soil column treatment only doesn't remove humic-like and fulvic-like substances. However, combining soil column treatment with ozonation was capable of removing humic-like, fulvic-like and protein-like substances from the wastewater. Flow Cytometry results showed a bacteria removal of 52.5 %-89.5 % in SC1 which was higher than SC2 removal of 29.1 %-56.5 %.