Magister Scientiae (Biodiversity and Conservation Biology) - MSc (Biodiv and Cons Biol) / The Succulent Karoo Biome (SKB) in South Africa is widely reputed to house Earth’s greatest diversity of succulent plants. It is also famous for spectacular displays of annual flowers after good rains. The area experiences winter rainfall which infrequently exceeds 100 mm per annum but certain parts of the SKB can get 250 mm. Irrigated agriculture on a large scale was therefore not a viable option when European farmers began colonizing the land. The land was conquered from the indigenous Khoekhoe herders and San hunter-gatherers, South Africa’s first peoples. The biome underwent extreme transformation in the last 200 years following colonisation which resulted in homogenization of the landscape and extinction of many succulents thus reducing biodiversity.

Carrion decomposition is an essential ecosystem function as it is an important component of nutrient cycling. Carrion decomposition has primarily been attributed to insect consumption, with little attention given to microbial communities or their potential interactions with insects. The first objective was to use passive insect-trapping methods to assess primary colonizer communities on swine carcasses between two treatments: 1) carrion with access to insects and 2) carrion excluded from insect access for five days using exclusion cages. Despite similarities between succession patterns within each treatment, carcasses initially exposed to insects had significantly fewer insect taxa. Therefore, collections of adult insect communities associated with carrion are promising as an indication of whether or not there has been a delay in insect colonization of a resource. There has yet to be a study documenting bacterial communities during carrion decomposition. The second objective was to describe bacterial community succession and composition during decomposition in the presence and absence of naturally occurring insects. Total genomic DNA was used to identify bacterial community composition via a modified bacterial tagged encoded FLX amplicon pyrosequencing. I obtained 378,904 sequences and documented distinct bacterial community successional trajectories associated with insect access and exclusion carcasses. By the fifth day of decomposition, Proteus was the dominant (72%) bacterial genus on exclusion carcasses while Psychrobacillus (58%) and Ignatzschineria (18%) were dominant bacterial genera on insect carcasses. These data are the first to document bacterial community composition and succession on carrion. My final objective was to assess microbial community function in response to carrion insect colonization using metabolic profiling. I characterized microbial community metabolic function in the presence and absence of the primary necrophagous insects. I documented significant microbial community metabolic profile changes during active decomposition of carcasses. Mean carcass microbial community metabolic function with insect access continuously decreased over decomposition during both field seasons. Thus demonstrating microbial metabolic activity may have discriminatory power to differentiate early and late stages of decomposition. Overall, my data contributes to an understudied area of microbial research important to organic matter decomposition, forensic entomology, and microbial-insect ecological interactions.

This master’s thesis deals with the study of composting of polyhydroxybutyrate (PHB) and polylactic acid (PLA). The experimental part focuses on the composting test based on the IS/ISO 20200 standard, in which biopolymers were degraded within 8 weeks. The advantage of the composting test was the unique use of bags for polymer granules, which simplified the handling of samples. The placement of the polymers ensured an even load of compost, which simulated the landfill environment, which also made this experiment exceptional. The use of different methods of analysis ensured the investigation of the influence of compost on the degradation of polymers, but also the influence of polymers on the compost microbiome. In the compost environment all of the studied polymers degraded. After 8 weeks the weight loss of approximately 40 % was detected in PHB. Amorphous PLA degraded completely in the 5th week of experiment, while semicrystalline PLA lost approximately 70 % of its weight in 8 weeks. Using SEM images and SEC analysis, we conclude that PHB degradation was predominantly biological. Degradation of PLA samples was found to be predominantly abiotic. Analysis of compost samples revealed that the enzymatic activity of esterases increased in composts with polymers compared to compost without polymers. The effect of polymers on the microbiome in compost was analyzed using Biolog EcoPlates™. Compost with PHB showed a high ability to adapt to various substrates and microbiome expanded during composting. In the case of a sample with semicrystalline PLA, it was found that in the last week of composting, the ability of microorganisms to adapt and use substrates decreased, which indicates a possible negative effect of this polymer on compost development.

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