Les modifications du paysage engendrées par les activités humaines sont une des causes majeures du déclin de la biodiversité. En générant une perte de la connectivité fonctionnelle du paysage, elles limitent les déplacements des individus et entraînent la rupture des flux de gènes, processus clés dans le maintien et la persistance des populations. Cependant, le lien entre ces processus et la structure du paysage est encore mal compris. Dans ce contexte, nous avons conduit une étude sur la Martre des pins, une espèce a priori forestière, bien que capable de s’installer durablement dans des paysages fragmentés. A partir de l’analyse de la variabilité génétique de groupes échantillonnées sur 13 sites forestiers à l’échelle de la région Champagne-Ardenne, et du suivi des déplacements d’individus à fine échelle, en milieu continu et fragmenté, nous avons estimé la résistance du paysage aux différents déplacements, c’est-à-dire dans quelle mesure ceux-ci sont freinés ou facilités par les éléments du paysage. Nous avons mis en évidence que les déplacements sont freinés, d’une part par la présence d’une large plaine agricole, et d’autre part, par certaines infrastructures de transport. Nous avons également mis en évidence que les déplacements des martres entre les taches d’habitats sont facilités par la présence de haies et que la hauteur du couvert végétal des habitats non boisés pourrait jouer un rôle dans ces déplacements. Cette étude apporte d’importantes connaissances sur l’écologie des déplacements de la Martre des pins et souligne la nécessité de la prise en compte de la réponse des organismes dans l’établissement des futurs réseaux écologiques. / Landscape changes, generated by anthropogenic activities, are widely recognised as one of the main causes of global biodiversity decline. Leading to a loss of functional landscape connectivity, they disrupt movements and gene flow which play a primordial role for the persistence of populations. However, the relationship between these processes and landscape structure remains unclear. In this context, we studied landscape connectivity in European pine marten, a forest species present in fragmented landscapes. We evaluated landscape resistance, i.e. how landscape features impede or facilitate movements and gene flow, analysing genetic variability of groups sampled in 13 forest sites of the Champagne-Ardenne regional area, and studying individual fine-scale movements in both continuous and fragmented areas. We showed that intensive agricultural plain and certain linear infrastructures could impede movements. In addition, we showed that hedgerows facilitate movements between forest patches and we suggested that vegetation height of open habitats could play a role for these movements. This study provides important insights on movement ecology of the European pine marten and underlines the need to take into account responses of organisms in the establishment of ecological networks.

Le but de cette thèse est d’investiguer l’organisation fonctionnelle du contrôle cognitif au sein du cortex préfrontal latéral dans la schizophrénie. Chez le sujet sain, Koechlin et coll. (Science, 2003) ont montré que le cortex préfrontal latéral était structuré en une cascade de processus de contrôle allant des régions antérieures aux régions postérieures, intégrant respectivement les informations épisodiques (événements antérieurs) et contextuelles (le contexte immédiat de l’action) au choix de l’action en réponse à un stimulus externe. En utilisant le paradigme expérimental de Koechlin et coll. en IRM fonctionnelle, nous avons investigué l’architecture fonctionnelle du contrôle cognitif au sein du cortex latéral préfrontal chez 15 patients schizophrènes et 14 sujets contrôles appariés. Dans une première étude, nous avons trouvé que les patients schizophrènes présentaient un déficit sélectif du contrôle contextuel associé à une hypoactivation des régions postérieures préfrontales, expliquant la désorganisation du discours et du comportement observés chez ces patients. Par ailleurs, les patients schizophrènes hyperactivaient leurs régions rostrales du cortex préfrontal latéral pendant le contrôle des informations de nature épisodique, ce que nous avons interprété comme une tentative de compensation infructueuse des dysfonctions du contrôle contextuel. Dans une seconde étude, nous avons montré que les patients schizophrènes présentaient également une perturbation du traitement top-down des informations de nature épisodique, liée à une dysconnectivité des régions rostrales vers les régions caudales du cortex préfrontal latéral. / The goal of this thesis is to investigate the functional organization of cognitive control within the LPFC in schizophrenia. We used a model postulating that cognitive control is functionally organized within the lateral prefrontal cortex (LPFC) as a cascade of representations ranging from premotor to anterior LPFC regions according to stimuli, the present perceptual context, and the temporal episode in which stimuli occur. Using functional magnetic resonance imaging, we investigated the functional architecture of cognitive control within the LPFC in 15 schizophrenic patients and 14 matched healthy controls. In a first study, we found that immediate contextual signals insufficiently bias the caudal LPFC activity required to select the appropriate behavioral representation. This specific deficit could thus alter the internal consistency of schizophrenic patients’ behavior. To compensate for this weakening of contextual influence, schizophrenic patients may inefficiently use temporal episodic information through higher activation in rostral LPFC regions. In a second study, we showed that schizophrenic patients inappropriately process episodic information flow along a rostro-caudal axis within the LPFC. This top-down episodic control dysfunction could lead to a disruption of episodic memory that could account for the patients’ difficulties in organizing their behavior across time. All the results argue in favor of both dysfunctional specialization and integration within the LPFC in schizophrenia.

La mémoire épisodique correspond à la reviviscence consciente d'expériences personnelles ancrées dans un contexte spécifique. Ce travail de thèse porte sur l'étude des processus cognitifs et des mécanismes neuronaux du rappel épisodique chez l'Homme. Les souvenirs rappelés par les odeurs sont plus détaillés et plus émotionnels que ceux évoqués par d'autres modalités sensorielles. Ces spécificités expliquent pourquoi nous nous intéressons à l'évocation des souvenirs par des odeurs. Tout d'abord, une tâche comportementale novatrice est développée pour permettre l'étude contrôlée de la mémoire d'épisodes complexes constitués d'odeurs non familières (Quoi), localisées à des emplacements distincts (Où), d'un environnement visuel donné (Quel contexte). A l'aide de cette tâche, nous montrons que, lorsque les dimensions d'un épisode sont étroitement liées, la perception de l'odeur permet le rappel de l'ensemble du souvenir. Le rappel épisodique est essentiellement fondé sur des processus de recollection, la familiarité n'étant pas suffisante pour récupérer l'ensemble du souvenir. De plus, les odeurs associées à une émotion, quelle que soit leur valence, facilitent le rappel épisodique correct. Fonctionnellement, la mémoire épisodique est sous-tendue par un large réseau neuronal, constitué de régions typiquement impliquées dans la mémoire de laboratoire et la mémoire autobiographique. Les souvenirs corrects sont associés à un réseau neuronal différent des souvenirs incorrects, de la perception de l'odeur à la ré-expérience du souvenir. Des analyses de modularité indiquent que les interactions fonctionnelles au sein du réseau de la mémoire épisodique dépendent également de l'exactitude du souvenir. L'ensemble de ces travaux suggère que le rappel épisodique est un processus dynamique complexe, initié dès la perception des odeurs, et interdépendant d'autres systèmes de mémoire tels que les mémoires perceptive et sémantique / Episodic memory is the memory that permits the conscious re-experience of specific personal events and associated with a specific context. This doctoral research aims at investigating the cognitive processes and the neural bases of episodic retrieval in humans. Odor-evoked memories are known to be more detailed and more emotional than memories triggered by other sensorial cues. These specificities explain why we studied odor-evoked memories. First, a novel behavioral task has been designed to study in a controlled way the memory of complex episodes comprising unfamiliar odors (What), localized spatially (Where), within a visual context (Which context). From this approach, we suggest that when the binding between the episodes’ dimensions is strong, the odor perception evokes the whole episodic memory. The episodic retrieval is mainly based on recollection processes, the feeling of knowing being insufficient to induce complete memory recovery. Moreover, emotion carried by odors, whatever its valence, promote accurate episodic retrieval. Functionally, episodic memory is underpinned by a distributed network, constituted of regions typically found in laboratory and autobiographical memory approaches. Accurate memories are associated with a specific neural network, from odor perception to memory re-experience. Modularity analyses show that neural interactions within this network also depend on memory accuracy. Altogether, results of this research suggest that episodic retrieval is a dynamic and complex process, triggered by odors perception, closely linked to other memory systems such as perceptual and semantic memories

Near infrared spectroscopy (NIRS) is an emerging non-invasive optical neuro imaging technique that monitors the hemodynamic response to brain activation with ms-scale temporal resolution and sub-cm spatial resolution. The overall goal of my dissertation was to develop and apply NIRS towards investigation of neurological response to language, joint attention and planning and execution of motor skills in healthy adults. Language studies were performed to investigate the hemodynamic response, synchrony and dominance feature of the frontal and fronto-temporal cortex of healthy adults in response to language reception and expression. The mathematical model developed based on granger causality explicated the directional flow of information during the processing of language stimuli by the fronto-temporal cortex. Joint attention and planning/ execution of motor skill studies were performed to investigate the hemodynamic response, synchrony and dominance feature of the frontal cortex of healthy adults and in children (5-8 years old) with autism (for joint attention studies) and individuals with cerebral palsy (for planning/execution of motor skills studies). The joint attention studies on healthy adults showed differences in activation as well as intensity and phase dependent connectivity in the frontal cortex during joint attention in comparison to rest. The joint attention studies on typically developing children showed differences in frontal cortical activation in comparison to that in children with autism. The planning and execution of motor skills studies on healthy adults and individuals with cerebral palsy (CP) showed difference in the frontal cortical dominance, that is, bilateral and ipsilateral dominance, respectively. The planning and execution of motor skills studies also demonstrated the plastic and learning behavior of brain wherein correlation was found between the relative change in total hemoglobin in the frontal cortex and the kinematics of the activity performed by the participants. Thus, during my dissertation the NIRS neuroimaging technique was successfully implemented to investigate the neurological response of language, joint attention and planning and execution of motor skills in healthy adults as well as preliminarily on children with autism and individuals with cerebral palsy. These NIRS studies have long-term potential for the design of early stage interventions in children with autism and customized rehabilitation in individuals with cerebral palsy.

Medidas de dependência entre séries temporais são estudadas com a perspectiva de evidenciar como diferentes regiões do cérebro interagem, por meio da aplicação a sinais eletrofisiológicos. Baseado na representação auto-regressiva e espectral de séries temporais, diferentes medidas são comparadas entre si, incluindo coerência espectral e a coerência parcial direcionada, e introduz-se uma nova medida, denominada transferência parcial direcionada. As medidas são analisadas pelas propriedades de parcialização, relações diretas ou indiretas e direcionalidade temporal, e são mostradas suas relações com a correlação quadrática. Conclui-se que, entre as medidas analisadas, a coerência parcial direcionada e a transferência parcial direcionada possuem o maior número de características desejáveis, fundamentadas no conceito de causalidade de Granger. A estatística assintótica é desenvolvida para todas as medidas, incluindo intervalo de confiança e teste de hipótese nula, assim como sua implementação computacional. A aplicação a séries simuladas e a análise de dados eletrofisiológicos reais ilustram o estudo comparativo e a aplicabilidade das novas estatísticas apresentadas. / Measures of dependence between temporal series are studied in the context of revealing how different brain regions interact, through their application to electrophysiology. Based on the spectral and autoregressive model of time series, different measures are compared, including coherence and partial directed coherence, and a new measure is introduced, named partial directed transfer. The measures are analyzed through the properties of partialization, direct or indirect relations and temporal directionality, and their relation to quadratic correlation is shown. It results that among the presented measures, partial directed coherence and partial directed transfer reveal the highest number of desirable properties, being grounded on the concept of Granger causality. The asymptotic statistics for all measures are developed, including confidence intervals and null hypothesis testing, as well as their computational implementation. The application to simulated series and the analysis of electrophysiological data illustrate the comparative study and the applicability of the newly presented statistics.

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The brain; complex system people want to know about but still they are at the beginning of understanding it. There has been a lot of neuroimaging systems since developement of modern technologies and magnetic resonance imaging is one of them. In last days it isn't enough to examine only structural character of brain, the scientists are dealing with functional states more and more; the functional magnetic resonance imaging is perfectly good tool for this. There is a big amount of researches concerning individual brain regions but also a lot of them dealing with communication across the brain to clear up the causes of human behavior and functional failures. This thesis introduces the brain connectivity exploration, it uses the parcellation by anatomical atlases and it tries to use the knowledge of graph theory as one of the options to determine relations between brain centres and regions. The thesis introduces the software created for extraction of connectivity matrix resulting in graph processing and visualization.

Obesity is associated with structural and functional alterations in brain areas that are often functionally distinct and anatomically distant. This suggests that obesity is associated with differences in functional connectivity of regions distributed across the brain. However, studies addressing whole brain functional connectivity in obesity remain scarce. Here, we compared voxel-wise degree centrality and eigenvector centrality between participants with obesity (n=20) and normal-weight controls (n=21). We analyzed resting state and task-related fMRI data acquired from the same individuals. Relative to normal-weight controls, participants with obesity exhibited reduced degree centrality in the right middle frontal gyrus in the resting-state condition. During the task fMRI condition, obese participants exhibited less degree centrality in the left middle frontal gyrus and the lateral occipital cortex along with reduced eigenvector centrality in the lateral occipital cortex and occipital pole. Our results highlight the central role of the middle frontal gyrus in the pathophysiology of obesity, a structure involved in several brain circuits signaling attention, executive functions and motor functions. Additionally, our analysis suggests the existence of task-dependent reduced centrality in occipital areas; regions with a role in perceptual processes and that are profoundly modulated by attention.

Human infants have been shown to have an innate capacity to acquire their mother tongue. In recent decades, the advent of the functional magnetic resonance imaging (fMRI) technique has made it feasible to explore the neural basis underlying language acquisition and processing in children, even in newborn infants (for reviews, see Kuhl & Rivera-Gaxiola, 2008; Kuhl, 2010) . Spontaneous low-frequency (< 0.1 Hz) fluctuations (LFFs) in the resting brain have been shown to be physiologically meaningful in the seminal study (Biswal et al., 1995) . Compared to task-based fMRI, resting-state fMRI (rs-fMRI) has some unique advantages in neuroimaging research, especially in obtaining data from pediatric and clinical populations. Moreover, it enables us to characterize the functional organization of the brain in a systematic manner in the absence of explicit tasks. Among brain systems, the language network has been well investigated by analyzing LFFs in the resting brain. This thesis attempts to investigate the functional connectivity within the language network in typically developing preschool children and the covariation of this connectivity with children’s language development by using the rs-fMRI technique. The first study (see Chapter 2.1; Xiao et al., 2016a) revealed connectivity differences in language-related regions between 5-year-olds and adults, and demonstrated distinct correlation patterns between functional connections within the language network and sentence comprehension performance in children. The results showed a left fronto-temporal connection for processing syntactically more complex sentences, suggesting that this connection is already in place at age 5 when it is needed for complex sentence comprehension, even though the whole functional network is still immature. In the second study (see Chapter 2.2; Xiao et al., 2016b), sentence comprehension performance and rs-fMRI data were obtained from a cohort of children at age 5 and a one-year follow-up. This study examined the changes in functional connectivity in the developing brain and their relation to the development of language abilities. The findings showed that the development of intrinsic functional connectivity in preschool children over the course of one year is clearly observable and individual differences in this development are related to the advancement in sentence comprehension ability with age. In summary, the present thesis provides new insights into the relationship between intrinsic functional connectivity in the brain and language processing, as well as between the changes in intrinsic functional connectivity and concurrent language development in preschool children. Moreover, it allows for a better understanding of the neural mechanisms underlying language processing and the advancement of language abilities in the developing brain.

Certaines études ont montré que des odeurs subliminales – odeurs d'intensité très faible activant le système olfactif mais non perçues consciemment – peuvent impacter le comportement alimentaire. Cependant, les mécanismes sensoriels et cognitifs impliqués dans le traitement des odeurs subliminales demeurent mal connus. Ce travail de thèse avait pour but d'explorer les activations cérébrales induites par des odeurs subliminales au moyen de l'Imagerie par Résonance Magnétique fonctionnelle. Durant les acquisitions IRM, les participants sont exposés à leur insu à deux odeurs présentées à intensité subliminale puis supraliminale. Quatre réseaux cérébraux mis en évidence par Analyse en Composantes Indépendantes s’avèrent spécifiques de la condition subliminale. Ces réseaux ne sont pas propres au traitement des odeurs et semblent liés à des processus attentionnels et de contrôle exécutif. La modulation de leur activité par des odeurs subliminales apporte des éléments nouveaux pour comprendre l’impact de ces odeurs sur le comportement, et suggère des applications possibles d'utilisation de ces odeurs pour réguler le comportement alimentaire. / Some studies showed that subliminal odours – odours of very low intensity which activate the olfactory system but are not consciously perceived – can impact food behaviours. However, the sensory and cognitive mechanisms involved in subliminal odours processing remain poorly known. This work aims exploring cerebral activity induced by subliminal odours by the means of functional Magnetic Resonance Imaging. During MRI acquisitions, participants were unknowingly exposed to two odours presented at subliminal intensity and then at supraliminal intensity. Four cerebral networks highlighted by Independent Component Analysis (ICA) prove to be specific to the subliminal condition. These networks are not particular to olfactory processing and seem to be linked to attentional and executive control processes. The modulation of their activity by subliminal odours brings new elements to understand the impact of these odours on behaviour, and suggests possible applications for using these odours to regulate food behaviour.