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Thesis (M.Sc. Agriculture. (Soil Science)) -- University of Limpopo, 2022 / The constant growth experienced by the coffee industry has led to the high-volume production of coffee waste worldwide. One of the main coffee wastes is spent coffee ground (SCG), a residue obtained after the ground coffee beans are treated under pressure. The present study was aimed to investigate the utilization of SCG to amend soil physicochemical properties. This study was conducted at Greenhouse Biotechnologies Research Centre of Excellence, University of Limpopo, South Africa, where the effect of various rates of SCG concentration in volume percentage (vol%) was tested for a period of nine months. The spent coffee ground residue was collected from four restaurants at Haenertsburg, and the application rates were 0, 5, 10, 20, 30, 50 vol%. To evaluate the change in soil physicochemical properties overtime, the incubation period was divided into four test periods namely T1 was after a month, T3 after 3 months, T6 after 6 months, and T9 after 9 months. Physicochemical properties including nitrogen (N), phosphorus (P), potassium (K), magnesium (Mg), calcium (Ca), total organic carbon (TOC), cadmium (Cd), copper (Cu), nickel (Ni), zinc (Zn), and lead (Pb), pH, electrical conductivity (EC), C:N ratio, large macroaggregates (LM), small macroaggregates (sM), microaggregates (m), unaggregated silt and clay (s+c), mean weight diameter (MWD) and soil moisture content (SMC) were quantified at the end of each test period. Results revealed that the interaction between incubation periods and various SCG application rates significantly (p<0.05) increased pHw, EC, MWD, LM, base cations and significantly decreased TOC, heavy metals, SMC, m, and sM. Spent coffee ground increased pHw and EC of the soil at all application rates and reached a maximum of 7.8 units at T6 in treatment SCG-5 and 202.30 S/cm at T9 in treatment SCG-50 above the control respectively. Total organic carbon increased by 548% above control in the highest treatment (SCG-50) at T1, but, however, started declining from T3 in all treatments across the incubation period. SCG’s highest application rates (SCG-20 to SCG-50) reduced the soil Cd toxicity (threshold of >2 mg/kg), but however, also reduced the availability of micronutrients (Cu and Zn) during the incubation period. At T9, Mg, Ca, K, and P increased from mean values of 55.9 to 77.9, 40.9 to 62.2, 77.4 to 112, and 22.0 to 30.0 mg/Kg above control in treatments with high application rates. LM increased whilst sM, and m decreased across the incubation period in all treatments. MWD increased by 46% at T1 and reached its maximum of 56% at T6 in treatment SCG-50 above control. Additionally, there was a positive relationship between LM and MWD. Soil moisture content however increased to 60.26% at T1 in treatment SCG-50 and decreased from T3 across the incubation period. Spent coffee ground has the potential to be used as a liming material, a chelating agent, and for water management in semi-arid areas. It retains and cycles nutrients and improves soil structure through aggregation. However, research should be done in field conditions to access the effectiveness of this residue. / NRF

<p dir="ltr">Urban agriculture has grown in popularity in recent decades, due to its ability to provide access to healthy fruits and vegetables in urban zones, as well as its importance in fostering knowledge of agriculture within communities. However, urban agriculture may struggle with unique challenges due to its proximity to urban and industrial activities, such as food safety risks due to toxic heavy metals and metalloids which may be present in urban soils in high concentrations. Heavy metals and metalloids (HM) like arsenic, cadmium, and lead are absorbed by plants from the soil, and may accumulate in the plants’ edible tissues, which are consumed by humans. Carrot (<i>Daucus carota</i> L.), in particular, hyperaccumulates these toxic heavy metals in its edible taproots, leading to food safety risks on urban farms.</p><p dir="ltr">One potential way to help address this challenge is to breed carrot varieties with low uptake of HM. In recent years, researchers have identified lines with high and low uptake in greenhouse trials and single location breeding nurseries. However, to be viable, these lines must consistently vary in HM across sites despite differences in environmental and management factors that can also greatly influence HM bioavailability and uptake. Moreover, screening for differences in HM uptake is time-consuming and expensive, and breeders need new tools to select among segregating breeding populations. By using on-farm participatory research as well as advanced phenotyping technologies, we investigate the viability of breeding carrots for HM uptake and the potential of new tools to advance these efforts in order to mitigate the risks on urban farms.</p><p dir="ltr">In the summers of 2021 and 2022, participatory on-farm trials were conducted to determine the HM risks on Indiana urban farms and to investigate the consistency of differences in HM uptake between carrot breeding lines taken from breeding trials (Chapter 2). Results of these trials indicated that while carrot genotype had an effect, there was still significant variability in carrot uptake of arsenic, cadmium and lead between farm sites and years. Results indicated significant differences between site-years, and carrot HM concentrations that correlated strongly with soil concentrations for that particular element. However, there were some site-years with low soil HM content and other soil factors expected to reduce uptake such as pH and phytoavailable zinc concentrations (such as site-year H), that had high carrot HM content. There were significant differences in carrot cadmium (Cd) and arsenic (As) content between carrot breeding lines. For instance, breeding line 3271 had a high As average concentration but low Cd average concentration, while breeding lines 6220 and 2327 had low As and high Cd concentrations. We identify the possibility of other mediating factors, such as uptake of antagonistic micronutrients, or microbe-assisted HM uptake and amelioration that need further attention.</p><p dir="ltr">In the fall of 2022, a study was conducted to investigate the possibility of using phenotyping technologies such as RGB and hyperspectral imaging to detect Cd stress in carrot and attempt to predict uptake (Chapter 3). RGB (red green blue) is a digital color model in which cameras can capture important visual cues compiled from information about each pixel. Hyperspectral imaging uses cameras to capture wavelengths beyond the visible spectrum, which can detect plant stress indicators like increased anthocyanin content for specific environmental stresses. Results of this trial were useful, with some time points and indices noting differences between carrot lines. For instance, RGB factors hue and fluorescence as well as hyperspectral reflectance plots and vegetative indices swirNDVI and ANTH were the most diagnostic. Breeding lines 6636 and 8503 showed the greatest separation between Cd treated and control carrots in imaging indices. However, further studies will be needed to optimize this approach for breeding programs.</p><p dir="ltr">This research demonstrates that growing carrots on most urban farms in Indiana is safe. The studies also provide further evidence that it will be possible to help lower food safety risks by selecting carrot varieties with low HM uptake, and phenotyping can help to advance these efforts. At the same time, new research to understand how soil factors such as microbiomes influence HM bioavailability and uptake on urban farms are also needed to further reduce potential risks. In the meantime, farmers should continue to test their soil for HM and take appropriate actions to reduce risks such as using raised beds and soil amendments that can bind metals like biochar. Consumers should also continue to wash and peel their carrots before consumption, as well as consume a balanced diet with a diverse set of vegetables and other crops.</p>