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  • About
  • The Global ETD Search service is a free service for researchers to find electronic theses and dissertations. This service is provided by the Networked Digital Library of Theses and Dissertations.
    Our metadata is collected from universities around the world. If you manage a university/consortium/country archive and want to be added, details can be found on the NDLTD website.
11

Speciation genomics : A perspective from vertebrate systems

Vijay, Nagarjun January 2016 (has links)
Species are vital entities in biology. Species are generally considered to be discrete entities, consisting of a group of (usually interbreeding) individuals that are similar in phenotype and genetic composition, yet differ in significant ways from other species. The study of speciation has focussed on understanding general evolutionary mechanisms involved in the accumulation of differences both at the genetic and phenotypic level. In this thesis, I investigate incipient speciation, an early stage of divergence towards evolutionary independence in closely related natural populations. I make ample use of recent advances in sequencing technology that allow 1) characterizing phenotypic divergence at the level of the transcriptome and 2) delineate patterns of genetic variation at genome-scale from which processes are inferred by using principles of population genetic theory. In the first paper, we assembled a draft genome of the hooded crow and investigated population differentiation across a famous European hybrid zone. Comparing sequence differentiation peaks between and within the colour morphs, we could identify regions of the genome that show differentiation only between colour morphs and that could be related to gene expression profiles of the melanogenesis pathway coding for colour differences. The second paper expands on the first paper in that it includes crow population samples from across the entire Palaearctic distribution spanning two additional zones of contact between colour morphs. The results suggest that regions associated with selection against gene flow between colour morphs were largely idiosyncratic to each contact zone and emerged against a background of conserved 'islands of differentiation' due to shared linked selection. The third paper focusses on five killer whale ecotypes with distinct feeding and habitat specific adaptations. Differing levels of sequence differentiation between these ecotypes places them along a speciation continuum and provides a unique temporal cross-section of the speciation process. Using genome scans we identified regions of the genome that show ecotype specific differentiation patterns which might contain candidate genes involved in adaptation. In the fourth and final paper, I assumed a comparative genomic perspective to the problem of heterogeneous genomic differentiation during population divergence. The relatively high correlations in the diversity landscapes as well as differentiation patterns between crow, flycatcher and Darwin's Finch populations is best explained by conservation in broad-scale recombination rate and/or  association with telomeres and centromeres conducive to shared, linked selection.
12

Morfologie spermií v sekundární kontaktní zóně slavíka obecného a slavíka tmavého / Sperm morphology in the secondary contact zone of Common Nightingale and Thrush Nightingale

Opletalová, Kamila January 2017 (has links)
The male gametes (sperms) are under strong sexual selection and are therefore very diverse in their morphology and often differ even amongst closely related species. Sperms are thus assumed to play very important role in reproductive isolation between species, due to their fast evolution in morphology. In my master thesis, I have studied the possible role of sperm morphology divergence in reproductive isolation in two sister species of passerine birds, the common nightingale (Luscinia megarhynchos) and the thrush nightingale (L. luscinia). The areas of these species overlap in secondary contact zone running across central and Eastern Europe, where they occasionally hybridize. I have compared sperm morphology of males of both species originating in allopatric and sympatric localities as well as interspecies hybrids. The results showed significant differences in total sperm length which is approximately 20 % longer in the common nightingale. That is caused by great interspecies divergence in midpiece (containing mitochondria) length. Interspecific hybrids showed sperms with intermediate length but despite expectations completely morphologically normal. This outcome corresponds with observed fertility in F1 hybrid males. What I consider to be an essential finding is a significant divergence in head...
13

Chromosom Y v hybridní zóně myší / Y chromosome in the mouse hybrid zone

Rubík, Pavel January 2011 (has links)
The contact zone between subspecies of house mouse Mus musculus musculus and Mus musculus domesticus is one of the most intensively studied hybrid zones. It is also due to extensive introgression of the Y chromosome of M. m. musculus subspecies to the genetic background of M. m. domesticus. One theory of the origin of the introgression explains it by intragenomic conflict between the sexes. With a set of variable microsatellite markers on the Y chromosome, I have examined the validity of this theory by simple approaches revealing the history of the introgression area. It turned out that overly big variability of our markers makes the revelation of this theory impossible. Our markers have been found suitable for use in the analysis of population structure of house mouse. Thanks to them, we can identify migrants between localities and estimate the level of closeness of the population structure in relation to migrants from the neighborhood. Populations in our analysis proved to be relatively closed and resistant to the influx of migrants. Despite the conclusions of previous research where the dispersion of males ran up to one kilometer, I have discovered a relatively large number of migrations to a distance of thirty kilometers. Keywords Mus musculus musculus, Mus musculus domesticus, Y chromosome,...
14

Evoluční význam smíšených zpěvů v kontaktní zóně dvou druhů slavíků / Evolutionary importance of mixed singing in two species of nightingales

Kohoutová, Hana January 2017 (has links)
Singing is important for communication in birds. Some species of birds copy singing from other species. This heterospecific copying of singing is common especially in closely related bird species, and is usually called mixed singing in such cases. Mixed singing is often asymmetric, when only one species of the pair copies a song of the congener. The meaning of mixed singing is not well explained yet. The most common mechanism is probably an error during the learning phase of singing, but in some cases mixed singing can be adaptive. In my master's thesis I deal with the evolutionary meaning of mixed singing in two closely related passerine species - Common nightingale (Luscinia megarhynchos) and Thrush nightingale (Luscinia luscinia). These species co-occur in secondary contact zone in central and eastern part of Europe. Only Thrush nightingale which is larger and probably a more dominant species, exhibits mixed singing. In playback experiments in Common nightingale I studied a possible adaptive meaning of mixed singing in relation to interspecific communication. I tested the differences in behavioural and vocal response of Common nightingales to three types of stimuli: pure singing of Common nightingale, pure singing of Thrush nightingale and mixed singing of Thrush nightingale. The tested males...
15

Barrières au flux génique en Méditerranée Occidentale : étude de la différenciation génétique chez deux mollusques marins, Mytilus galloprovincialis & Stramonita haemastoma, / Barriers to gene flow in the Western Mediterranean basin : Study of the genetic differentiation in two marine molluscs, Mytilus galloprovincialis & Stramonita haemastoma,

El Ayari, Tahani 01 December 2015 (has links)
La génétique des populations a révélé que la diversité génétique des espèces marines était très souvent distribuée de façon discrète dans l’espace, en mosaïque de patchs populationnels génétiquement homogènes délimités par des discontinuités appelées barrière au flux génique. L’objectif de cette thèse était de contribuer à mieux comprendre les processus expliquant l’origine, le maintien et la position des barrières génétiques au niveau de la zone de transition entre l’Atlantique et la Méditerranée. Dans un premier temps a été étudiée la structure génétique de la moule Mytilus galloprovincialis. Contrairement au cline abrupt et étroit reporté en Espagne, nous avons découvert en Algérie une vaste zone hybride mosaïque sur 600 km de côtes à l'Est du front océanique Almeria-Oran. Dans un deuxième temps a été menée une étude de la structure génétique du gastéropode marin Stramonita haemastoma. Nous avons découvert deux lignées cryptiques différentiellement fixées pour des haplogroupes mitochondriaux, et différenciées sur 3 marqueurs microsatellites développés dans cette thèse. La distribution spatiale en mosaïque est étonnante avec un patch de la lignée atlantique enclavé au nord de la Méditerranée occidentale et bordé par une zone hybride au sud dans la région de Valence. Ces deux études mettent en avant l’importance de l’isolement reproductif intrinsèque dans l’explication de la distribution mosaïque de la diversité génétique marine. Bien que les frontières entre patchs correspondent à des barrières physiques à la dispersion ou à des écotones, l’hydrographie et l’environnement n’expliquent sans doute que la position des discontinuités génétiques mais ni leur origine ni leur maintien. / Population genetics has revealed the genetic diversity of marine species is often subdivided into a mosaic of discrete patches, within which populations are genetically homogeneous, delineated by discontinuities called barriers to gene flow. The aim of this thesis was to contribute to better understand the processes explaining the origin, maintenance and location of genetic barriers at the Atlantic/Mediterranean transition zone. First, we studied the genetic structure of the mussel Mytilus galloprovincialis. In contrast to the abrupt narrow cline reported in Spain, we discovered along the Algerian coastline a 600 km wide mosaic hybrid zone eastward of the Almeria-Oran oceanic front. Second, we studied the genetic structure of a marine gastropod Stramonita haemastoma. We discovered two cryptic lineages differentially fixed for alternative mitochondrial haplogroups, and differentiated at three microsatellite markers developed in this PhD work. Surprisingly, the spatial distribution proved to be an unusual mosaic with a patch of the Atlantic lineage enclaved in the north of the Western Mediterranean Sea, bordered in the South by a hybrid zone in eastern Spain around Valencia. These two studies highlight the importance of intrinsic reproductive isolation in explaining the mosaic distribution of the marine genetic diversity. Although boundaries between patches coincide with physical barriers to dispersal or ecotones, hydrography and environment mainly explain the position of the genetic discontinuities but neither their origin nor their maintenance.
16

Speciation - What Can be Learned from a Flycatcher Hybrid Zone?

Wiley, Chris January 2006 (has links)
<p>Studies of hybrid zones offer important insights into the process of speciation. Much of the knowledge to be gained is dependent on an accurate estimation of the strength of pre- and post-zygotic isolation between hybridizing taxa. My results demonstrate that hybridization can variously affect different components of fitness. In Ficedula flycatchers, late-breeding females may directly benefit from pairing with a heterospecific male by gaining access to superior territories. The hybrid offspring possess an immune system that is as equally well functioning as in the parental species (the collared, F. albicollis, and pied flycatcher, F. hypoleuca). However, I found that a severe reduction in fertility persists for at least three generations after the actual hybridization event. Combining all information about the reproductive success of hybridizing individuals and their descendents revealed that postzygotic isolation between flycatchers is very strong; hybridizing individuals leave almost no descendents. This thesis presents one of few comprehensive summaries of the selection for/against assortative mating in a natural hybrid zone. These findings suggest a central role for intrinsic postzygotic isolation as a reproductive barrier separating newly evolved bird species, and contrast previous suggestions that postmating isolation is the slowest of the reproductive barriers to evolve in birds.</p><p>Despite this strong selection against hybridization, pre-mating isolation is incomplete. Hybridization often results from females lacking conspecific partners, but appears to be also caused by errors in species recognition. Much of this error probably reflects the short period of time that pied flycatchers on Gotland and Öland have been in sympatry. Compared to collared flycatchers, pied flycatchers are poorer able to discriminate between conspecific and heterospecific song, and male pied flycatchers more often falsely signal their own identity through heterospecific song copying. However, despite colonising the study site from other sympatric populations and having very little gene flow from allopatry, collared flycatchers also possess traits (e.g. delayed plumage maturation) that increase their hybridization risk. Once pre-mating isolation is strong, the rarity of hybridization probably inhibits further selection against traits promoting interspecific mating, especially when such traits may be beneficial in other contexts. This thesis highlights complex interactions between factors affecting hybridization rate that would not be detected if such a study were not field-based. Furthermore, it showcases likely examples in nature of a number of theoretical objections to the evolution of pre-mating barriers between populations living in sympatry.</p>
17

Speciation - What Can be Learned from a Flycatcher Hybrid Zone?

Wiley, Chris January 2006 (has links)
Studies of hybrid zones offer important insights into the process of speciation. Much of the knowledge to be gained is dependent on an accurate estimation of the strength of pre- and post-zygotic isolation between hybridizing taxa. My results demonstrate that hybridization can variously affect different components of fitness. In Ficedula flycatchers, late-breeding females may directly benefit from pairing with a heterospecific male by gaining access to superior territories. The hybrid offspring possess an immune system that is as equally well functioning as in the parental species (the collared, F. albicollis, and pied flycatcher, F. hypoleuca). However, I found that a severe reduction in fertility persists for at least three generations after the actual hybridization event. Combining all information about the reproductive success of hybridizing individuals and their descendents revealed that postzygotic isolation between flycatchers is very strong; hybridizing individuals leave almost no descendents. This thesis presents one of few comprehensive summaries of the selection for/against assortative mating in a natural hybrid zone. These findings suggest a central role for intrinsic postzygotic isolation as a reproductive barrier separating newly evolved bird species, and contrast previous suggestions that postmating isolation is the slowest of the reproductive barriers to evolve in birds. Despite this strong selection against hybridization, pre-mating isolation is incomplete. Hybridization often results from females lacking conspecific partners, but appears to be also caused by errors in species recognition. Much of this error probably reflects the short period of time that pied flycatchers on Gotland and Öland have been in sympatry. Compared to collared flycatchers, pied flycatchers are poorer able to discriminate between conspecific and heterospecific song, and male pied flycatchers more often falsely signal their own identity through heterospecific song copying. However, despite colonising the study site from other sympatric populations and having very little gene flow from allopatry, collared flycatchers also possess traits (e.g. delayed plumage maturation) that increase their hybridization risk. Once pre-mating isolation is strong, the rarity of hybridization probably inhibits further selection against traits promoting interspecific mating, especially when such traits may be beneficial in other contexts. This thesis highlights complex interactions between factors affecting hybridization rate that would not be detected if such a study were not field-based. Furthermore, it showcases likely examples in nature of a number of theoretical objections to the evolution of pre-mating barriers between populations living in sympatry.
18

Bases génétiques de la différenciation adaptative en milieu anthropisé chez Macoma balthica, un bivalve marin à fort flux génique / Genetic basis of the adaptive differentiation in anthropized environment in Macoma balthica, an high gene flow marine bivalve

Saunier, Alice 11 December 2015 (has links)
Dans un contexte environnemental anthropisé, fragmenté et soumis à un changement climatique rapide, l’appréhension des processus d'adaptation locale des organismes marins par l'étude de zones de contact entre taxa proches constitue une approche privilégiée. Dans ces zones, des génotypes hybrides persistent malgré un état de maladaptation liée à des incompatibilités génétiques endogènes et/ou des barrières exogènes. L'histoire biogéographique complexe de la telline baltique Macoma balthica fait émerger quatre zones hybrides européennes, dont l'une, localisée autour de la Pointe Finistère (France), est le résultat d’un contact entre deux stocks génétiques ayant divergé en allopatrie. Ces divergences sont susceptibles de rompre la coadaptation entre génomes nucléaire et mitochondrial en raison de l'émergence d'incompatibilités mitonucléaires (MNIs). Ainsi, les sous-unités protéiques des cinq complexes de la chaine OXPHO sont codées à la fois par des gènes nucléaires et mitochondriaux, et une coévolution inter-génomique étroite est requise pour maintenir la production énergétique cellulaire. De précédentes données de transcriptomique dévoilent de probables MNIs chez M. balthica au niveau des complexes respiratoires I et V. Afin d’apporter des éléments de compréhension aux mécanismes de maintien des zones hybrides dans un contexte de pression anthropique, le présent travail se propose de tester l'hypothèse de putatives MNIs dans cette zone de contact. Pour cela, (i) six mitogénomes correspondant à cinq lignées haplotypiques divergentes en Europe ont été séquencés et l'architecture génomique a été étudiée conjointement à une cartographie des mutations des 13 gènes mitochondriaux, (ii) le niveau de transcription de 5 gènes nucléaires et 8 gènes mitochondriaux (complexe I à V) des individus hybrides a été comparé à celui des lignées parentales après détermination du statut d'hybridation de chaque individu (six populations françaises). A défaut d'apporter des éléments de réponses concrets quant à l'existence de MNIs chez M. balthica, et ses répercussions évolutives en terme de dépression d'hybridation, ce travail constitue un tremplin vers une étude approfondie de la zone hybride française en développant de nouveaux outils moléculaires, et de solides techniques expérimentales pour la conduite de futurs croisements artificiels. / In the anthropized, fragmented environmental context subject to rapid climate change, understand local adaptation processes of marine organisms by studying the contact zones between close taxa is a preferred approach. In these areas, hybrid genotypes persist despite a maladaptive state related to endogenous genetic incompatibilities and/or exogenous barrier. The complex biogeographic history of the Baltic tellin Macoma balthica leads to emergence of several European hybrid zones, one of which, located around the Pointe Finistère (France), is the result of the confluence of two genetic stocks that have diverged in allopatric. These divergences may have lead to the co-adaptation breakdown between nuclear and mitochondrial genomes due to the emergence of mito-nuclear incompatibilities (MNIs). Thus, the different protein subunits of the five OXPHO chain complexes are encoded by both nuclear and mitochondrial genes, and a tight inter-genomic coevolution is required to maintain the cellular energy production. Recent transcriptomic data unveil the existence of underlying MNIs in M. balthica, bearing by the respiratory complexes I and V. In order to provide some understanding clues of mechanisms in hybrid zone's maintenance in the context of human pressure, the present work aims to test the assumption of putative MNIs in this area. For this purpose, (i) six mitogenomes corresponding to five divergent haplotype lineages in Europe were sequenced and the genomic architecture has been studied jointly to a mapping mutation of the 13 mitochondrial genes, (ii) the level of transcription of 5 nuclear and 8 mitochondrial genes (complex I to V) of hybrid individuals was compared to the parental lineages after identification of the hybrid status of each individual (six french populations). For the lack of bringing concrete answers concerning the existence of MNIs in M. balthica, and its evolutionary effects in term of hybrid breakdown, this work is a springboard for a comprehensive study of the French hybrid zone by developing new molecular tools, and stable experimental technics for the realisation of future artificial crosses.

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