As células-tronco mesenquimais são células multipotentes caracterizadas pela capacidade de autorrenovação e diferenciação. Os oxisteróis abrangem um grande grupo heterogêneo derivado do colesterol pela da oxidação enzimática e não enzimática. Os efeitos dos oxisteróis no processo de morte celular, incluindo citotoxicidade e indução de apoptose, foram descritos em diversas linhagens celulares. No entanto, os efeitos dos oxisteróis são pouco conhecidos nas células-tronco mesenquimais. O 7-cetocolesterol (7-KC), um dos mais importantes oxisteróis, foi mostrado ser citotóxico em células-tronco mesenquimais de tecido adiposo. Sendo assim, este estudo descreve os efeitos citotóxicos de curta duração (24 horas) dos oxisteróis colestane-3alfa-5beta-6alfa-triol, 3,5 colestane-7-ona, (3alfa-5beta-6alfa)-colestane-3,6-diol,7-oxocolesterol-5-en-3-beta-il acetato e 5beta-6beta epoxi-colesterol em células-tronco derivadas de tecido adiposo. Os oxisteróis 3,5 colestane-7-ona e 7-oxocolesterol-5-en-3-beta-il acetato não promoveram morte celular e nem afetaram a proliferação celular. Os outros oxisteróis promoveram apoptose, necrose e autofagia, dependendo do tipo de oxisterol e da concentração. O colestane-3alfa-5beta-6alfa-triol foi o mais efetivo. A inibição da proliferação também foi promovida pelos oxisteróis, porém não foi observada alteração no ciclo celular / Mesenchymal stem cells (MSCs) are multipotent cells characterized by self-renewal and cellular differentiation capabilities. Oxysterols comprise a very heterogeneous group derived from cholesterol through enzymatic and non-enzymatic oxidation. Potent effects in cell death processes, including cytoxicity and apoptosis induction, were described in several cell lines. Very little is known about the effects of oxysterols in MSCs. 7-ketocholesterol (7-KC), one of the most important oxysterols, was shown to be cytotoxic to human adipose tissue-derived MSCs. Here, we describe the short-term (24 h) cytotoxic effects of cholestan-3alpha-5beta-6alpha-triol, 3,5 cholestan-7-one, (3alpha-5beta-6alpha)-cholestane-3,6-diol,7-oxocholest-5-en-3-beta-yl acetate, and 5beta-6beta epoxy-cholesterol, on MSCs derived from human adipose tissue. 3,5 cholestan-7-one and 7-oxocholest-5-en-3-beta-yl acetate did not promoted cell death or affect cell proliferation. The other oxysterols led to a complex mode of cell death that could include apoptosis, necrosis and autophagy, depending on the type of oxysterol and concentration. Cholestan-3alpha-5beta-6alpha-triol was the most effective. Inhibition of proliferation was also promoted by these oxysterols, but no changes in cell cycle were observed

Le but de ce projet de thèse a été d’établir une nouvelle méthodologie permettant d’immobiliser des espèces paramagnétiques sur des silices mésoporeuses afin d’optimiser le processus de polarisation dynamique nucléaire. Pour ce faire, différentes matrices polarisantes, nommées HYPSO pour « HYbrid Polarizing SOlids », ont été préparées par un procédé sol-gel. Ces solides sont hautement poreux et des espèces paramagnétiques y sont liées de manière covalente. Un des avantages notable de cette méthode consiste à s’affranchir « d’agent glaçant » en raison d’une répartition homogène et aléatoire des radicaux à la surface des matériaux. Deux types de matrices polarisantes, HYPSO 2 et HYPSO 3 ont révélé des polarisations distinctes : P(1H)= 50% et P(1H)= 63%. Cette différence a été expliquée par l’influence de la matrice de silice qui offre de meilleures performances lorsque sa porosité est interconnectée dans les 3 dimensions de l’espace. Suite à ces résultats, de nouveaux matériaux (HYPSO 5) ont été préparés. L’influence de la taille des pores ainsi que celle des grains de silice sur la polarisation ont été étudiées. Des performances remarquables : P(1H)= 99% (± 5%) et P(13C)= 51 % ont été enregistrées, témoignant ainsi de l’efficacité de cette nouvelle méthode. De plus, les premières images IRM utilisant les HYPSO 5 en tant que matrices polarisantes ont été obtenues après hyperpolarisation d’une solution d’acétate de sodium de référence. Enfin, nous nous sommes intéressés à une nouvelle formulation basée sur des xérogels de silice. Des résultats préliminaires ont montré de bonnes polarisations avec la capacité d’utiliser un même monolithe pour polariser différents liquides / The goal of this PhD project was to develop a new methodology allowing to immobilize paramagnetic species on mesoporous silica in order to optimize the dynamic nuclear polarization process. For this purpose, different polarizing matrices, denoted as HYPSO for “HYbrid Polarizing SOlids”, were prepared through a sol-gel process. These solids are highly porous and paramagnetic species are covalently attached onto the surface. One of the noticeable benefit of this method lies in the possibility to remove the “glass forming agent” because of a homogeneous and random repartition of the radicals onto the surface of these materials. Two types of polarizing matrices, HYPSO 2 and HYPSO 3 gave distinct polarizations: P(1H)= 50% and P(1H)= 63%. This difference was explained by the influence of the silica matrix which provides better performances when its porosity is interconnected in the 3 dimensions of the space. Following these results, new materials (HYPSO 5) were prepared. The influence of the pore sizes as well as those of the silica grains on the polarization were studied. Remarkable performances: P(1H)= 99% (± 5%) et P(13C)= 51 % were recorded, thereby demonstrating the efficiency of this new method. Moreover, the first MRI pictures using HYPSO 5 as polarizing matrices were obtained after hyperpolarization of a sodium acetate solution. Finally, we were interested to a new formulation based on silica xerogels. Preliminaries results showed good polarizations and the ability to use only one monolith to polarize different liquids

L'Imagerie par Résonance Magnétique (IRM) est une technique d'imagerie médicale largement répandue dans les milieux hospitaliers pour le diagnostic de pathologies. Elle repose classiquement sur la détection du proton (IRM 1H) et permet de visualiser des tissus en profondeur avec une très bonne résolution temporelle et spatiale. Cependant, cette méthode souffre encore de sa faible sensibilité. Une des solutions consiste en l'introduction et la détection de xénon hyperpolarisé. En effet, le xénon est un gaz non toxique, très sensible à son environnement chimique et adapté pour l’IRM. Cependant, il n'est spécifique d'aucun récepteur biologique et nécessite des molécules particulièrement adaptées pour son encapsulation. La détection de cibles spécifiques se fait par des biosondes constituées de molécules cages fonctionnalisées par une antenne de reconnaissance d'un récepteur spécifique. Le xénon vient s'encapsuler dans cette molécule hôte et permet la localisation de la cible biologique. Parmi les molécules cages répertoriées dans la littérature, les cryptophanes présentent la plus forte affinité connue pour le xénon et sont donc les plus prometteuses. Les cryptophanes sont des molécules cages constituées de deux unités de type cyclotribenzylène reliées entre elles par trois chaînes pontantes. Ils ont été synthétisés pour la première fois par l'équipe d'A. Collet au Collège de France au début des années 1980. L'objectif de cette thèse a été de synthétiser et de fonctionnaliser de nouveaux cryptophanes. / Non-invasive proton magnetic resonance imaging (1H MRI) is a powerful clinical tool for the detection of numerous diseases. Although MRI contrast agents are often used to improve diagnostic specificity, this technique has limited applications in molecular imaging because of its inherently low sensitivity when compared to nuclear medicine or fluorescence imaging. Laser-polarized 129Xe NMR spectroscopy is a promising tool to circumvent sensitivity limitations. Indeed, optical pumping increases the nuclear spin polarization of xenon by several orders of magnitude (104 to 105), thus small amounts of gas dissolved in biological tissues (blood, lungs…) can be rapidly detected with an excellent signal-to-noise ratio. In addition, the high polarizability of the xenon electron cloud, which induces a very high sensitivity to its environment, makes this nucleus very attractive for molecular imaging. Detection of biomolecules can be achieved by biosensors, which encapsulate xenon atoms in molecular cages that have been functionalized to bind the desired biological target. Cage molecules such as cryptophanes have high affinity for xenon and thus appear as ideal candidates for its encapsulation. During this PhD thesis we worked on the synthesis and the functionalization of new cryptophanes.

Under the electric dipole approximation, second harmonic of the incident light is scattered by a collection of randomly oriented molecular dipoles in solution due to instantaneous orientational fluctuation which is directional. If two such dipoles are correlated in space through intermolecular or other interactions, the intensity of the second harmonic scattered light (SHSL) will be related to the extent of such interactions. If two dipoles are arranged in a particular geometry by design, the geometry will determine the intensity of the SHSL. If a molecule has no dipole moment, the intensity of the SHSL will be less and is only allowed by higher order electric multipoles. If two such zero-dipole molecules interact with each other and transfer some amount of electronic charge from one to the other, the induced dipole moment will give rise to an enhanced SHSL. However, along with the direction of the dipole moment from the donor to the acceptor, the actual geometry of such molecular dimer/complex should also play an important role to determine the nature of the SHSL response. If all the isotropic nonzero components of first hyperpolarizability (β) are taken into account, from the measurement of β and related quantities such as depolarization ratios, in solution it should be possible to derive information about the geometry of the dimer/complex. This is precisely the motivation behind this thesis. Chapter 1 gives a brief introduction of 1:1 charge transfer (CT) complexes between a donor and an acceptor and their importance in chemistry. It also contains an introduction to nonlinear optics, various spectroscopic techniques to characterize CT complexes, etc. The motivation of extracting the geometry of such complexes from hyper-Rayleigh scattering (HRS) measurements in solution is presented in this chapter. In Chapter 2, all the experimental details of the unpolarized and polarization resolved HRS measurements at various excitation wavelengths have been described. Generation of infrared wavelengths (1543 nm and 1907 nm) using stimulated Raman scattering in gases have also been discussed. In Chapter 3, the first hyperpolarizability (βHRS) for two series of 1:1 molecular complexes between methyl substituted benzene donors with tetrachloro-p-benzoquinone (CHL) and dicyanodichloro-p-benzoquinone (DDQ) acceptors in solution at 1543 nm have been presented. Enhancement of βHRS due to charge transfer from the donor to the acceptor molecule which was predicted theoretically has been verified. Using linearly (electric field vector along X direction) and circularly polarized incident light, respectively, two macroscopic depolarization ratios D = I2ω,X,X/I2ω,Z,X and D' = I2ω,X,C/I2ω,Z,C in the laboratory fixed XYZ frame by detecting the SHSL in a polarization resolved fashion have been measured. The experimentally obtained first hyperpolarizability (βHRS), D and D' values, are then matched with the theoretically calculated values from single and double configuration interaction calculations using the Zerner’s intermediate neglect of differential overlap and the self-consistent reaction field (ZINDO–SDCI– SCRF) approach by adjusting the geometrical parameters. It has been found that in most of the CT complexes studied here, there exists a significant twist in the equilibrium geometry at room temperature which is not a simple slipped parallel geometry as was believed. In chapter 4, the βHRS, D and D' values of 1:1 pyridine (PY)-chloranil (CHL) complex at 1064 nm have been described. Previous theoretical studies have shown that there is a tilt angle of 77.9 degree in the gas phase PY-CHL complex. In this chapter, this prediction about the geometry of 1:1 PY-CHL complex has been probed. The experimentally found βHRS, D and D' are matched well with theoretically calculated values, using ZINDO–SDCI–SCRF, for a cofacial geometry of PY-CHL complex in solution indicating that the solution geometry is different from the gas phase geometry. In Chapter 5, the βHRS, D and D' for a series of 1:1 complexes of tropyliumtetrafluoroborate and methyl-substituted benzenes in solution at 1064 nm have been reported. The measured D and D' values vary from 1.36 to 1.46 and 1.62 to 1.72, respectively and are much lower than the values expected from a typical sandwich or a T-shaped geometry. The lowering in D and D' indicates that these complexes have higher symmetry than C2v. The value of D close to 1.5 indicates there is a significant octupolar contribution in such complexes. In order to probe it further, βHRS, D and D' were computed using the ZINDO-SDCI-SCRF technique in the presence of BF4-anion. By arranging the three BF4-ions in a C3 symmetry around the complex in such a way that electrical neutrality is maintained, the computed values are brought to agreement with experiments. This unprecedented influence of the anion on the HRS, D and D' values of these complexes are discussed in this chapter. In Chapter 6, the effect of dipolar interactions, within a multichromophoric system, on the second order nonlinear optical properties have been studied. It has been found that the βHRS response of the multichromophoric system is always larger than expected for uncorrelated chromophores demonstrating that the dipole moment of individual chromophores are not merely additive within the multichromophoric system but contribute cooperatively to the SHSL signal. Also the relative orientation and nature of the chromophores and the angle of interaction between them alter the HRS values. Chapter 7 is the concluding chapter in which all the work done in the thesis has been summarized and future direction has been proposed.

Abstract This thesis reports simulations of direct observables in electron and nuclear spin relaxation experiments in an example paramagnetic system, as well as polarization transfer occurring in a spin-exchange optical pumping (SEOP) experiment. Studies of paramagnetic relaxation are important, e.g., in the development of agents used for enhanced contrast in magnetic resonance imaging. SEOP is used to produce hyperpolarized noble gases, which are then used to, e.g., enhance sensitivity in structural studies of matter with nuclear magnetic resonance. Presently the theory, available software and hardware for such computational modeling have reached a state in which quantitative reproduction of the experimentally observed magnetization decay is possible from first principles. The present multiscale computations are carried out from first principles combining molecular dynamics simulations of atomistic motion and quantum-chemical electronic structure calculations of the spin interaction parameters that enter the effective spin Hamiltonian. A time series of the spin Hamiltonian is then explicitly used to propagate spin dynamics in the system, and dynamical time constants of the magnetization are obtained through ensemble averaging. The complete decay of electron spin magnetization could be followed directly within the duration of the simulation, whereas the nuclear spin relaxation rates were extracted using Kubo’s theory regarding generalized cumulant expansion and stochastic processes. The extracted electron and nuclear spin relaxation rates for the chosen prototypic system, the aqueous solution of Ni²⁺, are in quantitative and semi-quantitative agreement, respectively, with the available experimental results. The simulations of polarization transfer corroborate the empirical observations on the importance of van der Waals complexes and binary collisions in the spin-exchange process. Long van der Waals complexes represent the overwhelmingly most significant kind of individual events, but the short binary collisions can also give a relatively important contribution due to their vast abundance. This thesis represents a first study in which first principles-calculated trajectories of individual events could be followed. The simulations reported in this thesis were run without any empirical parametrization and thus represent a significant step in first-principles computational modeling of magnetization dynamics.

As células-tronco mesenquimais são células multipotentes caracterizadas pela capacidade de autorrenovação e diferenciação. Os oxisteróis abrangem um grande grupo heterogêneo derivado do colesterol pela da oxidação enzimática e não enzimática. Os efeitos dos oxisteróis no processo de morte celular, incluindo citotoxicidade e indução de apoptose, foram descritos em diversas linhagens celulares. No entanto, os efeitos dos oxisteróis são pouco conhecidos nas células-tronco mesenquimais. O 7-cetocolesterol (7-KC), um dos mais importantes oxisteróis, foi mostrado ser citotóxico em células-tronco mesenquimais de tecido adiposo. Sendo assim, este estudo descreve os efeitos citotóxicos de curta duração (24 horas) dos oxisteróis colestane-3alfa-5beta-6alfa-triol, 3,5 colestane-7-ona, (3alfa-5beta-6alfa)-colestane-3,6-diol,7-oxocolesterol-5-en-3-beta-il acetato e 5beta-6beta epoxi-colesterol em células-tronco derivadas de tecido adiposo. Os oxisteróis 3,5 colestane-7-ona e 7-oxocolesterol-5-en-3-beta-il acetato não promoveram morte celular e nem afetaram a proliferação celular. Os outros oxisteróis promoveram apoptose, necrose e autofagia, dependendo do tipo de oxisterol e da concentração. O colestane-3alfa-5beta-6alfa-triol foi o mais efetivo. A inibição da proliferação também foi promovida pelos oxisteróis, porém não foi observada alteração no ciclo celular / Mesenchymal stem cells (MSCs) are multipotent cells characterized by self-renewal and cellular differentiation capabilities. Oxysterols comprise a very heterogeneous group derived from cholesterol through enzymatic and non-enzymatic oxidation. Potent effects in cell death processes, including cytoxicity and apoptosis induction, were described in several cell lines. Very little is known about the effects of oxysterols in MSCs. 7-ketocholesterol (7-KC), one of the most important oxysterols, was shown to be cytotoxic to human adipose tissue-derived MSCs. Here, we describe the short-term (24 h) cytotoxic effects of cholestan-3alpha-5beta-6alpha-triol, 3,5 cholestan-7-one, (3alpha-5beta-6alpha)-cholestane-3,6-diol,7-oxocholest-5-en-3-beta-yl acetate, and 5beta-6beta epoxy-cholesterol, on MSCs derived from human adipose tissue. 3,5 cholestan-7-one and 7-oxocholest-5-en-3-beta-yl acetate did not promoted cell death or affect cell proliferation. The other oxysterols led to a complex mode of cell death that could include apoptosis, necrosis and autophagy, depending on the type of oxysterol and concentration. Cholestan-3alpha-5beta-6alpha-triol was the most effective. Inhibition of proliferation was also promoted by these oxysterols, but no changes in cell cycle were observed

No description available.

Produkce hyperpolarizovaných plynů, především helia (3He) nebo xenonu (129Xe), nachází stále rostoucí rozsah aplikací v zobrazování magnetickou rezonancí (MRI). Helium ani xenon nejsou obyčejně obsaženy v těle a experimenty tedy nejsou ovlivněny nechtěným signálem z okolních tkání. Ukázalo se, že několika hyperpolarizačními technikami může být magnetická polarizace (magnetizace) jader vzácných plynů zvýšena na hladinu, se kterou jsou praktické aplikace proveditelné. Hyperpolarizované plyny mohou tedy být užitečným nástrojem pro neinvazivní zkoumání lidského dýchání, dovolující statické zobrazování během zadržení dechu nebo zkoumání dynamiky výdechu nebo nádechu, nebo funkčního zobrazování. V neživé přírodě, mohou být hyperpolarizovaný plyny využity jako kontrastní látka při studiu mikroporézních materiálů, jako jsou zeolity, stavební látky a hmoty, atd. V této doktorské práci je popsán vývoj a konstrukce aparatury pro hyperpolarizaci xenonu (izotopu 129Xe). Nákup hyperpolarizovaného xenonu od jiných výzkumných center v zahraničí a jeho dovážení by ovšem nebylo efektivní a to zejména z důvodu náročnosti zajištění potřebných fyzikálních podmínek pro přepravu hyperpolarizovaného plynu. Toto bylo hlavní motivací k vývoji vlastní technologie pro přípravu hyperpolarizovaného xenonu. Se zvládnutou technologií by bylo možné navázat spolupráci s medicínskými zařízeními, nebo s týmy zabývající se živou nebo neživou přírodou (např. při studiu mikroporézních materiálů, gelů, v zemědělských aplikacích nebo při výzkumu využívajících zvířat, atd.). Cílem této práce je studium teorie hyperpolarizovaných vzácných plynů se zaměřením na 129Xe a experimentální ověření a změření relaxačních časů pomocí jaderné magnetické rezonance. Vzhledem k tomu, že je možné hyperpolarizované vzácné plyny skladovat pro pozdější využití, se tato práce také zabývá možnostmi zásobníku hyperpolarizovaného vzácného plynu a jeho teoretickým a experimentálním řešením. V této práci jsou popsány především dva základní typy experimentů přípravy hyperpolarizovaného xenonu. V obou jsou využity zatavené válcové skleněné vzorky naplněné xenonem a doplňujícím plynem – dusíkem, heliem. První z experimentů se zabývá měřením vlastností termálně polarizovaného xenonu a druhý měřením vlastností hyperpolarizovaného xenonu. Pro hyperpolarizaci 129Xe bylo použito výkonového laseru a experimentálně byla zkoumána jednak míra polarizace na základě změny spektrální hustoty čerpacího laserového svazku a dále pak optimální doba optického čerpání 129Xe a relaxační časy xenonu.

Différentes études ont montré que les facteurs liés au mode de vie, de même que le vieillissement ou l’amélioration des tests de diagnostic et de screening, ne peuvent à eux seuls expliquer l’incidence croissante des cancers dans les pays dits industrialisés. Bien que des changements de comportements aient conduit à une diminution du nombre de cancers en France, l’incidence des carcinomes hépatocellulaires est toujours en augmentation. D’autres facteurs oncogéniques, tels que l’exposition à des cancérogènes de l’environnement pourraient intervenir. Parmi ceux-ci, les hydrocarbures aromatiques polycycliques (HAP), dont le benzo[a]pyrène (B[a]P) est le chef de file, et qui sont retrouvés notamment dans la fumée de cigarette, les gaz d’échappements ou les aliments grillés, constituent une priorité en termes de santé publique du fait de leurs effets cancérogènes. Une caractéristique-clé commune à tous les cancers a trait à leur métabolisme énergétique particulier, basé sur la glycolyse. Cependant, rien n’est connu quant à une possible reprogrammation métabolique due aux HAP. L’objectif global de mon projet de thèse a donc été d’étudier l’impact in vitro du B[a]P, utilisé à faible concentration, sur le métabolisme énergétique, de préciser le rôle de la reprogrammation métabolique dans le contrôle de la balance survie/apoptose par le B[a]P et de caractériser les mécanismes cellulaires et moléculaires impliqués. Nous avons d’abord identifié une production de monoxyde d’azote (NO) résultant de l’activation de la iNOS par le B[a]P, et agissant comme un signal de survie, possiblement via une hyperpolarisation mitochondriale. Nous avons ensuite démontré que le B[a]P induit une reprogrammation métabolique des cellules en favorisant un métabolisme glycolytique au détriment de la phosphorylation oxydative. Enfin, nous avons identifié IF1, l’inhibiteur physiologique de la F0F1ATPase, comme une nouvelle cible des HAP, participant à la reprogrammation métabolique et capable de promouvoir la survie sous l’effet du B[a]P. Au total, nous montrons que ces altérations du métabolisme mitochondrial promues par le B[a]P, sont à l’origine de signaux de survie dans notre modèle de cellules épithéliales hépatiques F258. Ces mécanismes pourraient ainsi contribuer à la progression tumorale sous l’effet des HAP. / Various studies have shown that factors related to lifestyle (smoking, diet, etc.), as well as aging or even the improved efficiency of diagnostic and screening tests, cannot explain by themselves the rising incidence of cancers in the industrialized countries. Although evolution of behaviors has helped reducing the number of cancers in France, the incidence of hepatocellular carcinomas is still increasing. This alarming result could be related to other oncogenic factors such as chronic exposure to environmental carcinogens. Among these compounds, polycyclic aromatic hydrocarbons (PAHs), including benzo[a]pyrene (B[a]P), the prototype carcinogen of this family, especially found in cigarette smoke, exhaust fumes or grilled food, are a priority in terms of public health due to their high carcinogenic potential. A key feature of cancer cells is related to their predominant glycolytic metabolism. However, nothing is known yet about a possible metabolic reprogramming upon PAH exposure. My PhD project has aimed at characterizing the impact of a low B[a]P concentration on energy metabolism, at clarifying the role of such a metabolic reprogramming in cell fate determination, and at elucidating the cellular and molecular basis of this phenomenon. We first identify a production of nitric oxide (NO), involving the activation of iNOS by B[a]P, and acting as a survival signal. We then demonstrate that B[a]P induces a metabolic reprogramming, thus promoting a glycolytic metabolism at the expense of oxidative phosphorylation. Finally, we identify IF1, the physiological inhibitor of the F0F1ATPase as a new target of PAHs, which participates in the B[a]P-elicited metabolic reprogramming and survival. To sum up, we identify new alterations of mitochondrial metabolism, acting as survival signals in B[a]P-treated rat hepatic epithelial F258 cells. These mechanism could therefore contribute to tumor progression.

Numerous studies showed that cochlear implant (CI) users generally prefer individualized stimulation rates in order to maximize their speech understanding. The underlying reasons for the reported variation in speech perception performance as a function of CI stimulation rate is unknown. However, multiple interacting electrophysiological processes influence the auditory nerve (AN) in response to high-rate CI stimulation. Experiments studying electrical pulse train stimulation of cat AN fibers (ANFs) have demonstrated that spike rates slowly decrease over time relative to onset stimulation and is often attributed to spike rate (spike-triggered) adaptation in addition to refractoriness. Interestingly, this decay tends to adapt more rapidly to higher stimulation rates. This suggests that subthreshold adaptation (accommodation) plays a critical role in reducing neural excitability. Using biophysical computational models of cat ANF including ion channel types such as hyperpolarization-activated cyclic nucleotide-gated (HCN) and low threshold potassium (KLT) channels, we measured the strength of adaptation in response to pulse train stimulation for a range of current amplitudes and pulse rates. We also tested these stimuli using a phenomenological computational ANF model capable of applying any combination of refractoriness, facilitation, accommodation, and/or spike rate adaptation. The simulation results show that HCN and KLT channels contribute to reducing model ANF excitability on the order of 1 to 100 ms. These channels contribute to both spike rate adaptation and accommodation. Using our phenomenological model ANF we have also shown that accommodation alone can produce a slow decay in ANF spike rates responding to ongoing stimulation. The CI users that do not benefit from relatively high stimulation rates may be due to ANF accommodation effects. It may be possible to use electrically evoked compound action potentials (ECAP) recordings to identify CI users exhibiting strong effects of accommodation, i.e., the increasing strength of adaptation as a function of increasing stimulation rate. / Dissertation / Doctor of Philosophy (PhD) / Cochlear implants (CI) attempt to restore hearing to individuals with severe to profound hearing deficits by stimulating the auditory nerve with a series of electrical pulses. Recent CI stimulation strategies have attempted to improve speech perception by stimulating at high pulse rates. However, studies have shown that speech perception performance does not necessarily improve with pulse rate increases, leading to speculation of possible causes. Certain ion channels located in auditory nerve fibers may contribute to driving the nerve to reduce its excitability in response to CI stimulation. In some cases, those channels could force nerve fibers to cease responding to stimulation, causing a breakdown in communication from the CI to the auditory nervous system. Our simulation studies of the auditory nerve containing certain types of channels showed that the effective rate of communication to the brain is reduced when stimulated at high rates due to the presence of these channels.