The pike (Esox lucius) is a major predator and top-down regulator in the Baltic Sea where it exists in two sympatric forms. One spawn in streams and rivers and the other one spawn in the sea. During the last decades, the habitats for both of these forms have developed in a negative way. In some freshwater systems, up to 90 % of the water areas have disappeared, mainly through drainage and straightening of watercourses for agricultural purposes. In the sea, reproduction habitats decrease due to construction of harbours and human activities that create disturbances. The perhaps largest single factor negatively affecting recruitment of pike in the sea is the eutrophication. Bottoms are overgrown with filamentous algae and shallow bays are covered with dense Phragmites belts decreasing the habitats suitable for spawning. Further on, a predator on egg and fish larvae, the three-spined stickleback (Gasterosteus aculeatus) has increased in abundance. It is difficult to restore and enhance pike production in the sea and probably the only economically viable alternative is to make restorations in freshwater. However, there is a limited knowledge about the freshwater spawning pike in the Baltic Sea. Thus in this thesis I, together with my coauthors, set out with an aim to increase the knowledge base regarding anadromous pike behaviour. We found that pike of natal freshwater origin were common in the Baltic Sea. Through Sr:Ca studies in otoliths, about 45 % of the pike were interpreted to be of freshwater origin. The majority of the pike had emigrated out of freshwater at a length below 6 cm. These results indicate that freshwater recruitment is successful, contrasting the vast areas available for spawning in the sea. This creates incitements that restoration measures in these watercourses could have a significant effect on the pike population in the Baltic Sea. Further, in four streams running out in the Baltic Sea, more than three thousand pike were marked to study spawning migration. About 30-40 % returned to the same river the subsequent year. Most of the pike used the lower parts of the stream for spawning. The homing of pike to a watercourse indicate that freshwater pike in the Baltic Sea consist of specific populations and this is crucial information when taking decisions on fish restoration measures. Three wetlands adjacent to streams were restored for pike production. The most successful restoration involved minimal digging, with flooded grasslands providing optimal conditions for spawning. The first spawning season after restoration increased the pike production hundredfold. In conclusion, the anadromous pike are numerous in the Baltic Sea. To compensate for the decline in pike populations in the sea, “pike-factories” created along the coastline are probably the most justifiable option.

<p>Rates of habitat alteration and degradation are increasing worldwide due to anthropogenic influence. On coral reefs, the loss of live coral reduces structural complexity while facilitating algal increase. In many coastal lagoons seagrass and corals are cleared to make room for cultivated macroalgae. This thesis deals with reef and lagoon habitat structure and how fish assemblage patterns may be related to physical and biological features of the habitat. It further examines assemblage change following habitat disturbance. Four studies on East African coral reefs concluded that both the abundance and species richness of recruit and adult coral reef fish were largely predicted by the presence of live coral cover and structural complexity (Papers I-III, VI). Typically, recruits were more selective than adults, as manifested by limited distributions to degraded sites. Paper VI compared short- and long-term responses of fish assemblages to the 1997-1998 bleaching event. The short-term response to coral mortality included the loss of coral dwelling species in favour of species which feed on algae or associated detrital resources. Counterintuitively, fish abundance and taxonomic richness increased significantly at one of two sites shortly after the bleaching. However, the initial increase was later reversed and six years after the death of the coral, only a limited number of fish remained. The influence of fleshy algae on fish assemblages was studied in algal farms (Paper IV), and examined experimentally (Paper V). The effects of algal farming in Zanzibar were significant. Meanwhile, manually clearing algal-dominated patch reefs in Belize from macroalgae resulted in short-term increases of abundance, biomass and activity of a few species, including major herbivores. The findings of this thesis demonstrate the significance of habitat as a structuring factor for tropical fish assemblages and predicts that coral death, subsequent erosion and algal overgrowth may have substantial deleterious impacts on fish assemblage composition, abundance and taxonomic richness, with recovery being slow and related to the recovery of the reef framework.</p>

<p><strong>Abstract</strong></p><p>The European eel (<em>Anguilla anguilla</em>) migrates to the Sargasso Sea to spawn. Even though the biology of <em>A. anguilla </em>leptocephali in the Sargasso Sea has been studied for several decades, information regarding their diet has remained unknown until now. Previous dietary studies concerning other species of leptocephali in the Pacific Ocean have been limited to the recognition of identifiable prey remains amongst gut contents. Hence, in this study a molecular approach relying on the detection of prey DNA amongst gut contents was used to study dietary profiles of <em>A. anguilla</em> leptocephali in the Sargasso Sea.</p><p> </p><p>Leptocephali were collected during the circumglobal Galathea 3 expedition in spring 2007 to the Sargasso Sea. DNA extracted from gut contents were PCR amplified using universal primers targeting the nuclear 18S rRNA gene. In order to separate eel amplicons from prey amplicons, PCR products were analyzed by denaturing gradient gel electrophoresis (DGGE). Furthermore, clone libraries were constructed using universal primers targeting a portion of the 18S rRNA and mitochondrial COI gene, respectively. In total, the gut contents of 78 leptocephali were screened by DGGE.</p><p> </p><p>A diverse array of eukaryotic taxa was identified, hence demonstrating the applicability of a universal PCR- DGGE approach to study gut contents of leptocephali. The results presented here show, for the first time, that young stages of <em>A. anguilla</em> leptocephali feed on a large variety of zooplankton of which many were gelatinous (e.g. Hydrozoa, Thaliacea and Ctenophora). Several of the identified taxa also constitute important parts of the Sargasso Sea zooplankton community and are of size ranges (adult or larval stages) that made them reasonable as leptocephali prey.</p>

Abstract The European eel (Anguilla anguilla) migrates to the Sargasso Sea to spawn. Even though the biology of A. anguilla leptocephali in the Sargasso Sea has been studied for several decades, information regarding their diet has remained unknown until now. Previous dietary studies concerning other species of leptocephali in the Pacific Ocean have been limited to the recognition of identifiable prey remains amongst gut contents. Hence, in this study a molecular approach relying on the detection of prey DNA amongst gut contents was used to study dietary profiles of A. anguilla leptocephali in the Sargasso Sea.   Leptocephali were collected during the circumglobal Galathea 3 expedition in spring 2007 to the Sargasso Sea. DNA extracted from gut contents were PCR amplified using universal primers targeting the nuclear 18S rRNA gene. In order to separate eel amplicons from prey amplicons, PCR products were analyzed by denaturing gradient gel electrophoresis (DGGE). Furthermore, clone libraries were constructed using universal primers targeting a portion of the 18S rRNA and mitochondrial COI gene, respectively. In total, the gut contents of 78 leptocephali were screened by DGGE.   A diverse array of eukaryotic taxa was identified, hence demonstrating the applicability of a universal PCR- DGGE approach to study gut contents of leptocephali. The results presented here show, for the first time, that young stages of A. anguilla leptocephali feed on a large variety of zooplankton of which many were gelatinous (e.g. Hydrozoa, Thaliacea and Ctenophora). Several of the identified taxa also constitute important parts of the Sargasso Sea zooplankton community and are of size ranges (adult or larval stages) that made them reasonable as leptocephali prey.

Rates of habitat alteration and degradation are increasing worldwide due to anthropogenic influence. On coral reefs, the loss of live coral reduces structural complexity while facilitating algal increase. In many coastal lagoons seagrass and corals are cleared to make room for cultivated macroalgae. This thesis deals with reef and lagoon habitat structure and how fish assemblage patterns may be related to physical and biological features of the habitat. It further examines assemblage change following habitat disturbance. Four studies on East African coral reefs concluded that both the abundance and species richness of recruit and adult coral reef fish were largely predicted by the presence of live coral cover and structural complexity (Papers I-III, VI). Typically, recruits were more selective than adults, as manifested by limited distributions to degraded sites. Paper VI compared short- and long-term responses of fish assemblages to the 1997-1998 bleaching event. The short-term response to coral mortality included the loss of coral dwelling species in favour of species which feed on algae or associated detrital resources. Counterintuitively, fish abundance and taxonomic richness increased significantly at one of two sites shortly after the bleaching. However, the initial increase was later reversed and six years after the death of the coral, only a limited number of fish remained. The influence of fleshy algae on fish assemblages was studied in algal farms (Paper IV), and examined experimentally (Paper V). The effects of algal farming in Zanzibar were significant. Meanwhile, manually clearing algal-dominated patch reefs in Belize from macroalgae resulted in short-term increases of abundance, biomass and activity of a few species, including major herbivores. The findings of this thesis demonstrate the significance of habitat as a structuring factor for tropical fish assemblages and predicts that coral death, subsequent erosion and algal overgrowth may have substantial deleterious impacts on fish assemblage composition, abundance and taxonomic richness, with recovery being slow and related to the recovery of the reef framework.

<p>This thesis concerns the predator-prey interactions of three raptor species in a Swedish arctic community: the gyrfalcon (<i>Falco rusticolus</i>), the rough-legged buzzard (<i>Buteo lagopus</i>) and the golden eagle (<i>Aquila chrysaetos</i>).</p><p>The gyrfalcon behaved like a highly specialised ptarmigan (<i>Lagopus spp.</i>) predator. Gyrfalcon’s functional response to ptarmigan was close to density independent, and ptarmigan remained the dominating prey even in areas with the lowest ptarmigan density. The gyrfalcon did not respond functionally to microtine rodents (i.e. lemmings and voles) and it was clear that the gyrfalcon did not use microtines as an alternative prey category to ptarmigan. As the gyrfalcons did not switch to any alternative prey when ptarmigan was scarce, their reproductive success seemed to be directly dependent on the amount of ptarmigan available in the breeding territories. Of the two ptarmigan species in the study area, rock ptarmigan (<i>L. mutus</i>) dominated gyrfalcon’s diet. Locally, the proportion of rock ptarmigan in gyrfalcons’ diets showed a positive relationship to the expected availability of rock ptarmigan in the breeding territories, indicating a density dependent utilisation. </p><p>The rough-legged buzzard behaved like a highly specialised microtine rodent predator and Norwegian lemming (<i>Lemmus lemmus</i>) was its preferred microtine species. The buzzards showed a type 2 functional response to lemmings. Surprisingly though, they also had a type 3 functional response to grey-sided voles (<i>Clethrionomus rufocanus</i>). We present an optimal diet model where a central place forager, during good food conditions, benefits from partial prey preference, which renders separate functional responses to each prey category. We discuss how the double functional responses of the buzzard affect the population dynamics of sympatric vole species, on both temporal and spatial scales.</p><p>The golden eagle behaved like a generalist predator, and it preyed on all major prey categories in the study area: microtines, ptarmigan, mountain hare, (<i>Lepus timidus</i>) and reindeer (<i>Rangifer tarandus</i>). It seemed to respond functionally to microtine rodent fluctuations with an increased consumption of lemmings during a peak year in the microtine rodent cycle. The golden eagle showed a numerical response to its main prey, the ptarmigan. </p><p>Ptarmigan, microtine rodents and hares seemed to have synchronized population fluctuations in the study area. Such synchronized population fluctuations are believed to be generated by predation. Although the three raptors are the main predators of their community, their predation patterns fail to explain the observed prey population dynamics in the study area. </p>

<p>Two decades ago the recruitment of YOY perch (<em>Perca fluviatilis</em>) started to decline along the Swedish east cost of the Baltic Sea. Factors that influence recruitment are e.g. eutrophication that causes habitat losses and overfishing of cod (<em>Gadus morhua</em>) which causes cascading effects in the food web. Filamentous cyanobacterial blooms are often toxic and has increased in the Baltic Sea and its coastal waters. The aim of this field study was to evaluate the effects of salinity and cyanobacterial exposure on fitness related parameters of young of the year (YOY) perch (<em>Perca Fluviatilis</em>) in a natural environment. Our study was performed in the Curonian Lagoon (Lithuania) in August 2009. The lagoon offers a temporary salinity gradient (wind induced influxes from the Baltic Sea) ranging from 7 psu in the north to 0 psu in the south. Submerged enclosures containing YOY perch were set up at three different locations along the salinity gradient in the Lagoon (referred to as North, Middle, South). The duration of the experiment was 21 or 27 days, depending on treatment. Measurements of perch condition were specific growth rate, somatic condition index (SCI) and whole fish lipid and protein content. Average chl <em>a</em> values for the three stations during the experimental time were: north 180 ± 70 µg/l chl <em>a</em>, middle 133 ± 36 µg/l chl <em>a</em> and south 180 ± 52 µg/l chl <em>a</em>. The North and the Middle stations experienced two different salinity influxes reaching a maximum salinity of 6.5 psu at the northern station. The duration of each saline influx was approximately 4-6 days. The saline water did not reach the Southern station at any time. Results show that perch from the southern station were in best condition in terms of specific growth rate and contents of total lipids. Compared to the South the perch condition declined to the Middle station and was lowest at the Northern station which experienced the highest degree of fluctuation in terms of salinity and cyanobacterial exposure. Examination of the abundance of the main food resource at the different stations revealed no statistical differences, which suggest that availability of food was not a factor in explaining the differences in growth.  The results possibly indicate that a changing environment with the potential synergistic negative effects of salinity and cyanobacteria has a higher negative impact on YOY perch condition compared to constantly high concentrations of cyanobacteria.</p>

<p>Industrial and domestic sewage effluents have been found to cause reproductive disorders in wild fish, often as a result of the interference of compounds in the effluents with the endocrine system. This thesis describes laboratory-based exposure experiments and a field survey that were conducted with juveniles of the three-spined stickleback, <i>Gasterosteus aculeatus</i>. This small teleost is a common fish in Swedish coastal waters and was chosen as an alternative to non-native test species commonly used in endocrine disruption studies, which allows the comparison of field data with results from laboratory experiments.</p><p>The aim of this thesis was to elucidate 1) if genetic sex determination and differentiation can be disturbed by natural and synthetic steroid hormones and 2) whether this provides an endpoint for the detection of endocrine disruption, 3) to evaluate the applicability of specific estrogen- and androgen-inducible marker proteins in juvenile three-spined sticklebacks, 4) to investigate whether estrogenic and/or androgenic endocrine disrupting activity can be detected in effluents from Swedish pulp mills and domestic sewage treatment plants and 5) whether such activity can be detected in coastal waters receiving these effluents.</p><p>Laboratory exposure experiments found juvenile three-spined sticklebacks to be sensitive to water-borne estrogenic and androgenic steroid substances. Intersex – the co-occurrence of ovarian and testicular tissue in gonads – was induced by 17β-estradiol (E2), 17α-ethinylestradiol (EE2), 17α-methyltestosterone (MT) and 5α-dihydrotestosterone (DHT). The first two weeks after hatching was the phase of highest sensitivity. MT was ambivalent by simultaneously eliciting masculinizing and feminizing effects. When applying a DNA-based method for genetic sex identification, it was found that application of MT only during the first two weeks after hatching caused total and apparently irreversible development of testis in genetic females. E2 caused gonad type reversal from male to female. E2 and EE2 induced vitellogenin - the estrogen-responsive yolk precursor protein, while DHT and MT induced spiggin – the androgen-responsive glue protein of the stickleback.</p><p>None of the effluents from two pulp mills and two domestic sewage treatment plants had any estrogenic or androgenic activity. Juvenile three-spined sticklebacks were collected during four subsequent summers at the Swedish Baltic Sea coast in recipients of effluents from pulp mills and a domestic sewage treatment plant as well as remote reference sites. No sings of endocrine disruption were observed at any site, when studying gonad development or marker proteins, except for a deviation of sex ratios at a reference site.</p><p>The three-spined stickleback – with focus on the juvenile stage – was found to be a sensitive species suitable for the study of estrogenic and androgenic endocrine disruption.</p>

<p>The focus of this thesis is the early detection of stress in the environment. It has been proposed that studies on the cellular level would detect stress reactions earlier in time compared to common physiological methods. In a series of experiments we investigated how different stress factors, both natural and introduced by man, affect levels of stress proteins. One- and two-dimensional gels were used to determine individual proteins and families of proteins. The two-dimensional gels were also used in a proteomic approach, were the presence and absence of proteins after treatment was observed, and the protein expression signatures (PES) were identified. </p><p>Baltic <i>Mytilus edulis</i> was used in all experiments and it is evident that earlier observed differences in physiological rates and pollution sensitivity, compared to marine mussels, is also manifested as lower concentrations of stress proteins after exposure to copper and cadmium. When the Baltic mussels were allowed to acclimate for one month the difference decreased, suggesting an environmentally induced difference (paper I). Pre-exposure to heat before exposure to either a second heat-shock or cadmium was found to enhance the levels of HSP70 and thus tolerance, significantly (paper II). Exposure to a mixture of stress factors (PCB, copper and lowered salinity) revealed synergistic, additive and antagonistic effects in induction of 6 different stress proteins. When analyzing a large number of proteins it was shown that it is possible to identify PES with this technique, and we hypothesize that it could be possible to separate responses to mixtures of stress factors (Papers III and IV). Different techniques were also applied to analyze the protein expression pattern when mussels were exposed to PAH- and PCB-fractions extracted from Baltic Sea sediments. In this experiment the protein assays were accompanied by physiological measurements. All methods indicated stressed conditions, but the variation between individual mussels within treatments was smaller in terms of protein response than for physiological parameters (paper V). It is concluded that measuring the induction of stress proteins is a reliable way to detect stressful conditions. Proteins visualized on a one dimensional gel give a “gross” picture of an organism’s condition. The major challenge is to identify the origin and severity of the elucidated stress response. Further mapping of two-dimensional gels suggested that protein patterns are specific to type and level of stress. </p><p>A most important future step is to establish links between sub-cellular protein response to well known physiological effects. This should include long term experiments where altered protein expression signatures are linked to life history characteristics like survival, growth and reproductive success.</p>

<p>In the green-veined white butterfly (<i>Pieris napi</i>), females obtain direct fitness benefits from mating multiply and studies have shown that fitness increases seemingly monotonically with number of matings. The reason is that at mating males transfer a large nutritious gift (a so called nuptial gift) to the females that the females use to increase both their fecundity and lifespan. In addition, if exposed to poor food conditions as larvae, females mature at a smaller size compared to males. Accordingly, it was suggested that smaller females could compensate for their size through nuptial feeding by, for instance, mating more frequently. We did not find any support for that hypothesis. On the contrary, larger females remated sooner and had a higher lifetime number of matings. Neither were smaller females able to compensate in any other way, because singly mated females and multiply mated females suffered to the same extent from their smaller size. This thesis also shows that despite the positive relationship between fitness and number of matings, there is a large variation in female mating frequency in wild populations and about every second female mates only once or twice. This variation is not dependent on how often females get courted by males, because female mating frequency was shown not to be affected by male courtship intensity. Hence, the reason for the low mating frequency could either be that males have evolved the ability to manipulate females to mate at a suboptimal rate as a measure of protection against sperm competition, or alternatively, that female mating rate is suppressed by some costs. Using two selection lines, artificially selected for either a high or a low mating rate, we showed that the variation in mating rate was mainly a female trait because which line the females were from affected their mating rate whereas which line the male was from did not. This implies that females mate at a low rate due to hidden costs or due to constraints. The same study also showed that females with a high "intrinsic" mating rate lived shorter, but only when denied remating. This led us to test the hypothesis that the cost females face is to have the ability to mate at a high rate but the cost is only paid when remating opportunities are scarce. However, we found no support for such an idea, because females with a high intrinsic mating rate held in a cold environment where the butterflies were prevented from flying and feeding did not live shorter. Neither was there an effect of a female’s mating rate on her ability to quickly break down and convert male nutrient gifts into egg material. Female mating rate did, on the other hand, affect dispersal tendency, with low mating rate females being more inclined to fly between different habitats. The underlying reason for this is still to be explored.</p>