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Malignant Melanoma Classification with Deep Learning / Klassificering av malignt melanom genom djupinlärningKisselgof, Jakob January 2019 (has links)
Malignant melanoma is the deadliest form of skin cancer. If correctly diagnosed in time, the expected five-year survival rate can increase up to 97 %. Therefore, exploring various methods for early detection can contribute with tools which can be used to improve detection of disease and finally to make sure that help is given in time. The purpose of this work was to investigate the performance and behavior of different convolutional neural network (CNN) architectures and to explore whether presegmenting clinical images would improve the prediction results on a binary classifier system. For the purposes of this paper, the two selected CNNs were Inception v3 and DenseNet201. The networks were pretrained on ImageNet and transfer learning techniques such as feature extraction and fine-tuning were used to extract the features of the training set. Batch size was varied and five-fold cross-validation was applied during training to find the optimal number of epochs for training. Evaluation was done on the ISIC test set, the PH2 dataset and a combined set of images from Karolinska University Hospital and FirstDerm, where the latter was also cropped to evaluate presegmentation. The achieved results for the ISIC test set were AUCs of 0.66 for Inception v3 and 0.71 for DenseNet201. For the PH2 test set, the AUCs were 0.82 and 0.73. The results for the Karolinska and FirstDerm set were 0.49 and 0.42. Presegmenting the latter test set resulted in AUCs of 0.58 and 0.51. In conclusion, quality of images could have a big impact on the classification performance. Batch size seems to affect the performance and could thus be an important hyperparameter to tune. Ultimately, the Inception v3 architecture seems to be less affected by different variability why selecting this architecture for a real-world clinical image application could be more suitable. However, the networks performed much worse than state of the art results in previous papers and the conclusions are based on rather inconclusive results. Therefore more research has to be done to verify the conclusions. / Malignt melanom är den dödligaste formen av hudcancer. Om en korrekt diagnos sätts tillräckligt tidigt kan den femåriga överlevnadsgraden uppgå till 97 %. Detta gör att forskningen efter metoder för tidigarelagd upptäckt kan bidra med verktyg som i sin tur kan användas till att upptäcka sjukdom och slutligen bidra till att hjälp sätts in i tid. Målet med detta arbete var att undersöka prestanda och beteende för olika faltningsbara neurala nätverk (CNN) och att undersöka ifall försegmentering av kliniska bilder kunde förbättra resultaten i ett binärt klassificeringssystem. De utvalda faltningsbara neurala nätverksarkitekturerna var Inception v3 och DenseNet201. Nätverken var förträanade på ImageNet och "Transfer-learning"-metoder som feature extraction och fine-tuning användes för att extrahera features från träningsuppsättningen. Batch size varierades och femtalig korsvalidering användes för att hitta det optimala antalet träningsepoker. Utvärderingen gjordes med bilder i testset från ISIC, PH2 och Karolinska och FirstDerm. Bilderna i den senare datamängden beskärdes för att utvärdera försegmenteringen av kliniska bilder. De uppnådda resultaten för ISIC testmängden var AUC-värden på 0.66 för Inception v3 och 0.71 för DenseNet201. För PH2 låg AUC-värdena på 0.82 respektive 0.73. Resultaten för testmängden med bilder frön Karolinska och FirstDerm var 0.40 och 0.42. Försegmenteringen av den sistnämnda testmängden gav AUC-värden på 0.58 och 0.51. Sammanfattningsvis kan bildkvalitet ha en stor inverkan på ett nätverks klassificeringsprestanda. Batch size verkar också påverka resultaten ochkan därför vara en viktig hyperparameter att stämma. Slutligen verkar Inception v3 vara mindre känslig för olika typer av variabiltet vilket görvalet av denna arkitektur mer lämplig ifall en riktig applikation ska byggas för detektion av exempelvis kliniska bilder. Det som bör understrykas i detta arbete är att resultaten var mycket sämre än det som bäst uppvisats i föregående rapporter och att slutasatserna är baserade på relativt ickeövertygande värden. Därför efterkrävs mer forskning för att styrka slutsatserna.
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Automatic Melanoma Diagnosis in Dermoscopic Imaging Base on Deep Learning SystemNie, Yali January 2021 (has links)
Melanoma is one of the deadliest forms of cancer. Unfortunately, its incidence rates have been increasing all over the world. One of the techniques used by dermatologists to diagnose melanomas is an imaging modality called dermoscopy. The skin lesion is inspected using a magnification device and a light source. This technique makes it possible for the dermatologist to observe subcutaneous structures that would be invisible otherwise. However, the use of dermoscopy is not straightforward, requiring years of practice. Moreover, the diagnosis is many times subjective and challenging to reproduce. Therefore, it is necessary to develop automatic methods that will help dermatologists provide more reliable diagnoses. Since this cancer is visible on the skin, it is potentially detectable at a very early stage when it is curable. Recent developments have converged to make fully automatic early melanoma detection a real possibility. First, the advent of dermoscopy has enabled a dramatic boost in the clinical diagnostic ability to the point that it can detect melanoma in the clinic at the earliest stages. This technology’s global adoption has allowed the accumulation of extensive collections of dermoscopy images. The development of advanced technologies in image processing and machine learning has given us the ability to distinguish malignant melanoma from the many benign mimics that require no biopsy. These new technologies should allow earlier detection of melanoma and reduce a large number of unnecessary and costly biopsy procedures. Although some of the new systems reported for these technologies have shown promise in preliminary trials, a widespread implementation must await further technical progress in accuracy and reproducibility. This thesis provides an overview of our deep learning (DL) based methods used in the diagnosis of melanoma in dermoscopy images. First, we introduce the background. Then, this paper gives a brief overview of the state-of-art article on melanoma interpret. After that, a review is provided on the deep learning models for melanoma image analysis and the main popular techniques to improve the diagnose performance. We also made a summary of our research results. Finally, we discuss the challenges and opportunities for automating melanocytic skin lesions’ diagnostic procedures. We end with an overview of a conclusion and directions for the following research plan.
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