Plant roots host a wide spectrum of endophytic fungi ranging from parasites through neutralistic fungi to mutualistic mycorrhizal fungi. In most of terrestrial ecosystems, these groups of symbiotic fungi are well documented. However, much less is known about fungal endophytes of aquatic plants, especially the only group of submerged marine plants, seagrasses. We focused on roots of the seagrass species Posidonia oceanica which is a Mediterranean endemite. Its roots hosted an abundant presence of endophytic fungi. We examined the roots using optical and electron microscopy in order to study its morphology. We isolated the mycobionts and determined their taxonomic classification. A specific symbiosis of P. oceanica roots and dark coloured septate fungus has been recorded all over a vast area of the Mediterranean spreading from southern Spain to south Turkey. The fungus forms distinctive and typical structures: superficial hyphae occasionally forming hyphal sheaths or dense hyphal nets, intraradical hyphae colonizing extracellular space and, occasionally, primary cortex cells, and finally intracellular microsclerotia. The colonization pattern of the fungi resembles dark septate endophytes (DSE), group of fungi commonly found in roots of both terrestrial and freshwater plants. In our following studies, we...