京都大学 / 0048 / 新制・課程博士 / 博士(農学) / 甲第20635号 / 農博第2242号 / 新制||農||1052(附属図書館) / 学位論文||H29||N5079(農学部図書室) / 京都大学大学院農学研究科食品生物科学専攻 / (主査)教授 入江 一浩, 教授 平井 伸博, 教授 田中 千尋 / 学位規則第4条第1項該当 / Doctor of Agricultural Science / Kyoto University / DGAM

A frequent source of pine tree mortality in recent years can be attributed to pine bark beetles and their vectored Ophiostomatoid fungi, an organism that has been observed to attract subterranean termites that preferentially recruit to this downed woody debris. This interaction may significantly modify biogeochemical fluxes in bark beetle mass mortality events, but studies are often limited to singular regions or single pine-dominated ecosystems. Two studies were designed to test the interactive effects of these associations on terrestrial biogeochemical cycles and decomposition processes, the first using replicated field trials in Mississippi, Arizona, and Honduras across two years and the second across five years in Mississippi. Both studies utilized Ophiostomatoid inoculation and invertebrate exclusion techniques to determine the individual and interactive contributions from biotic factors on biogeochemical cycling. Local drivers were found to have greater influence on biogeochemical cycling and decomposition before climate drivers overwhelmed their influence in later years.

Reference ecosystems are a valuable tool for restoration and management efforts in degraded ecosystems. Longleaf pine (Pinus palustris), a pyrophytic southeastern U.S. ecosystem, have declined precipitously in extent since European settlement. Pine mortality and growth patterns were examined in a 15-year re-measurement study in two old-growth stands. Both stands experienced postire mortality and short-lived decreases in basal area. Distance to nearest neighbor had a significant effect on mortality of small (<10 cm DBH) pine. To better approximate reference conditions, saplings of five co-occurring hardwood species were destructively measured for bark accumulation and taper using bark and wood thickness. Significant species differences were detected in bark:wood ratio (P<0.001), with no difference in wood diameter. Blackjack oak (Quercus marilandica) had a bark:wood ratio 3x the closest species and steeper slopes of bark accumulation, suggesting that it is a fireapted species. These results will inform reference conditions for critical regional pine restoration efforts.

Intercropping switchgrass (Panicum virgatum) between tree rows within young pine (Pinus spp.) plantations is a novel method to generate lignocellulosic biofuel feedstocks within intensively managed forests. Intensively managed pine supports diverse avian assemblages potentially affected by establishment and maintenance of a biomass feedstock. I sought to understand how establishing switchgrass on an operational scale affects bird communities within intercropped plantations as compared to typical intensively managed loblolly pine (Pinus taeda) plantations. I conducted breeding bird point counts, nest searching and monitoring, and coarse woody debris (CWD) surveys following establishment of intercropped switchgrass stands (6 replicates), traditionally-managed pine plantations, and switchgrass-only plots (0.1 km2 minimum) in Kemper Co., MS from 2011 to 2013. I found establishment of intercropping did not affect downed CWD, but reduced standing snags and green trees. I detected 59 breeding bird species from 11,195 detections and modeled nest survivorship for 17 species. Neotropical migrants and forest-edge associated species were less abundant in intercropped plots than controls for two years after establishment, and more abundant in year three. Short distance migrants and residents were scarce in intercropped and control plots initially, and did not differ between these treatments in any year. Species associated with pine-grass habitat structure were less abundant initially in intercropped plots, but converged with pine controls in subsequent years. Switchgrass monocultures provided minimal resources for birds. There was no evidence supporting an effect of intercropping on songbird nest survivorship. I found evidence for dominance of one species, yellow-breasted chat (Icteria virens), over another, indigo bunting (Passerina cyanea) in competition for nest sites, which illustrates how songbirds competing for nest sites can coexist in sympatry without the dominant species driving subordinate competitors to local extirpation. This dissertation, and related publications, are among the earliest research on wildlife response to intercropping. Forest managers implementing intercropping within pine plantations where vertebrate conservation is a management priority should be aware of potential changes to snag-utilizing species from reductions in green trees and snags. Songbird populations may lag behind traditional management for up to two years following establishment of switchgrass. Intercropping neither positively nor negatively affected songbird nest survival.

Interest in renewable energy and governmental mandates has motivated land managers to consider cellulosic feedstocks for bioenergy. I investigated plant community response to a system including switchgrass (Panicum virgatum) as a feedstock intercropped with loblolly pine (Pinus taeda). I estimated plant species evenness, richness, and diversity and biomass production, with emphasis on white-tailed deer (Odocoileus virginianus) forages. I detected 225 species in 2,220 1-m2 quadrats, and 7,495 biomass samples (96.4 kg dry weight) from 960 quadrats. Intercropping reduced plant species diversity, total non-pine tree biomass, and biomass of deer forages during switchgrass establishment. These effects were no longer apparent at treatment level two years after switchgrass establishment, except that deer browse and total deer forage biomass remained less in intercropped interbeds. Intercropping in managed pines may temporarily effect plant communities but further studies are needed to examine longer term effects and to quantify effects on nutritional carrying capacity for deer.

In the Western United States, the Great Basin is a geographic feature that is home to a variety of unique species, including Great Basin bristlecone pine (Pinus longaeva, PILO). P. longaeva is well known for the age of some of the trees, some of which are over 4000 years old. In this study 17 microsatellite markers (simple sequence repeat, SSR) are identified and used to genotype a selection of 480 individuals spread across 24 PILO populations and 60 individuals divided equally between 2 outgroup species, Pinus aristata and Pinus flexilis. One population of PILO, HMW, shows more genetic similarity with P. aristata, and is included with outgroup species in the analysis. The population structure of PILO is examined and found to be weakly related to the geographic distance between populations. The population statistics Fst, Gst, Rst, Dest and an AMOVA analysis suggest that there is a substantial amount of admixture at the individual level, similar to some other species of pines. Phylogenetic trees computed using the neighbor-joining method based on the average population genetic distance and based on individual genetic distance support the population structure results and show further evidence that most of the species variation is concentrated at the individual level, rather than inside of or between species. It is possible that gene flow is still occurring, or that gene flow has occurred recently enough that the separated populations have not yet diverged from each other in a measurable way.

No description available.

Strawberry plants (Fragaria x ananassa) and Scots pine (Pinus sylvestris) represent species, withinagriculture and forestry respectively, that are traditionally protected by utilization of pesticidesincluding neurotoxic insecticides. More environmentally friendly protection strategies are thereforehighly desirable. Treating plants with specific metabolites naturally occurring in their tissues might alterepigenetic mechanisms, which in turn may strengthen plants self-defense against diseases and weevilattacks. F. x ananassa and P. sylvestris seeds were treated with 2,5 mM nicotinamide and 2,5 mMnicotinic acid in order to investigate possible epigenetical effects by analyzing changes in the level ofthe DNA methylation. The epigenetic changes, for both plants, were analyzed on the global DNA level.Reduction in the DNA methylation level in strawberry leaves as well as the DNA methylation increase inpine needles were observed by means of LUMA-analysis when HpaII restriction enzyme was used in theanalysis. Further investigation is required in order to understand if NIC and NIA may have a significantimpact on pathogen attack in strawberry plants and Scots pine. More research may also unveil ifnicotinamide and nicotinic acid can play a potential role in more sustainable defense strategies ofplants. / Jordgubbsplantor (Fragaria x ananassa) och tallar (Pinus sylvestris) representerar växter inom jord- ochskogsbruk som traditionellt skyddas genom användning av bekämpningsmedel, detta inklusiveneurotoxiska insekticider. Mer miljövänliga skyddsstrategier är därför mycket önskvärda. Behandling avväxter med specifika naturligt förekommande metaboliter genererade av växterna kan påverkaepigenetiska mekanismer. Förändringar på den epigenetiska nivån kan, i sin tur, bidra till förstärkningav växternas eget självförsvar mot sjukdomar och insektsangrepp. Frön av både F. x ananassa och P.sylvestris behandlades med 2,5 mM nikotinamid och 2,5 mM nikotinsyra i syfte att undersökaeventuella epigenetiska effekter. Detta genom att analysera förändringar i graden av DNA metylering ide behandlade plantorna. De epigenetiska förändringarna för jordgubbsplantor och tallar analyseradespå den globala DNA-nivån. Minskad DNA-metylering i jordgubbsblad samt ökad DNA-metylering itallbarr observerades med hjälp av restriktionsenzymet Hpall och LUMA-analys. Ytterligareundersökningar behövs för att kunna förstå om NIC och NIA kan ha en inverkan på patogenangrepp ijordgubbsplantor och tall. Mer forskning kan också avslöja om nikotinamid och nikotinsyra kan ha enbetydande roll inom hållbara försvarsstrategier för växter.

The Swedish forestry and the use of clearcutting models has resulted in great losses of older forests in Sweden, resulting in several species being affected negatively. Hair lichens are important organisms that are providing several ecological functions in forest ecosystems and are declining due to being associated with older forests with high continuity. This study investigates the occurrence and dispersal ability of the genus Alectoria, Bryoria and Usnea between older forests and young secondary forests in three different areas in Storuman municipality, Västerbotten county. Bryoria were found on all trees in all forest patches, both in the old and young forest patches, while Alectoria had much lower occurrence in the young secondary forest. Usnea had no observed pattern in occurrence between the different areas. The average length of the lichens, here used as a proxy for lichen biomass, showed a statistical difference in biomass between areas for genera Bryoria and Usnea. The genera Alectoria showed a difference in biomass between areas, distance to closest older forest and the interaction between these two. Therefore, this study suggests that Alectoria is limited in dispersal in these areas. Some of the results could be explained by distribution and dispersal ability of the studied genera. To further evaluate the differences seen in occurrence and biomass between the genera and the different areas more studies are needed. This could provide important information for sustainable forestry that favors lichens and benefits reindeer husbandry.

Application of biosolids as an alternative source of Nitrogen (N) is becoming a common silviculture practices on loblolly pine forest. However, little is known about how biosolids type, application rate, and timing affect forest floor and soil N availability in pine plantations. The objectives of this study were to determine the effect of different types, rates, and season of application of biosolids on forest floor and soil N. The study was established in a 17-year-old loblolly pine plantation in Amelia County, VA. Anaerobically digested (AD225), lime stabilized (LS225), and pelletized (Pellet225) biosolids and a conventional inorganic urea plus diammonium phosphate fertilizer (U+DAP225) were surface applied at a rate of 225 kg ha-1 based on Plant Available Nitrogen (PAN) between March 5th and 10th, 2006. Anaerobically digested biosolids were also surface applied at the rates of 900 kg PAN ha-1 and 1800 kg PAN ha<sup>-</sup¹ (AD900 and AD1800). Anaerobically digested biosolids at the rate of 900 kg PAN ha⁻¹ were also applied on November 5th, 2005 (AD900F). Surface application of different type of biosolids in a loblolly pine plantation increased soil N availability and mineralization when biosolids were applied at the permitted rate of 225 kg PAN ha⁻¹. Surface soil NH₄-N and NO₃-N availability and N mineralization was significantly different among biosolids type over time. N release from different type of biosolids depends on the initial inorganic N content, and N mineralization in biosolids. The average soil N availability and mineralization was significantly greater in the Pellet225 treatments than in all the other treatments. Soil N availability decreased in winter in all the treatments but remained generally higher than the control until the end of the second growing season. Nitrate-N concentrations in lysimeters were below water quality standard limits in all the treatments applied at the rate of 225 kg PAN ha⁻¹. Accumulation of N, C, and Ca in the forest floor was well correlated with the amount of biosolids applied on each treatment. The surface application of different type of biosolids had minimal impact upon total N and C in the mineral soil. Increasing application rates of anaerobically digested biosolids directly increased soil N availability and mineralization. Nitrate-N concentrations in lysimeters were above water quality standards limits during several months in the AD900 and AD1800 treatments. Significant differences in the forest floor total N, C and Ca were observed with increasing application rates of biosolids. Total C accumulation was significantly higher in the forest floor in the AD1800 treatment. However, we observed no effect on soil total C with increasing application rates of biosolids. We found that biosolids application during spring significantly increased soil extractable N, N mineralization, NO₃-N leaching, and total C in the mineral soil in comparison to the fall application. Fall application significantly increased NH₄-N leaching and soil extractable Ca. We observed no significant effect on ion exchangeable N measured on membranes, total N, C, Ca, and pH measured in the forest floor, and soil total N and pH in the mineral soil. Our results demonstrated that permitted surface application of biosolids at the rate of 225 kg PAN ha⁻¹ in a loblolly pine plantation increased surface soil N availability without increasing the potential for NO₃-N groundwater pollution. / Ph. D.