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Izolace nukleových kyselin pro diagnostické účely s využitím polymerních nosičů / Nucleic acids isolation for diagnostic purposes using polymeric carriersSyslová, Ivona January 2009 (has links)
The isolation of deoxyribonucleic acid (DNA) was studied in the diploma thesis by using three different methods: phenol extraction, salting with sodium chloride and magnetic separation with reversible adsorption of nucleic acids on different magnetic carriers. There were used five different properly functionalized carriers for the isolation of DNA: magnetic silicagel, P(HEMA-co-GMA) ox. I, P(HEMA-co-GMA) ox. II, Dynal DNA Direct and Perovskit 439. The reversible imobilization of DNA on the magnetic carrier was proceeded under the conditions of high concentration of NaCl and poly(ethyleneglycol) (PEG). There was induced the condensation of DNA by 2 M NaCl and PEG with molecular mass 6000 for binding of the DNA to the magnetic carriers and the final concentration of PEG in the separation mixture was 8 and 16 %. The aim was to gain the DNA of quality suitable for polymerase chain reaction (PCR). The DNA was isolated from the bacterial cultures of three probiotic strains, L. amylovorus CCM 4380T, L. zeae CCM 7069 T, L. plantarum CCM 7039T, which were cultivated in MRS medium. The DNA was also isolated from the fermented dairy products: Jihočeský zákys s ovocem jahoda (the fermented dairy product with the probiotic culture of Lactobacillus acidophilus, Bifidobacterium lactis and Streptococcus thermophilus), Revital active (the yogurt with inulin and the probiotic culture of Lactobacillus rhamnosus, Lactobacillus acidophilus and Bifidobacterium sp.) and Actimel višeň (the dairy product with the probiotic culture of Lactobacillus casei). When the PCR with the isolated DNA was passed off, the PCR products were detected by the gel electrophoresis with agarose. The success of the DNA isolation of the probiotic bacteria by phenol extraction, salting with NaCl and by magnetic separation, was verified by the PCR method. The method of magnetic separation using magnetic carriers was also verified for the isolation of DNA of quality suitable for PCR from the probiotic fermented dairy products.
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Implantable microelectrode biosensors for neurochemical monitoring of brain functioning / Microcapteurs implantables pour le suivi neurochimique de fonctionnement du cerveauVasylieva, Natalia 11 September 2012 (has links)
Les microcapteurs implantables sont des outils de choix pour l’étude du système nerveux central. Ils permettent d’analyser en temps réel la composition du milieu interstitiel du cerveau et les variations de concentration de neurotransmetteurs et de substrats métaboliques dans l’espace extracellulaire. La procédure d’immobilisation de l’enzyme sur l’électrode est une étape cruciale déterminant les performances du biocapteur. Nous avons développé une méthode d’immobilisation simple, non-toxique et peu chère en utilisant une molécule de poly(ethyleneglycol) diglycidyl éther (PEGDE) qui répond bien aux critères des applications cliniques. La méthode a été étudiée et optimisée sur trois enzyme: la Glucose oxydase, la D-amino acide oxydase et la Glutamate oxydase. Les capteurs développés se caractérisent par une forte sensibilité et un temps de réponse suffisamment court pour la détection des événements biologiques en temps réel. Les capteurs à base de PEGDE ont démontrés une bonne stabilité dans le temps et leur capacité de suivre en temps réel la variation de concentration de glucose dans le SNC du rat suite à l’injection d’insuline ou de glucose. Nous avons également adapté les méthodes d’immobilisation d’enzyme les plus utilisées dans le domaine des neurosciences: immobilisation par réticulation dans des vapeurs de Glutaraldéhyde ou par PEGDE, piégeage dans une matrice de sol-gel ou de polypyrrole dérivé, ou immobilisation dans une matrice d’hydrogel. Nous avons comparé les biocapteurs ainsi obtenus en termes de sensibilité, de stabilité in vivo, de temps de réponse et aussi de toxicité. Cette étude comparative nous a permis de conclure que le PEGDE représente un procédé d’immobilisation optimal car il ne demande pas de synthèse organique, contrairement à l’hydrogel, il n’est pas toxique contrairement au glutaraldehyde et il assure une immobilisation covalente plus stable que le piégeage dans des sol-gel ou polypyrrole. Cette étude comparative a mis également en évidence l’effet de la procédure de fixation de l’enzyme sur la spécificité du biocapteur. Nous avons montré que l’immobilisation par glutaraldehyde provoque une importante perte de sélectivité de l’enzyme. Quant au PEGDE, son immobilisation est assez douce pour préserver la spécificité naturelle de l’enzyme. Nous avons montré que la procédure d’immobilisation a un impact important sur la quantification des molécules dans les échantillons biologiques et in vivo. La validité des mesures sur nos capteurs a été contrôlée par HPLC ou électrophorèse capillaire. Nous avons également développé des sondes multisensibles en utilisant les techniques de microfabrication sur silicium. Le dispositif comporte une aiguille de 6mm en longueur, 100µm en largeur et 50 µm en épaisseur. Elle porte trois électrodes de taille 40x200µm. Ces dispositifs, optimisés pour réduire les effets d’interférence entre les électrodes, ont été pour le suivi simultané de glucose et lactate dans le SNC de rats anesthésiés. / Identification, monitoring and quantification of biomolecules in the CNS is a field of growing interest for identifying biomarkers of neurological diseases. In this thesis, silicon needle-shaped multi-molecules sensing microprobes were developed. Our microelectrode array design comprises a needle length of 6mm with 100x50 µm2 cross-section bearing three platinum electrodes with a size of 40x200 µm and 200µm spacing between them. We have used these microprobes for simultaneous glucose and lactate monitoring, using the third electrode for control of non-specific current variations. Local microdroplet protein deposition on the electrode surface was achieved using a pneumatic picopump injection system. Enzyme immobilization on the electrode surface is a key step in microelectrode biosensor fabrication. We have developed a simple, low cost, non-toxic enzyme immobilization method employing poly(ethyleneglycol) diglycidyl ether (PEGDE). Successful biosensor fabrication was demonstrated with glucose oxidase, D-amino acid oxidase, and glutamate oxidase. We found that these biosensors exhibited high sensitivity and short response time sufficient for observing biological events in vivo on a second-by-second timescale. PEGDE-based biosensors demonstrated an excellent long-term stability and reliably monitored changes in brain glucose levels induced by sequential administration of insulin and glucose solution. We then carried out a comparative study of five enzyme immobilization procedures commonly used in Neuroscience: covalent immobilization by cross-linking using glutaraldehyde, PEGDE, or a hydrogel matrix and enzyme entrapment in a sol-gel or polypyrrole-derived matrices. Enzymatic microelectrodes prepared using these different procedures were compared in terms of sensitivity, response time, linear range, apparent Michaelis-Menten constant, stability and selectivity. We conclude that PEGDE and sol-gel techniques are potentially promising procedures for in vivo laboratory studies. The comparative study also revealed that glutaraldehyde significantly decreased enzyme selectivity while PEGDE preserved it. The effects that immobilization can have on enzyme substrate specificity, produce dramatic consequences on glutamate detection in complex biological samples and in the CNS. Our biosensor’s results were systematically controlled by HPLC or capillary electrophoresis. The highly selective PEGDE-based biosensors allowed accurate measurements glutamate concentrations in the anesthetized and awaked rats at physiological conditions and under pharmacological and electrical stimulations. The microfabricated multielectrodes based on silicon needles coupled to the simple, non-toxic and mild immobilization method based on PEGDE, open new possibilities for specific neurotransmitter detection in the central nervous system and the study of cell-cell communication in vivo.
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Implantable microelectrode biosensors for neurochemical monitoring of brain functioningVasylieva, Natalia 11 September 2012 (has links) (PDF)
Identification, monitoring and quantification of biomolecules in the CNS is a field of growing interest for identifying biomarkers of neurological diseases. In this thesis, silicon needle-shaped multi-molecules sensing microprobes were developed. Our microelectrode array design comprises a needle length of 6mm with 100x50 µm2 cross-section bearing three platinum electrodes with a size of 40x200 µm and 200µm spacing between them. We have used these microprobes for simultaneous glucose and lactate monitoring, using the third electrode for control of non-specific current variations. Local microdroplet protein deposition on the electrode surface was achieved using a pneumatic picopump injection system. Enzyme immobilization on the electrode surface is a key step in microelectrode biosensor fabrication. We have developed a simple, low cost, non-toxic enzyme immobilization method employing poly(ethyleneglycol) diglycidyl ether (PEGDE). Successful biosensor fabrication was demonstrated with glucose oxidase, D-amino acid oxidase, and glutamate oxidase. We found that these biosensors exhibited high sensitivity and short response time sufficient for observing biological events in vivo on a second-by-second timescale. PEGDE-based biosensors demonstrated an excellent long-term stability and reliably monitored changes in brain glucose levels induced by sequential administration of insulin and glucose solution. We then carried out a comparative study of five enzyme immobilization procedures commonly used in Neuroscience: covalent immobilization by cross-linking using glutaraldehyde, PEGDE, or a hydrogel matrix and enzyme entrapment in a sol-gel or polypyrrole-derived matrices. Enzymatic microelectrodes prepared using these different procedures were compared in terms of sensitivity, response time, linear range, apparent Michaelis-Menten constant, stability and selectivity. We conclude that PEGDE and sol-gel techniques are potentially promising procedures for in vivo laboratory studies. The comparative study also revealed that glutaraldehyde significantly decreased enzyme selectivity while PEGDE preserved it. The effects that immobilization can have on enzyme substrate specificity, produce dramatic consequences on glutamate detection in complex biological samples and in the CNS. Our biosensor's results were systematically controlled by HPLC or capillary electrophoresis. The highly selective PEGDE-based biosensors allowed accurate measurements glutamate concentrations in the anesthetized and awaked rats at physiological conditions and under pharmacological and electrical stimulations. The microfabricated multielectrodes based on silicon needles coupled to the simple, non-toxic and mild immobilization method based on PEGDE, open new possibilities for specific neurotransmitter detection in the central nervous system and the study of cell-cell communication in vivo.
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Izolace DNA s použitím nově syntetizovaných magnetických nosičů / DNA isolation using newly designed magnetic carriersMachan, Radoslav January 2018 (has links)
Theoretical part of the master thesis was aimed on giving an overview of basic characteristics of magnetic particles, their morphology, basic methods of their synthesis, interaction with DNA and recent applications in biotechnology and biomedicine. The experimental part of thesis was aimed on application of new designed magnetic particles for isolation of both lactobacilli DNA and calf thymus DNA. Two types of magnetic beads were used: hyperbranched poly(glycidyl methacrylate-co-[2-(methacryloyloxy) ethoxy]acetic acid-co-ethylene dimethylacrylate) microbeads covered with amino groups (P(GMA-MOEAA-EDMA)-NH2) and magnetic non-porous poly(2-hydroxyethyl methacrylate) microbeads covered with carboxyl groups (P(HEMA-co-GMA)-COOH). For both types of microbeads two different protocols for preparation of separation mixtures with two different concentrations od poly(ethyleneglycol) 6000 (PEG 6000) as condensation agent were tested. Differences among both types of magnetic microbeads and DNAs used were found. It was shown that both types of microbeads are suitable for DNA isolation in the presence of 8% PEG 6000.
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