Thesis advisor: Daniel A. Kirschner / Reactive oxygen species (ROS) are implicated in a range of degenerative conditions, including aging, neurodegenerative diseases, and neurological disorders such as multiple sclerosis. Myelin is a lipid-rich multilamellar assembly that facilitates rapid nerve conduction in higher animals, and may be intrinsically vulnerable to oxidative damage given the high energetic demands and low antioxidant capacity of myelinating cells. To determine whether ROS can cause structural damage to internodal myelin, whole mouse sciatic and optic nerves were incubated ex vivo with a previously-characterized copper (Cu)/hydrogen peroxide (HP)/o-phenanthroline (OP)-based hydroxyl radical-generating system followed by quantitative determination of myelin packing by x-ray diffraction. Exposure to Cu/OP/HP-mediated ROS caused irreversible myelin decompaction in both sciatic and optic nerves. The addition of the hydroxyl radical scavenger, sodium formate, to the ROS-producing incubation solution significantly prevented sciatic nerve myelin decompaction, implicating hydroxyl radical species in causing the damage. Furthermore, Cu/OP/HP-mediated decompaction could be prevented by the addition of EDTA, which can compete with OP for Cu binding and sequester the metal within the bulk solution. These findings suggest that Cu/OP/HP-dependent myelin decompaction is caused by OP-mediated membrane-targeted hydroxyl radical production. Myelin membranes are particularly enriched in plasmalogen phospholipids, which have been linked to antioxidant activity; this enrichment may constitute an endogenous ROS-defense mechanism that protects ROS-vulnerable myelin tissue from damage. Intriguingly, it was found that sciatic nerve myelin from plasmalogen deficient (Pex7 KO) mice was significantly more susceptible to ROS-mediated decompaction than that from WT mice, supporting the role of plasmalogens as endogenous antioxidants. / Thesis (MS) — Boston College, 2009. / Submitted to: Boston College. Graduate School of Arts and Sciences. / Discipline: Biology.

Casos de malária no Brasil atingiu seu nível mais baixo em 35 anos e o Plasmodium vivax é responsável por 85% dos casos em todo o país. A vigilância epidemilógica da transmissão residual da malária persistente na Amazônia é o próximo grande desafio para os esforços vigentes de eliminação. Esta situação nos levou a avaliar uma estratégia para detecção de portadores do parasito (sintomáticos ou não) em áreas que se aproximam a eliminação da malária. Nossa hipótese é que o monitoramento sistemático de moradores de domicílios com um ou mais casos de malária vivax clínica confirmados pela vigilância passiva de rotina (referido como casos índices) e seus vizinhos tem um melhor custo-benecífio na identificação de novas infecções em relação aos inquéritos em massa da população em geral. Para testar essa hipótese, foram recrutados 41 casos índices (24 indivíduos classificados como autóctones, 11 como possíveis recaídas e, seis como casos importados), 163 moradores dos domicílios índices (indivíduos morando na mesma residência do caso índice), 878 moradores vizinhos (moradores de domicílios a um raio de < 3 km) e 841 controles (moradores da mesma localidade, porém a > 5 km de distância do domicílio índice) entre os meses de fevereiro a julho de 2013. Participantes residiam em comunidades rurais pertencentes a Acrelândia, onde o P. vivax é a única espécie implicada na transmissão da malária humana. Todos os participantes foram convidados a fornecerem amostra de sangue capilar para realização do diagnóstico para malária no momento de identificação do caso índice (dia 0), 30, 60 e 180 dias após a primeira visita. Em geral, 6028 análises por microscopia revelaram um aumento na prevalência de malária nos domicílios índices (6,1%; odds ratio [OR] = 36,3, P < 0,001) e vizinhos (2,6%; OR = 13,6, P < 0,001) comparados aos controles (0,1%). Não houve casos positivos para P. falciparum. Moradores dos domicílios índices e vizinhos foram associados com uma maior probabilidade de infecção pelo P. vivax em comparação com os indivíduos controles, após análise ajustada por potenciais confundidores (modelos de regressão logística para efeitos mistos), além desses participantes albergarem > 90% da biomassa parasitária circulante. Nos quatro seguimentos da RCD a microscopia identificou somente 49,5% das infecções diagnosticadas por qPCR, porém 76,8% do total da carga parasitária circulante nas proximidades do domicílio índice. Embora, moradores dos domicílios controles foram responsáveis por 27,6% das amostras positivas por qPCR, 92,6% desses indivíduos eram portadores assintomáticos da infecção, que provavelmente não seriam alvos da RCD. Tipagem molecular dos parasitos utilizando três marcadores polimórficos - msp1F3, MS16 e pv3.27 revelaram alta diversidade de P. vivax, consistente com a complexidade das vias de transmissão e múltiplas fontes de infecção dentro dos aglomerados, potenciais complicações para os programas de eliminação de malária. / Malaria burden in Brazil has reached its lowest levels in 35 years and Plasmodium vivax now accounts for 85% of cases countrywide. The epidemiological surveillance residual malaria transmission entrenched in the Amazon is the next major challenge for ongoing elimination efforts. This situation prompted us to evaluate a strategy for targeted detection of parasite carriers (either symptomatic or asymptomatic) in areas approaching malaria elimination. We hypothesize that repeated screening of households (HHs) with one or more slide-confirmed clinical vivax malaria cases diagnosed by routine passive surveillance (referred to as index cases) and their neighbors is more cost-effective for finding new malaria infections than population-wide mass blood surveys. To test this hypothesis, we recruited 41 index cases (24 subjects classified with indigenous, 11 possible relapsing and 6 cases imported) 163 index household members (subjects sharing the household with index cases), 878 neighbors (subjects living within a radius of up to 3 km from index cases) and 841 controls (subjects living in the same locality, but > 5 km from the index case) between January and July 2013. Study participants lived in rural communities surrounding Acrelândia town, where P. vivax is the only malaria parasite diagnosed in humans. They were invited to contribute finger-prick blood samples, for laboratory diagnosis of malaria, at the time of index case diagnosis (day 0) and 30, 60, and 180 days later. Overall, 6,028 microscopical analysis revealed an increased prevalence of infection in index households (6.1%; odds ratio [OR] = 36.3, P < 0.001) and neighbors (2.6%; OR = 13.6, P < 0.001) compared to controls (0.1%). There were no positive cases for P. falciparum. Subjects in index and neighbor households were significantly more likely to be parasitemic than control households members, after adjusting for potential confounders (mixed-effects logistic regression models), and together harbored > 90% of the P. vivax biomass in study subjects. Four rounds of microscopy-based RCD would identify only 49.5% of the infections diagnosed by qPCR, but 76.8% of the total parasite biomass circulating in the proximity of index HHs. However, control HHs accounted for 27.6% of qPCR-positive samples, 92.6% of them from asymptomatic carriers who were beyond the reach of RCD. Molecular genotyping analysis of parasites with three polymorphic molecular markers (msp1F3, MS16, and Pv3.27) revealed high P. vivax diversity, consistent with complex transmission networks and multiple sources of infection within clusters, potentially complicating malaria elimination efforts.

The annular cement sheath plays a crucial role in ensuring well integrity by providing adequate zonal isolation, stabilizing the formation, and protecting the casing from corrosion. A majority of well integrity problems originate from oil well cement shrinkage and shrinkage-induced cracking, as well as cracking induced by other external stresses. The addition of expansive additives is a commonly used way to compensate for shrinkage. Compared to conventional ettringite-based and CaO-based expansive additives, MgO has many advantages including a thermally stable hydration product, relatively low water requirements for hydration, and designable expansion properties. These make MgO a promising candidate for delivering the desired expansion under the complex and variable underground wellbore environment. Self-healing materials which have the capability for autonomous crack repair are an attractive solution for addressing cracking problems in oil well cement. Engineered additions of healing agents for autonomic self-healing via a delivery system have been reported as effective ways to promote self-healing in cementitious materials. Microcapsules that can be easily added to cement pastes and dispersed through the cement matrix are considered particularly suitable for use in oil well cement. This research project investigates the efficacy of reactive MgO expansive additives to reduce shrinkage, and of sodium silicate microcapsules to improve the self-healing properties of oil well cement, and explores the feasibility of their combined use in a high temperature oil well environment. Three types of reactive MgOs from different reactivity grades, high reactivity N50, medium reactivity MAG-R, and low reactivity 92/200, were characterised in terms of their expansion characteristics in cement paste prisms cured in water, and further tested on their autogenous shrinkage reduction at 80oC. The highly reactive N50 could only partially compensate for autogenous shrinkage, while the less reactive MAG-R and 92/200 completely compensated for autogenous shrinkage. MAG-R and 92/200 also showed effective drying shrinkage reduction at 90% RH. The restrained expansion of MAG-R and 92/200 during an early age was found to significantly improve the cracking resistance of oil well cement. The free expansion of 92/200, with low reactivity, caused significant strength reduction, but under restrained conditions the effect was mitigated as its compressive strength was enhanced by confined expansion. The addition of MAG-R increased compressive strength under both free and restrained conditions. Two groups of sodium silicate microcapsules, T1 with rigid polyurea shells and T2 with rubbery polyurea shells, were characterised in terms of their thermal stability, alkalinity resistance and survivability during cement mixing, and the results verified their suitability for use in oil well cement at the high temperature of 80 oC. The effects of the two types of microcapsules on the self-healing performance of oil well cement at 80 oC were monitored using a variety of techniques. Oil well cement itself showed very little healing capability when cured at 80 oC, but the addition of microcapsules significantly promoted its self-healing performance, showing reduced crack width and crack depth, enhanced tightness recovery against gas permeability and water sorptivity, as well as strength recovery. Microstructure analyses of the cracking surface further verified the successful release of the sodium silicate core and its reaction with the cement matrix to form C-S-H healing products. Both groups of microcapsules showed comparable self-healing efficiency. Their different shell properties mainly influenced the strength of oil well cement, with rigid shell microcapsules causing less strength reduction than rubbery shell microcapsules. The overall performance of oil well cement containing both reactive MgO and microcapsules were evaluated. The combined addition of MgO MAG-R and T1 microcapsules showed similar expansion performance and self-healing efficiency compared to their individual use. The use of MgO MAG-R compensated for the strength reduction caused by the addition of microcapsules, achieving an overall improvement in the cement strength.

Sepse é um importante problema de saúde pública, uma vez que seu tratamento gera altos custos a um sistema de saúde já sobrecarregado. É uma síndrome de alta mortalidade e morbidade que afeta, em geral, pacientes jovens com plena capacidade produtiva. A identificação e o tratamento precoce desta síndrome reduzem a morbimortalidade, assim como o custo. A proteína C reativa (PCR) e a procalcitonina (PCT) são bem estudadas como ferramentas para diagnóstico de infecção bacteriana em imunocompetentes, mas seu uso como ferramenta diagnóstica ainda não está estabelecido em pacientes imunossuprimidos. Portanto, a proposta deste estudo é avaliar a acurácia diagnóstica destes biomarcadores, em pacientes críticos imunossuprimidos (vírus da imunodeficiência adquirida  HIV positivos, portadores de tuberculose (TBC), cirróticos e transplantados). Como o uso da proteína C ainda não está estabelecido, a primeira questão de pesquisa investigou seu potencial diagnóstico quando comparado ao teste padrão (cultural). O segundo artigo comparou a PCR com a PCT. Para isto foram realizados dois artigos de revisão sistemática com metanálise. O primeiro artigo comparou a acurácia em determinar infecção bacteriana em imunossuprimidos da PCR ao teste padrão-ouro (as culturas). A primeira revisão incluiu 1.418 pacientes e demonstrou uma boa acurácia da PCR como biomarcador no diagnóstico de infecção bacteriana, apresentando sensibilidade de 69% e especificidade de 76% com uma área sob a curva (AUC) de 0,77. Os resultados encontrados são similares aos da literatura para imunocompetentes,(3) sensibilidade de 75%, especificidade de 67% e Área Sob a Curva Receiver Operating Characteristic (AUROC) de 0,92. Quando a PCT foi comparada com a PCR, ambos os biomarcadores mostraram acurácia moderada na utilização como ferrramenta de diagnóstico de infecção bacteriana, com um diagnóstico da razão de chances (DOR) de 7,24 (95% CI (2,83-14,60) para PCT e de 5,56 (95% CI (5,21-10,30) para PCR. A PCT e a PCR apresentaram sensibilidade de 69% e 68% e uma especificidade de 75% e 71%, respectivamente. Ambas mostraram resultados semelhantes, podendo ser utilizadas no diagnóstico de sepse em imunossupressos. / Sepsis is a major public health problem, since its treatment generates high costs, a health system already overburdened. A high mortality and morbidity syndrome affects, in general, young patients with full production capacity. The identification and early treatment of this syndrome reduce morbidity and mortality as well as the cost. C-reactive protein (CRP) and procalcitonin (PCT) are well studied as tools for diagnosis of bacterial infection in immunocompetent patients, but its use as a diagnostic tool is not yet established in immunocompromised patients. Therefore, the purpose of this study is to evaluate the diagnostic accuracy of these biomarkers in immunosuppresses critical patients (human immunodeficiency virus, cirrhotic and transplant). As the use of the c protein is not yet established, the first research question investigated their diagnostic potential when compared to the pattern (cultural). The second article compared to CRP and PCT. For this, there were two articles of a systematic review and meta-analysis. The first article compared the accuracy in determining bacterial infection in immunosuppresses of CRP to the gold standard (cultures). Our first review included 1,418 patients and showed good accuracy of CRP as a biomarker for the diagnosis of bacterial infection presenting a sensibility of 69% and 76% specificity with an area under the curve (AUC) 0.77. The results are similar to those found in the literature for immunocompetent,(3) sensitivity 75%, specificity of 67% and Area Under the Receiver Operating Characteristic Curve (AUROC): 0.92. When the PCT was compared with PCR, both biomarkers showed a moderately accurate for use as tool diagnostic bacterial infection with a Odds ratio diagnostic (DOR) 7.24 (95% CI (2.83-14.60) and PCT to 5:56 (95% CI (5.21-10.30) for CRP. the PCT and CRP had a sensitivity of 69% and 68% and a specificity of 75% and 71%, respectively. Both showed similar results may be used in the diagnosis of sepsis in immunosuppression.

Filmes finos de nitreto de silício com excesso de nitrogênio foram depositados sobre silício por sputtering reativo para obter estruturas emissoras de luz. As amostras foram modificadas por implantação iônica para verificar a influência dos dopantes arsênio (As) e boro (B) nos espectros de fotoluminescência (PL). As medidas de PL foram realizadas na faixa de temperatura entre 15-300 K e apresentaram uma emissão entre os comprimentos de onda 370-870 nm. Os dopantes introduziram uma emissão em 725 nm na banda de emissão, principalmente as dopadas com As. Foram realizadas medidas de microscopias para verificar a presença de nanoestruturas assim como a distribuição dos dopantes no material. As imagens de microscopias confirmaram a presença de nanocristais de nitreto de silício nas fases α, β e γ e identificaram a presença do dopante B nas fases cristalinas. O modelo de condução de Pool-Frenkel domina o transporte de portadores, indicando que a condução ocorre pelos níveis intrabandas, característica que definiu o modo que as recombinações radiativas ocorreram. As medidas de eletroluminescência (EL) apresentaram uma emissão centrada nos comprimentos de onda 760 e 880 nm (polarização negativa) e 1010 nm (polarização positiva) revelando diferenças significativas quando comparadas com as medidas de PL. Essa diferença esta associada à maneira como os elétrons populam os níveis intrabanda (excitação óptica para PL e elétrica para EL) que resulta em recombinações radiativas em diferentes comprimentos de ondas. A intensidade dos espectros de EL manifestou uma dependência quase linear com a densidade de corrente para ambas as polarizações. As medidas de EL em campos alternados exibiram um espectro de emissão composto pela soma das bandas obtidas separadamente em cada uma das polarizações. Medidas de EL em diferentes temperaturas (50-300 K) foram realizadas para investigar a influência da temperatura nos processos de recombinação radiativa. A intensidade exibiu uma redução com o aumento da temperatura, devido ao aumento do acoplamento elétron-fônon. / Silicon nitride with excess of nitrogen thin films were deposited on silicon substrate by reactive sputtering in order to obtain light emitting structures. Samples were modified by ion implantation of arsenic (As) and boron (B) to ascertain dopant leverage at photoluminescence (PL) spectra. PL measurements were performed at temperature ranging from 15 K up to 300 K and showed a band emission between wavelength 370 and 870 nm. An emission centered at 725 nm was observed in doped samples; especially in the presence of As. Microscope images showed crystalline structures of α-Si3N4, β-Si3N4 and γ-Si3N4 and confirmed boron dopant in nanocrystalline structures. Pool-Frenkel conduction model dominates electron transport in non-stoichiometric silicon nitride films due to intraband levels, phenomenon that has a huge contribution to electroluminescence (EL) emission. EL signals were composed by two peaks centered at 760 and 880 nm (negative bias – EL-N) and one peak at 1010 nm (positive bias – EL-P). Diffences between PL and EL spectra exhibit a clear dependence on the mode of excitation (photo and current source) on radiative recombination process. EL intensity had almost a linear increase with current density for both polarizations. EL measurements under AC voltage were composed by a superposition of the signals from EL-N and EL-P signals. Photo and electroluminescence measurements were collected at different temperatures (50 to 300 K) in order to investigate the temperature influence on the radiative recombination. The EL intensity was decreasing with temperature increasing, due to electron-phonon interactions.

Les matériaux composites connaissent un large succès. En effet les Composites à Matrice Céramique (CMC) fonctionnant à haute température ont des performances inégalées en termes de fatigue thermomécanique. La durée de vie des CMC est pourtant limitée en raison de l'apparition précoce de fissures matricielles, ouvrant autant de portes à des environnements agressifs, entraînant un abattement prématuré des propriétés mécaniques. Arriver à retarder la fissuration matricielle devient donc une étape clé pour une future importante utilisation des CMC dans l'aéronautique ou l'aérospatial. Les travaux de cette thèse se sont inscrits dans cette logique, où pour protéger les fibres et l'interphase de l'oxydation et de la corrosion, les propriétés de la matrice céramique ont tenté d'être modifiées par l'incorporation de nanofibres en leur sein et par l'émoussement de leurs macropores résiduels. / Abstract

A produção de mantas de tecido não tecido (TNT) por processo de extrusão a partir do poli(tereftalato de etileno) (PET) reciclado é uma forma interessante de reciclagem de polímeros adotada pela indústria que consegue conciliar viabilidade econômica com benefícios ambientais. Entretanto, durante a etapa de extrusão, muito material é perdido devido a entupimentos do equipamento ou outros motivos que acarretam na geração de uma quantidade considerável de rejeitos que não podem ser reaproveitados no sistema, devido à depreciação de propriedades ocorridas no material durante o processamento, levando ao descarte deste material geralmente em aterros sanitários. Neste trabalho foi feito um estudo sobre a reciclagem de rejeitos de PET das linhas de produção de mantas de tecido não tecido (TNT), adotando aditivos do tipo extensores de cadeia, para recuperar as propriedades que haviam sofrido grande depreciação. A incorporação de extensores de cadeia do tipo anidridos, isocianatos e fosforados, por meio de extrusão reativa, proporcionou melhorias consideráveis nas propriedades químicas, mecânicas e reológicas do rejeito de PET como aumento de massa molar, aumento de iscosidade no fundido e resistência à tração, facilitando o processamento e favorecendo a utilização do rejeito em novas etapas de reciclagem mecânica. Para as indústrias, a possibilidade de converter custos relacionados às operações de descarte de rejeitos em lucros com a agregação de valor a estes rejeitos poliméricos é extremamente interessante. Da mesma forma, a diminuição do volume de materiais poliméricos depositados no meio ambiente significa menos poluição e menos contaminação a diversos ecossistemas, apoiando os esforços que estão sendo feitos para a preservação e redução de poluentes na natureza. / The production of nonwoven fabrics (NWF) by extrusion process from recycled poly(ethylene terephthalate) (PET) is an interesting way for polymer recycling used by industry which to allow conciliate economic viability with environmental benefits. However, during extrusion step, a fraction of material is lost due to equipment clogging or others factors, leading to production of considerable amount of wastes which can not reinserted in system, due to the depreciation of material properties that occurs during thermal-mechanical processing. These rejects are generally deposited in land wastes. In this work was carried out a study about recycling of PET wastes from NWF production lines, using additives of chain extender kind to recoup properties that had been highly depreciated. The incorporation of chain extenders of kind anhydride, isocyanate and phosphorous compounds by reactive extrusion improved considerably some chemical, mechanical and rheological properties of PET waste such as increase in molecular weight, melt viscosity and strain strength, easing the thermal-mechanical processing and making possible the use of PET waste in news steps of mechanical recycling. The possibility to convert expenditures with wastes discarding operations into profits due to the values aggregation on these polymeric wastes is very interesting for the industries. Then, the decrease of amount of polymeric materials deposited in natural environment signifies less contamination to several ecosystems, supporting the works that have been realized to decrease pollutants and to preserve the nature.

Emerging technologies enable a set of distributed resources across a network to be linked together and used in a coordinated fashion to solve a particular parallel application at the same time. Such applications are often abstracted as directed acyclic graphs (DAGs), in which vertices represent application tasks and edges represent data dependencies between tasks. Effective scheduling mechanisms for DAG applications are essential to exploit the tremendous potential of computational resources. The core issues are that the availability and performance of resources, which are already by their nature heterogeneous, can be expected to vary dynamically, even during the course of an execution. In this thesis, we first consider the problem of scheduling DAG task graphs onto heterogeneous resources with changeable capabilities. We propose a list-scheduling heuristic approach, the Global Task Positioning (GTP) scheduling method, which addresses the problem by allowing rescheduling and migration of tasks in response to significant variations in resource characteristics. We observed from experiments with GTP that in an execution with relatively frequent migration, it may be that, over time, the results of some task have been copied to several other sites, and so a subsequent migrated task may have several possible sources for each of its inputs. Some of these copies may now be more quickly accessible than the original, due to dynamic variations in communication capabilities. To exploit this observation, we extended our model with a Copying Management(CM) function, resulting in a new version, the Global Task Positioning with copying facilities (GTP/c) system. The idea is to reuse such copies, in subsequent migration of placed tasks, in order to reduce the impact of migration cost on makespan. Finally, we believe that fault tolerance is an important issue in heterogeneous and dynamic computational environments as the availability of resources cannot be guaranteed. To address the problem of processor failure, we propose a rewinding mechanism which rewinds the progress of the application to a previous state, thereby preserving the execution in spite of the failed processor(s). We evaluate our mechanisms through simulation, since this allow us to generate repeatable patterns of resource performance variation. We use a standard benchmark set of DAGs, comparing performance against that of competing algorithms from the scheduling literature.

Nitric oxide (NO) as well as reactive oxygen species (ROS) play an important role in defence signalling in plants. After successful recognition of an invading pathogen, an increase in ROS occurs, the ’oxidative burst’; and a ’nitrosative burst’ is also observed. This leads to the induction of defence responses, including the ’hypersensitive response’ (HR), a form of programmed cell death. A balanced production of hydrogen peroxide and NO is crucial for HR induction. In a process called S-nitrosylation, NO can react with cysteine thiols to form S-nitrosothiols, or react with glutathione to form S-nitrosoglutathione (GSNO). The enzyme GNSO reductase (GSNOR) indirectly regulates SNO levels by turning over GNSO. The Arabidopsis thaliana T-DNA insertion mutant atgsnor1-3 shows a complete loss of GNSOR activity and has drastically increased SNO levels, resulting in stunted growth, loss of apical dominance, increased HR, loss of salicylic acid (SA) accumulation and increased susceptibility to avirulent, virulent and non-host pathogens. Two recessive and allelic EMS suppressor mutants in the atgsnor1-3 background were isolated, which showed mostly wild type growth. The mutations were identified by map-based cloning as two different point mutations in At1g20620 or CAT3, one of three catalase genes in Arabidopsis. Catalases break down hydrogen peroxide, with CAT2 being the major catalase in Arabidopsis. All three catalases are structurally very similar, but show temporal and spatial differences in their expression patterns. The suppressor mutants recovered apical dominance, and partially recovered disease resistance to avirulent pathogens, but were still susceptible to virulent pathogens and showed decreased SA levels. The suppressor mutants showed wild type HR in response to different avirulent bacteria. Interestingly, loss-of-function of the other catalase genes as well as loss-of-function of other redox-related genes did not restore apical dominance of atgnsor1-3 plants. This effect seems to be highly specific to CAT3, possibly because of its expression pattern or its expression levels. Further research is needed to fully understand the mechanisms at work here, but these results certainly seem to show a direct connection between redox signalling and S-nitrosylation.

Despite the actions of central tolerance during thymic selection, it is clear that the peripheral T cell repertoire contains significant numbers of self-reactive T cells. The immune system needs to curtail the risk of autoimmune disease by controlling the activity of these self-reactive T cells. Various mechanisms are in place to achieve this control (peripheral tolerance). Activation of CD4+ T cells requires two signals; engagement of the T cell receptor (TCR) with an appropriate peptide:MHC complex (signal 1), and the aggregate effect of multiple signals generated following ligation of costimulatory and coinhibitory molecules (signal 2). Both signals are required for the generation of a productive T cell response and both are provided by the professional antigen presenting cell, the dendritic cell (DC). T cells are fully activated upon receiving both signal 1 and 2, but are rendered tolerant when they receive only signal 1. This can be exploited therapeutically through the administration of peptides to induce tolerance in peptidereactive T cells. Administration of peptide with an adjuvant provides both signal 1 and 2, and leads to a sustained T cell response against the administered peptide (immunity). However, if the same peptide is administered in soluble form, only signal 1 is provided, leading to the establishment of T cell tolerance. The studies in this thesis explore the role of both signal 1 and signal 2 in peptide-induced T cell tolerance. Previous data from our laboratory have highlighted PD-1 and RANKL as costimulatory molecules which could play a role in peptide-induced T cell tolerance. Here we show that PD-1, an important coinhibitory molecule, plays a vital role in restraining peripheral T cell expansion under conditions leading to T cell immunity. However, in contrast to data from other studies, we demonstrate that PD-1 plays no role in the induction, establishment or maintenance of peptide-induced T cell tolerance. We show that the costimulatory receptor ligand pair RANK:RANKL plays a role in the balance between T cell tolerance and immunity; as administration of anti-RANKL was seen to potentiate both tolerance and immunity. We also explored the effect of altering the affinity of a peptide for MHC on the induction of peptide tolerance. We demonstrate that use of a peptide with a high-affinity for MHC induces tolerance via a novel, non-deletional mechanism of peptide-tolerance induction. Importantly, we show that the high-affinity peptide can form peptide- MHC complexes which persist in a biologically relevant form for fourteen days following peptide administration. We suggest that this leads to chronic stimulation of peptide-reactive T cells which promotes acquisition of a novel tolerant phenotype. Collectively the work described in this thesis demonstrates the important roles both signal 1 and 2 play in therapeutic-tolerance induction and how the qualitative and quantitative alteration of these signals can alter T cell fate and/or responsiveness.