This master's thesis describes the problems of SELinux, and the methods of creation of a proper security policy with a focus on the SELinux reference policy and its mechanisms. It designs the methodics of formulation of specific security rules, supplemented with the practical example of its application. Furthermore, it describes the available security rules commonly used for http, ftp and ssh services securing, their modification and practical utilization. According to the proposed methodology, these services are protected with their own security rules and both security methods are mutually compared and evaluated.