Satellite observations provide information on land surface processes over a large spatial extent with a frequency dependent on the satellite revisit time. These observations are not subject to the spatial limitations of the traditional point measurements and are usually collected in a global scale. With a reasonable spatial resolution and temporal frequency, the Moderate Resolution Imaging Spectroradiometer (MODIS) is one of these satellite sensors which enables the study of land-atmospheric interactions and estimation of climate variables for over a decade from remotely sensed data. This research investigated the potential of remotely sensed land surface temperature (LST) data from MODIS for air temperature (Ta) and soil moisture (SM) estimation in New Zealand and how the satellite derived parameters relate to the numerical model simulations and the in-situ ground measurements. Additionally, passive microwave SM product from the Advanced Microwave Scanning Radiometer for the Earth Observing System (AMSR-E) was applied in this research. As the first step, the MODIS LST product was validated using ground measurements at two test-sites as reference. Quality of the MODIS LST product was compared with the numerical simulations from the Weather Research and Forecasting (WRF) model. Results from the first validation site, which was located in the alpine areas of the South Island, showed that the MODIS LST has less agreement with the in-situ measurements than the WRF model simulations. It turned out that the MODIS LST is subject to sources of error, such as the effects of topography and variability in atmospheric effects over alpine areas and needs a careful pre-processing for cloud effects and outliers. On the other hand, results from the second validation site, which was located on the flat lands of the Canterbury Plains, showed significantly higher agreement with the ground truth data. Therefore, ground measurements at this site were used as the main reference data for the accuracy assessment of Ta and SM estimates. Using the MODIS LST product, Ta was estimated over a period of 10 years at several sites across New Zealand. The main question in this part of the thesis was whether to use LST series from a single MODIS pixel or the series of a spatially averaged value from multiple pixels for Ta estimation. It was found that the LST series from a single pixel can be used to model Ta with an accuracy of about ±1 ºC. The modelled Ta in this way showed r ≈ 0.80 correlation with the in-situ measurements. The Ta estimation accuracy improved to about ±0.5 ºC and the correlation to r ≈ 0.85 when LST series from spatially averaged values over a window of 9x9 to 25x25 pixels were applied. It was discussed that these improvements are due to noise reduction in the spatially averaged LST series. By comparison of LST diurnal trends from MODIS with Ta diurnal trends from hourly measurements in a weather station, it was shown that the MODIS LST has a better agreement with Ta measurements at certain times of the day with changes over day and night. After estimation of Ta, the MODIS LST was applied to derive the near-surface SM using two Apparent Thermal Inertia (ATI) functions. The objective was to find out if more daily LST observations can provide a better SM derivation. It was also aimed to identify the potential of a land-atmospheric coupled model for filling the gaps in derived SM, which were due to cloud cover. The in-situ SM measurements and rainfall data from six stations were used for validation of SM derived from the two ATI functions and simulated by the WRF model. It was shown that the ATI function based on four LST observations has a better ability to derive SM temporal profiles and is better able to detect rainfall effects. Finally, the MODIS LST was applied for spatial and temporal adjustment of the near-surface SM product from AMSR-E passive microwave observations over the South Island of New Zealand. It was shown that the adjustment technique improves AMSR-E seasonal trends and leads to a better matching with rainfall events. Additionally, a clear seasonal variability was observed in the adjusted AMSR-E SM in the spatial domain. Findings of this thesis showed that the satellite observed LST has the potential for the estimation of the land surface variables, such as the near-surface Ta and SM. This potential is greatly important on remote and alpine areas where regular measurements from weather stations are not often available. According to the results from the first validation site, however, the MODIS LST needs a careful pre-processing on those areas. The concluding chapter included a discussion of the limitations of remotely sensed data due to cloud cover, dense vegetation and rugged topography. It was concluded that the satellite observed LST has the potential for SM and Ta estimations in New Zealand. It was also found that a land-atmospheric model (such as the WRF coupled with the Noah and surface model) can be applied for filling the gaps due to cloud cover in remotely sensed variables.

This cumulative dissertation explored the use of the detection of natural background of fast neutrons, the so-called cosmic-ray neutron sensing (CRS) approach to measure field-scale soil moisture in cropped fields. Primary cosmic rays penetrate the top atmosphere and interact with atmospheric particles. Such interaction results on a cascade of high-energy neutrons, which continue traveling through the atmospheric column. Finally, neutrons penetrate the soil surface and a second cascade is produced with the so-called secondary cosmic-ray neutrons (fast neutrons). Partly, fast neutrons are absorbed by hydrogen (soil moisture). Remaining neutrons scatter back to the atmosphere, where its flux is inversely correlated to the soil moisture content, therefore allowing a non-invasive indirect measurement of soil moisture. The CRS methodology is mainly evaluated based on a field study carried out on a farmland in Potsdam (Brandenburg, Germany) along three crop seasons with corn, sunflower and winter rye; a bare soil period; and two winter periods. Also, field monitoring was carried out in the Schaefertal catchment (Harz, Germany) for long-term testing of CRS against ancillary data. In the first experimental site, the CRS method was calibrated and validated using different approaches of soil moisture measurements. In a period with corn, soil moisture measurement at the local scale was performed at near-surface only, and in subsequent periods (sunflower and winter rye) sensors were placed in three depths (5 cm, 20 cm and 40 cm). The direct transfer of CRS calibration parameters between two vegetation periods led to a large overestimation of soil moisture by the CRS. Part of this soil moisture overestimation was attributed to an underestimation of the CRS observation depth during the corn period ( 5-10 cm), which was later recalculated to values between 20-40 cm in other crop periods (sunflower and winter rye). According to results from these monitoring periods with different crops, vegetation played an important role on the CRS measurements. Water contained also in crop biomass, above and below ground, produces important neutron moderation. This effect was accounted for by a simple model for neutron corrections due to vegetation. It followed crop development and reduced overall CRS soil moisture error for periods of sunflower and winter rye. In Potsdam farmland also inversely-estimated soil hydraulic parameters were determined at the field scale, using CRS soil moisture from the sunflower period. A modelling framework coupling HYDRUS-1D and PEST was applied. Subsequently, field-scale soil hydraulic properties were compared against local scale soil properties (modelling and measurements). Successful results were obtained here, despite large difference in support volume. Simple modelling framework emphasizes future research directions with CRS soil moisture to parameterize field scale models. In Schaefertal catchment, CRS measurements were verified using precipitation and evapotranspiration data. At the monthly resolution, CRS soil water storage was well correlated to these two weather variables. Also clearly, water balance could not be closed due to missing information from other compartments such as groundwater, catchment discharge, etc. In the catchment, the snow influence to natural neutrons was also evaluated. As also observed in Potsdam farmland, CRS signal was strongly influenced by snow fall and snow accumulation. A simple strategy to measure snow was presented for Schaefertal case. Concluding remarks of this dissertation showed that (a) the cosmic-ray neutron sensing (CRS) has a strong potential to provide feasible measurement of mean soil moisture at the field scale in cropped fields; (b) CRS soil moisture is strongly influenced by other environmental water pools such as vegetation and snow, therefore these should be considered in analysis; (c) CRS water storage can be used for soil hydrology modelling for determination of soil hydraulic parameters; and (d) CRS approach has strong potential for long term monitoring of soil moisture and for addressing studies of water balance. / In dieser kumulativen Dissertation wird die Detektion des natürlichen Hintergrunds von schnellen Neutronen, das sogenannte “Cosmic-Ray Neutron Sensing” (CRS), zur Messung von Bodenfeuchte auf der Feldskala in landwirtschaftlich genutzten Flächen untersucht. Die kosmische Primärstrahlung durchdringt die oberste Atmosphäre, und interagiert mit atmosphärischen Teilchen. Durch diese Wechselwirkungen entstehen Kaskaden hochenergetischer Teilchen die bis in die Erdoberfläche eindringen, wobei schnelle Neutronen entstehen. Teilweise werden diese durch Wasserstoff (Bodenfeuchte) absorbiert, teilweise zurück in die Atmosphäre gestreut. Dieser Neutronenfluss über dem Boden korreliert invers mit der Bodenfeuchte, was so eine non-invasive und indirekte Bodenfeuchteschätzung ermöglicht. Die CRS-Methode wird vor allem in einer Feldstudie auf einem Ackerland in Potsdam (Brandenburg, Deutschland), einschließlich dreier Phasen mit Anbau von Mais, Sonnenblume und Winterroggen getestet und beurteilt. Darüber hinaus wurde ein Feldmonitoring im Schäfertaleinzugsgebiet (Harz, Deutschland) durchgeführt, um das Potential von Langzeit-CRS-Messungen gegenüber herkömmlich erhobenen bodenhydraulischen Daten abzuschätzen. Im ersten Untersuchungsgebiet wurde die CRS-Methode kalibriert und mittels verschiedener Bodenfeuchtemessansätze validiert. In der Maisanbauphase wurden die Bodenfeuchte-Punktmessungen zunächst nur an der nahen Bodenoberfläche durchgeführt. In den folgendenen Anbauphasen (Sonnenblume und Winterroggen) wurden dann die Sensoren in drei unterschiedlichen Tiefen (5 cm, 20 cm und 40 cm) installiert. Die direkte Übertragung der CRS-Kalibrierparameter zwischen zwei Vegetationsperioden führte zu einer starken Überschätzung der CRS-Bodenfeuchte. Ein Teil der überschätzten Bodenfeuchte wurde der Unterschätzung der CRS-Beobachtungstiefe während der Maisperiode (5-10 cm) zugeschrieben, welche später basierend auf Werten zwischen 20-40 cm in anderen Anbauperioden (Sonnenblume und Winterroggen) neuberechnet wurde. Gemäß der Ergebnisse dieser Beobachtungsperioden mit verschiedenen Feldfrüchten, spielte die Vegetation eine wichtige Rolle für die CRS-Messungen, da das Wasser, das in der über- und unterirdischen Biomasse vorhanden ist, die Neutronen bedeutend abdämpft. Dieser Effekt, sowie der Einfluss des Getreidewachstums und des reduzierten Gesamt-CRS-Bodenfeuchte-Fehlers, wurden in ein einfaches Model zur vegetationsbedingten Neutronenkorrektur berücksichtigt. So wurde ein gekoppelter HYDRUS-1D- und PEST-Ansatz angewendet, um bodenhydraulische Parameter auf dem Feldmassstab während der Sonnenblumen-Phase invers abzuschätzen. Dann wurden die inversen Schätzungen der effektiven bodenhydraulischen Eigenschaften innerhalb des von CRS beobachteten Volumens durch die lokalen Bodeneigenschaften (Modellierung und Messungen) validiert. Abgesehen von Unterschieden auf Grund der Beobachtungstiefe und somit des Volumens, wurden hierbei erfolgreiche Ergebnisse erzielt. Dieser einfache Ansatz unterstreicht das zukünftige Forschungspotential, z.B. um mit Hilfe von Bodenfeuchten aus CRS-Messungen Modelle auf der Feldskala zu parametrisieren. Im Schäfertaleinzugsgebiet wurden die Langzeit-CRS-Messungen mit Nie-derschlags- und Evapotranspirations-Raten abgeglichen. Bei einer monatlichen Auflösung korrelierte die Änderung des CRS-Bodenwasserspeichers mit diesen beiden Wettervariablen. Die Wasserbilanz konnte jedoch auf Grund fehlender Informationen bezüglich Grundwasser, Abfluss des Einzugesgebiets, etc. nicht geschlossen werden. Darüber hinaus wurde, wie auch am Potsdamer Standort, festgestellt, dass das CRS-Signal stark von Schneefall und Schneeakkumulationen beeinflusst wird. Eine einfache Anwendung zur Schneemessung mittels CRS wurde für den Schäfertalfall vorgestellt. Abschließend zeigte sich, dass (a) „Cosmic-Ray Neutron Sensing“ (CRS) ein großes Potential hat, Messungen der mittleren Bodenfeuchte auf der Feldskala im Bereich landwirtschaftlich genutzter Flächen zu realisieren; (b) die CRS-Bodenfeuchte stark durch andere Wasserspeicher, wie Vegetation und Schnee beeinflusst wird, und dies im Rahmen von Analysen berücksichtigt werden sollte; (c) die CRS-Messungen über eine bodenhydraulische Modellierung zur Bestimmung von bodenhydraulischen Paramtern genutzt werden kann; und (d) der CRS-Ansatz ein großes Potential für Langzeit-Bodenfeuchte-Monitoring und für Wasserbilanzstudien hat.

A study was conducted in 2004 and 2005 to determine the effect of liquid hog manure fertilization on greenhouse gas emissions from the surface of a grassland pasture in south-eastern Manitoba. The objectives of this research were to determine the effects of manure application, itstiming and soil moisture on greenhouse gas emissions from pasture soil, cattle dung and urine patches. Nitrous oxide (N2O), methane (CH4) and carbon dioxide (CO2) emissions were determined from grassland soil surface, and from cattle dung and artificial urine patches. Liquid hog manure treatments were no manure (Control); 153 kg ha-1 of available-nitrogen (N) (two year average) in spring (Spring); and 149 kg ha-1 as half-rate applications in fall and spring (Split). Four field experiments were conducted on grassland plots. The static-vented chamber technique was used to estimate gas emission rates. Two of the experiments focused on the effects of manure application timing and soil moisture on greenhouse gas emissions from the grassland soil surface. The other two experiments focused on the effects of manure application and soil moisture on greenhouse gas emissions from cattle dung and artificial urine patches. Fresh cattle dung was collected from steers grazing adjacent pastures receiving the same three manure treatments. Artificial cattle urine treatments were generated by converting blood urea concentrations of the steers into urine-N concentrations. Manure application increased (P≤0.01) cumulative N2O emissions from the grassland soil surface with Control, Split and Spring treatments averaging 7, 43 and 120 mg N2O-N m-2, respectively. Of the two manure treatments, the Spring treatment emitted higher (P≤0.10) N2O emissions than the Split treatment. Soil moisture was a major factor influencing the quantity and type of greenhouse gas emissions, with saturated areas emitting CH4 during warm periods, whereas drier areas emitted N2O. Nitrous oxide emissions from these dry areas were higher in manure-treated plots. Spring application increased root density by 45% in the top 5 cm of soil compared to the Control. An increase in soil organic carbon with root density may offset any increase in greenhouse gas emissions caused by manure treatment. Cattle dung from Split and Spring treatments had higher cumulative N2O emissions (30 and 82 mg N2O-N m-2, respectively) compared to dung from Control pastures (6 mg N2O-N m-2) over two study years. Dung from the Spring treatment emitted more N2O (P≤0.01) than the other two treatments. All cattle dung patches emitted CH4 after deposition though unaffected by manure treatment. Artificial urine having highest N concentration had greater (P≤0.05) cumulative N2O emissions (690 mg N2O-N m-2) than urine with the lowest N concentration (170 mg N2O-N m-2). Drier soil locations emitted more N2O from cattle dung and artificial urine patches than wetter areas. This study demonstrated that Split application of liquid hog manure to grassland emitted less N2O than a complete application in spring. Moisture greatly affected the location of N2O and CH4 emissions. Drier areas emitted more N2O than wetter ones. Particularly, the findings indicate a need to assess grassland on periodically saturated soils as sources rather than sinks for CH4. Application of manure increased greenhouse gas emissions from cattle dung and urine patches with urine potentially having the greatest impact because of their higher emissions of N2O. An increase in root growth seems to offset greenhouse gas emissions from manure application.

Near-surface sediments in the vadose zone play a fundamental role in the hydrologic system. The shallow vadose zone can act as a buffer to delay or attenuate surface contaminants before they reach the water table. It also acts as a temporary soil moisture reservoir for plant and atmospheric uptake, and regulates the seasonal groundwater recharge process. Over the past few decades, geophysical methods have received unprecedented attention as an effective vadose zone characterization tool offering a range of non-invasive to minimally invasive techniques with the capacity to provide detailed soil moisture information at depths typically unattainable using conventional point-measurement sensors. Ground-penetrating radar (GPR) has received much of this attention due to its high sensitivity to the liquid water phase in geologic media. While much has been learned about GPR soil moisture monitoring and characterization techniques, it has not been evaluated across highly dynamic natural soil conditions. Consequently, GPR’s capacity to characterize a complete range of naturally occurring vadose zone conditions including wetting/drying and freeze/thaw cycles, is not yet fully understood. Further, the nature of GPR response during highly dynamic moisture periods has not been thoroughly investigated. The objective of this thesis is to examine the capacity of various surface GPR techniques and methodologies for the characterization of soil moisture dynamics in the upper few meters of vadose zone, and to develop measurement strategies capable of providing quantitative information about the current and future state of the shallow hydrologic system. To achieve this, an exhaustive soil moisture monitoring campaign employing a range of GPR antenna frequencies and survey acquisition geometries was initiated at three different agricultural field sites located in southern Ontario, Canada, between May 2006 and October 2008. This thesis represents the first attempt to evaluate multiple annual cycles of soil conditions and associated hydrological processes using high-frequency GPR measurements. Summaries of the seven major works embodied in this thesis are provided below. Direct ground wave (DGW) measurements obtained with GPR have been used in a number of previous studies to monitor volumetric water content changes in the root zone; however, these studies have involved controlled field experiments or measurements collected across limited ranges in soil moisture. To further investigate the capacity of the DGW method, multi-frequency (i.e., 225 MHz, 450 MHz and 900 MHz) common-midpoint (CMP) measurements were used to monitor a complete annual cycle of soil water content variations at three sites with different soil textures (i.e., sand, sandy loam and silt loam). CMP surveys permitted characterization of the nature and evolution of the near-surface electromagnetic wavefields, and their subsequent impact on DGW velocity measurements. GPR results showed significant temporal variations in both the near-surface wavefield and multi-frequency DGW velocities corresponding to both seasonal and shorter term variations in soil conditions. While all of the measurement sites displayed similar temporal responses, the rate and magnitude of these velocity variations corresponded to varying soil water contents which were primarily controlled by the soil textural properties. Overall, the DGW measurements obtained using higher frequency antennas were less impacted by near-surface wavefield interference due to their shorter signal pulse duration. The estimation of soil water content using GPR velocity requires an appropriate petrophysical relationship between the dielectric permittivity and volumetric water content of the soil. The ability of various empirical relationships, volumetric mixing formulae and effective medium approximations were evaluated to predict near-surface volumetric soil water content using high-frequency DGW velocity measurements obtained from CMP soundings. Measurements were collected using 225, 450 and 900 MHz antennas across sand, sandy loam and silt loam soil textures over a complete annual cycle of soil conditions. A lack of frequency dependence in the results indicated that frequency dispersion had minimal impact on the data set. However, the accuracy of soil water content predictions obtained from the various relationships ranged considerably. The best fitting relationships did exhibit some degree of textural bias that should be considered in the choice of petrophysical relationship for a given data set. Further improvements in water content estimates were obtained using a field calibrated third-order polynomial relationship and three-phase volumetric mixing formula. While DGW measurements provide valuable information within the root zone, the characterization of vertical moisture distribution and dynamics requires a different approach. A common approach utilizes normal-moveout (NMO) velocity analysis of CMP sounding data. To further examine this approach, an extensive field study using multi-frequency (i.e., 225 MHz, 450 MHz, 900 MHz) CMP soundings was conducted to monitor a complete annual cycle of vertical soil moisture conditions at the sand, sandy loam and silt loam sites. The use of NMO velocity analysis was examined for monitoring highly dynamic vertical soil moisture conditions consisting of wetting/drying and freeze/thaw cycles with varying degrees of magnitude and vertical velocity gradient. NMO velocity analysis was used to construct interval-velocity-depth models at a fixed location collected every 1 to 4 weeks. Time-lapse models were combined to construct temporal interval-velocity fields, which were converted into soil moisture content. These moisture fields were used to characterize the vertical distribution, and dynamics of soil moisture in the upper few meters of vadose zone. Although the use of multiple antenna frequencies provided varying investigation depths and vertical resolving capabilities, optimal characterization of soil moisture conditions was obtained with 900 MHz antennas. The integration of DGW and NMO velocity data from a single CMP sounding could be used to assess the nature of shallow soil moisture coupling with underlying vadose zone conditions; however, a more quantitative analyses of the surface moisture dynamics would require definitive knowledge of GPR sampling depth. Although surface techniques have been used by a number of previous researchers to characterize soil moisture content in the vadose zone, limited temporal sampling and low resolution near the surface in these studies impeded the quantitative analysis of vertical soil moisture distribution and its associated dynamics within the shallow subsurface. To further examine the capacity of surface GPR, an extensive 26 month field study was undertaken using concurrent high-frequency (i.e., 900 MHz) reflection profiling and CMP soundings to quantitatively monitor soil moisture distribution and dynamics within a sandy vadose zone environment. An analysis on the concurrent use of reflection and CMP measurements was conducted over two contrasting annual cycles of soil conditions. Reflection profiles provided high resolution traveltime data between four stratigraphic reflection events while cumulative results of the CMP sounding data set produced precise depth estimates for those reflecting interfaces, which were used to convert interval traveltime data into soil water content estimates. The downward propagation of episodic infiltration events associated with seasonal and transient conditions were well resolved by the GPR data. The GPR data also revealed variations in the nature of these infiltration events between contrasting annual cycles. The use of CMP soundings also permitted the determination of DGW velocities, which enabled better characterization of short-duration wetting/drying and freezing/thawing processes. This higher resolution information can be used to examine the nature of the coupling between shallow and deep moisture conditions. High-resolution surface GPR measurements were used to examine vertical soil moisture distribution and its associated dynamics within the shallow subsurface over a 26 month period. While the apparent ability of surface GPR methods to give high quality estimates of soil moisture distribution in the upper 3 meters of the vadose zone was demonstrated, the nature of these GPR-derived moisture data needed to be assessed in the context of other hydrological information. As a result, GPR soil moisture estimates were compared with predictions obtained from a well-accepted hydrological modeling package, HYDRUS-1D (Simunek et al., 2008). The nature of transient infiltration pulses, evapotranspiration episodes, and deep drainage patterns were examined by comparing them with vertical soil moisture flow simulations. Using laboratory derived soil hydraulic property information from soil samples and a number of simplifying assumptions about the system, very good agreement was achieved between measured and simulated soil moisture conditions without model calibration. The overall good agreement observed between forward simulations and field measurements over the vertical profile validated the capacity of surface GPR to provide detailed information about hydraulic state conditions in the upper few meters of vadose zone. A unique DGW propagation phenomenon was observed during early soil frost formation. High-frequency DGW measurements were used to monitor the seasonal development of a thin, high velocity frozen soil layer over a wet low velocity unfrozen substratum. During the freezing process, the progressive attenuation of a low velocity DGW and the subsequent development of a high velocity DGW were observed. Numerical simulations using GPRMAX2D (Giannopoulos, 2005) showed that low velocity DGW occurring after freezing commenced was due to energy leaking across the frozen layer from the spherical body wave in the unfrozen half space. This leaky phase progressively dissipated until the frozen layer reached a thickness equivalent to one quarter of the dominant wavelength in the frozen ground. The appearance of the high velocity DGW was governed by its destructive interference with the reflection events from the base of the frozen layer. This interference obscured the high velocity DGW until the frozen layer thickness reached one half of the dominant wavelength in the frozen ground. While GPR has been extensively used to study frozen soil conditions in alpine environments, its capacity to characterize highly dynamic shallow freeze-thaw processes typically observed in temperate environments is not well understood. High-frequency reflection profiles and CMP soundings were used to monitor the freezing and thawing process during the winter seasonal period at the sand and silt loam sites. Reflection profiles revealed the long-term development of a very shallow (<0.5 m) soil frost zone overlying unfrozen wet substratum. During the course of the winter season, long-term traveltime analysis yielded physical properties of the frozen and unfrozen layers as well as the spatial distribution of the base of the soil frost zone. Short-term shallow thawing events overlying frozen substratum formed a dispersive waveguide for both the CMP and reflection profile surveys. Inversion of the dispersive wavefields for the CMP data yielded physical property estimates for the thawed and frozen soils and thawed layer thickness. It was shown that GPR can be used to monitor very shallow freezing and thawing events by responding to changes in the relative dielectric permittivity of the soil water phase. The works embodied in this thesis demonstrate the effectiveness of high-frequency GPR as a non-invasive soil moisture monitoring tool under a full range of naturally occurring moisture conditions with the temporal and vertical resolution necessary to quantitatively examine shallow vadose zone moisture dynamics. Because this study encompassed an unprecedented range of naturally occurring soil conditions, including numerous short and long duration wetting/drying and freezing/thawing cycles, complex geophysical responses were observed during highly dynamic soil moisture processes. Analysis and interpretation of these geophysical responses yielded both qualitative and quantitative information about the state of the hydrologic system, and hence, provided a non-invasive means of characterizing soil moisture processes in shallow vadose zone environments. In the future, these GPR soil moisture monitoring strategies should be incorporated into advanced land-surface hydrological modeling studies to improve our understanding of shallow hydrologic systems and its impacts on groundwater resources.

This study investigated the possibility of three approaches in determination of soil moisture in the root zone. The aim of the study was to contribute to the development of soil moisture monitoring methods to better help crop best management practices. / Two fields were examined, one at the Macdonald Campus of McGill University and the other near St. Jean-sur-Richelieau. Three approaches were used; (1) a hand-held hyper-spectral sensor (350-2500 nm), (2) a Geonics RTM EM-38 conductivity meter and, (3) gravimetric soil moisture sampling. / The first experiment (at St. Jean-sur-Richelieu) investigated the possibility of monitoring soil moisture with the EM_38, in the presence of field elevation and soil texture. The second experiment (at Macdonald Campus) investigated the possibility of using hyper-spectral sensor data for determination of soil characteristics in the root zone, in the presence of such factors as (a) irrigation (main treatment), (b) nitrogen (sub-treatment), and (c) weed control (sub-sub-treatment). Statistical regression analyses and Artificial Neural Network models were used to select the best waveband region for determination of soil root zone moisture. / The coefficients of determination obtained by the statistical analyses ranged from 0.75 to 0.94. The wavebands most frequently identified by these analyses ranged from 1100 nm-1900 nm. / The performances of the ANN training models were considered acceptable (R2 from 0.6 to 0.8). The lack of sufficient data greatly impacts this approach.

Photocopy of typescript. / Thesis (Ph. D.)--University of Hawaii at Manoa, 1978. / Bibliography: leaves 399-420. / xx, 420 leaves ill., maps

The impact of cold climate on physical and biological processes, especially the role of air and soil temperature in recovering photosynthesis and transpiration in boreal forests, was investigated in a series of studies. A process-based ecosystem model (CoupModel) considering atmospheric, soil and plant components was evaluated and developed using Generalized Likelihood Uncertainty Estimation (GLUE) and detailed measurements from three different sites. The model accurately described the variability in measurements within days, within years and between years. The forcing environmental conditions were shown to govern both aboveground and belowground processes and regulating carbon, water and heat fluxes. However, the various feedback mechanisms between vegetation and environmental conditions are still unclear, since simulations with one model assumption could not be rejected when compared with another. The strong interactions between soil temperature and moisture processes were indicated by the few behavioural models obtained when constrained by combined temperature and moisture criteria. Model performance on sensible and latent heat fluxes and net ecosystem exchange (NEE) also indicated the coupled processes within the system. Diurnal and seasonal courses of eddy flux data in boreal conifer ecosystems were reproduced successfully within defined ranges of parameter values. Air temperature was the major limiting factor for photosynthesis in early spring, autumn and winter, but soil temperature was a rather important limiting factor in late spring. Soil moisture and nitrogen showed indications of being more important for regulating photosynthesis in the summer period. The need for systematic monitoring of the entire system, covering both soil and plant components, was identified as a subject for future studies. The results from this modelling work could be applied to suggest improvements in management of forest and agriculture ecosystems in order to reduce greenhouse gas emissions and to find adaptations to future climate conditions. / QC 20110921 / the Nitro-Europe project

The potential of proximal soil sensing methods for high resolution investigation of soils in the landscape has been investigated. This addresses the need for improved environmental monitoring and management of soils within their environs. On-the-go electromagnetic (EM) mapping has been used to map soils, providing a high resolution (< 10m) spatially defined soil apparent electrical conductivity (ECa) datalayer. Vis-NIR field spectroscopy has been trialled for in situ analysis of soil carbon, nitrogen and moisture. The portable spectroradiometer has been used at 6 sites in the Taupo-Rotorua region for rapid, field analysis of soil carbon (R2 calibration = 0.95, R2 prediction = 0.75,) soil nitrogen (R2 calibration = 0.95, R2 prediction = 0.86) and moisture (R2 calibration = 0.96, R2 prediction = 0.70) by collecting reflectance spectra from the flat surface of a soil core; and at one Manawatu site for soil moisture (R2 calibration = 0.79, R2 prediction = 0.71), where the reflectance spectra were collected directly from a freshly cut in situ soil surface. EM mapping and Vis-NIR field spectroscopy were used in combination to spatially characterize soil moisture patterns at the Manawatu site. Soil available water-holding capacity (AWC) of ECa-defined zones has been assessed at six irrigated production farming sites. Two methods (predicted AWC v ECa; estimated AWC v ECa) have been used to relate soil ECa to soil AWC to predict spatial AWC (R2 = 0.8 at 5 sites). Site-specific soil water balance models have been developed at all sites; and a wireless real-time soil moisture monitoring network has been trialled at two sites, to be used with the ECa-AWC prediction model for the development of daily soil water status maps, for variable rate irrigation (VRI) scheduling. This digital, spatially defined soil water status information is available for upload to a sprinkler system modified for variable rate application. The calculated water savings with VRI were 926% with equivalent energy savings and improved irrigation water use efficiency. Drainage and runoff were reduced by 055% during the period of irrigation, with the accompanying reduced risk of nitrogen leaching. The reduction in virtual water content of product has also been assessed for VRI and compared with uniform rate irrigation (URI) at three study sites. This study suggests that these proximal sensing methods provide a new improved way of monitoring and mapping soils. This facilitates soil inventory mapping, for example soil moisture and carbon mapping. In addition, these high resolution environmental monitoring and mapping techniques provide the information required for optimizing site-specific management of natural resources at the farm scale. On-the-go electromagnetic (EM) mapping has enabled a step change in the pedological investigation of New Zealand soils. Resulting soil ECa maps provide a tool for improving traditional soil map boundaries because they delineate soil zones primarily on a basis of soil texture and moisture in non-saline soils. In this study the maps have been used for site-specific irrigation management at the farm-scale, aiming to increase the energy efficiency of this land management operation. The study has developed a method for improved use of freshwaters by more accurate irrigation scheduling, based on high resolution characterization of spatial and temporal soil differences.

Growth, productivity and fruit quality of grapevines are closely linked to soil water availability. Withholding of water for any length of time results in slowed growth. If drought continues yield may be lost. Vines can be manipulated to stimulate early defence mechanisms by decreasing soil water availability. By using an irrigation technique, which allows for separate zones with different soil moisture status, it is possible to stimulate response mechanisms of the root system which are normally related to water stress. The difficulty of separating 'wet' and 'dry' zones was initially overcome by using split-root plants with root systems divided between two containers. Such experiments on split-root model plants resulted in the development of an irrigation technique termed partial rootzone drying (PRD). Results from irrigation experiments using PRD have shown that changes in stomatal conductance and shoot growth are some of the major components affected (Dry et al., 1996). The idea of using irrigation as a tool to manipulate stress responses in this way had its origin in the concept that root- derived abscisic acid (ABA) was important in determining stomatal conductance (Loveys, 1984). Later experiments on split-root plants have demonstrated that many effects of water stress can be explained in terms of transport of chemical signals from roots to shoots without changes in plant water status (Gowing et al., 1990). The necessary chemical signals are provided by the dry roots, and the wet roots prevent the development of deleterious water deficits. The general hypothesis tested during this study was that partial drying of the root system gives rise to a change in the supply of root-derived chemical signals which determine changes in grapevine physiology, thereby affecting fruit quality. Experiments were conducted on split-root vines (Vitis vinifera L. cvs. Cabernet Sauvignon and Chardonnay) grown in pots of different sizes, on field-grown vines which had either their root system divided by a plastic membrane (Vitis vinifera L. cv. Cabernet Sauvignon on own roots or grafted on Ramsey rootstocks) or conventional vines with a non-divided root system (Vitis vinifera L. cv. Cabernet Sauvignon, Shiraz and Riesling) with a commercial PRD irrigation design. The irrigation treatments were vines receiving water on both sides (control) and PRD-treated vines, which only received water on one side at any time. The frequency of alternation of 'wet' and 'dry' sides was determined according to soil moisture and other influences such as rainfall and temperature. In most of the experiments the irrigation was alternated from one side to the other every 10 to 15 days. Chemical signals from roots: the role of ABA and cytokinins Studies on chemical signals have concentrated on ABA and cytokinins (CK). An improved stable isotope dilution protocol, which enables analysis of ABA and CK from the same tissue sample, was developed. Analysis of cytokinins focused on zeatin (Z), zeatin riboside (ZR), zeatin glucoside (ZG) and iso pentenyl adenine (iP). Roots are relatively inaccessible, particularly in field situations. To enable easier access to roots of field-grown vines, split-root vines were planted in a trench which was refilled with a sandy soil. This created a homogenous soil substrate and did not restrict root growth while still allowing access to roots under field conditions. Analyses of root samples of field-grown vines have shown that cytokinins and ABA may originate in roots and their concentrations can be substantially altered during an irrigation cycle. Alternating soil water conditions showed that [ABA] in roots on the 'dry' side was significantly higher compared with the 'wet' side. Due to a reduction in CK on the 'dry' side of PRD-treated vines, the ratio between ABA and CK was substantially changed during an irrigation cycle. The ABA levels in root tissue and in petiole xylem sap were negatively related to stomatal conductance. This further suggests that ABA, mostly synthesized on the 'dry' side of the root system, might be responsible for a decline in stomatal conductance. Furthermore, a higher pH of petiole xylem sap was observed in PRD-treated vines which may also contribute to the regulation of stomatal conductance. Studies on stomatal patchiness showed that non-uniform stomatal aperture occurred in field-grown vines under natural environmental conditions and was more abundant under PRD conditions. The degree of stomatal opening, determined by using a water infiltration technique, correlated with measurement of stomatal conductance. Exogenous application of a synthetic cytokinin (benzyl adenine) can override the possible ABA-mediated stomatal closure resulting from PRD treatment, providing further evidence for the in vivo role of these growth regulators in the control of stomatal conductance. The effect of benzyl adenine was transient, however, requiring repeated applications to sustain the reversal. In addition, CKs may also be important in influencing grapevine growth. Following several weeks of repeated spray applications with benzyl adenine, it was found that the development of lateral shoots in PRD-treated vines was enhanced compared to PRD-treated vines sprayed with water only. This supports the idea that the reduction in lateral shoot development seen in PRD-treated vines is due to a reduced production of CKs (Dry et al., 2000a). By measuring shoot growth rate it was found that one common feature of PRD-treated vines, which were not sprayed with CK, was a reduction of lateral shoot growth. It can therefore be speculated that the reduction in lateral growth is related to a reduced delivery of cytokinins from the roots. Zeatin and zeatin riboside concentration in shoot tips and prompt buds/young lateral shoots were reduced by the PRD treatment providing further evidence in support of this hypothesis. Water movement from 'wet' to 'dry' roots Roots, being a primary sensor of soil drying, play an important role in long- and short-term responses to PRD. Using stable isotopes of water and heat-pulse sap flow sensors water movement was traced from wet to dry roots in response to PRD. The redistribution of water from roots grown in a soil of high water potential to roots growing in a soil of low water potential may be of significance with regard to the movement of chemical signals and the control of water balance of roots. Measurements of the relative water content (RWC) have shown a slower decline of RWC of the 'dry' roots of PRD vines relative to roots of vines which received no water, despite similar water content in soil surrounding those roots. The redistribution of water may help to sustain the response to PRD for longer periods possibly releasing chemical signals and to support the activity of fine roots in drying soil. Field vines, irrigated with PRD over several growing seasons, altered their root distribution relative to the control vines. PRD caused a greater concentration of fine roots to grow in deeper soil layers and this may contribute to a better water stress avoidance. The effect on root growth may be augmented by the water movement and by the large difference in ABA to cytokinin ratio, which are also known to alter root growth. PRD makes more efficient use of available water In experiments where both control and PRD-treated vines received the same amount of water many differences between the vines were demonstrated. Under conditions where water supply was adequate for both treatments, the stomatal conductance and growth of the PRD-treated vines was restricted as has been observed in many previous experiments. As total water input was reduced, however, the stomatal conductance of PRD-treated vines became greater than control vines, suggesting that the latter were experiencing a degree of water stress, whereas the PRD-treated vines were not. This may have been due to the greater depth of water penetration in the case of the PRD-treated vines, where water was applied to a smaller soil surface area. This distinction between PRD-treated and control vines, at very low water application rates, was also reflected in pruning weights and crop yields which were actually greater in PRD-treated vines. It was concluded that at low water application rates, the PRD-treated vines were more tolerant of water stress and made more efficient use of available water. Reduction in vigor opens the canopy. The initial aim of the research which led to the development of PRD was to achieve better control of undesirable, excessive shoot and foliage growth which, from a viticultural point of view, has many disadvantages. Grapevine shoot growth rate responds very sensitively to drying soil conditions. The irrigation strategy used in the PRD experiments maintained a reduction of both main shoot and lateral shoot growth. In response to PRD a decrease in shoot growth rate and leaf area was observed. Much of the reduction in canopy biomass was due to a reduced leaf area associated with lateral shoots, thus influencing the canopy structure. This was one major factor improving the light penetration inside the canopy. Control of vegetative vigour results in a better exposure of the bunch zone to light and, as a consequence, in improved grape quality. It is likely that changes in canopy density, as a result of PRD, is causing changes in fruit quality components. Anthocyanin pigments such as derivatives of delphinidin, cyanidin, petunidin and peonidin were more abundant in berries from PRD vines; by comparison the concentration of the major anthocyanin, malvidin, was reduced. When leaves were deliberately removed from more vigorous control vines, which improved bunch exposure, the differences in fruit composition were much reduced. This further supports the idea that a more open canopy, in response to PRD, improves fruit quality by affecting the canopy structure. Fruit quality consequently determines the quality, style and value of the finished wine. Wines from this study have been produced and data on wine quality from commercial wineries are also available. Sensory evaluations have demonstrated that high wine quality from PRD-treated vineyards can be achieved without any yield-depressing effects. This study has provided evidence to support the original hypothesis. The major findings were: a) Chemical signals, altered under PRD and mostly originating from roots, play an important role in the root to shoot communication in grapevines. b) The movement of water from 'wet' to 'dry' soil layers may help to sustain chemical signals as a response of grapevines to PRD and to support the activity of fine roots in drying soil. c) A reduction in vegetative growth, in particular of lateral shoots, was sustained using PRD and affected the canopy structure which in turn, due to a better light penetration into the canopy, improved the fruit quality. d) The reduction in irrigation water applied did not have a detrimental effect on grape yield and thus the efficiency of water use was improved. e) Application of relatively low irrigation rates showed that PRD-treated vines were more tolerant of water stress and made more efficient use of available water. / Thesis (Ph.D.)--Department of Horticulture, Viticulture and Oenology, 2000.

The increasing demand worldwide for Australian wine has driven the recent expansion in vineyard plantings which in turn, has increased the requirement for irrigation water in grape growing regions. Large areas of Australia's national vineyard are already irrigated with relatively poor quality water and many districts have a limited supply of water available for irrigation. Therefore, improving the efficiency of vineyard irrigation is essential for the long term sustainability of the Australian wine industry. Reducing the volume of irrigation applied to vineyards can improve water use efficiency (WUE) and reduce vine vigour. However, it can be difficult to accurately apply the required degree of water stress and this may result in a yield reduction. An irrigation technique known as partial rootzone drying (PRD) involves applying a continuous water deficit to alternate sides of the root system while ensuring the other half is well watered. This has been found to increase WUE, reduce vine vigour, improve fruit quality but not affect vine yield. Where the soil volume available for root growth is limited, so too is the resultant vine growth and yield, as access to water and nutrients is restricted. Shallow soil profiles present a major limitation to root development and grapevine vigour. In shallow soils, mounding topsoil from the vineyard mid row to form raised beds in the vine row has been found to improve vine growth and productivity. Soil mounds tend to have a higher moisture holding capacity than flat soil but the greater surface area of the mound can increase surface evaporation. Applying mulch to the mound surface has been shown to reduce evaporative soil moisture loss and conserve irrigation water. The general hypothesis tested in this experiment was that: 'Combining soil mounding, straw mulch and partial rootzone drying (PRD) irrigation will improve grapevine growth and production and reduce levels of sodium and chloride in the vine.' The experiment was established on Vitis vinifera cv. Shiraz in a mature vineyard at Padthaway, South Australia, where the soil profile consisted of a shallow loam over clay and limestone. Soils of the experimental site were classified as moderately saline because their electrical conductivity (ECse) was greater than 4 dS/m. Three main factors, irrigation method (standard or PRD), soil mounding (flat or mounded) and surface cover (bare or straw mulch) were combined into a 2X2X2 factorial experiment such that the randomised block experiment comprised three replicates of eight treatments. The irrigation treatments were control (the application of water to both sides of the vines) and PRD (the application of water to one side of the vines only at any time). In the PRD treatment the frequency of alternating the 'wet' and 'dry' sides was determined according to soil moisture measurements and was typically every 5-7 days. It was very difficult to accurately schedule the irrigation at this site to avoid applying a moisture deficit to the PRD treatment. The shallow soil profile dried very quickly following irrigation and there were problems with the accuracy of the soil moisture sensing equipment for the duration of the experiment. As a result, PRD vines experienced repeated, excessive soil moisture deficits such that vine growth and production were significantly reduced each season. Shoot length was measured weekly during the growing season, while photosynthetically- active radiation (PAR), leaf area and canopy volume were measured at full canopy. Shoot number and pruning weight were measured during dormancy. All measures of vegetative growth (with the exception of PAR) were reduced in response to PRD. The decrease in lateral shoot growth for PRD resulted in greater bunch exposure and PAR. As a direct result of the severe soil moisture deficits experienced by the PRD treatment, all components of yield were significantly reduced compared to the control treatment each season. In particular, bunch weight and berry weight were significantly lower in the PRD treatment compared to the control, which suggests a period(s) of severe soil moisture deficit was experienced. Despite the yield loss sustained by the PRD treatment, WUE was improved compared to the control treatment in the first two years of this experiment. Berry anthocyanin levels were higher for the PRD treatment than the control but this may be due to the reduction in berry size. Weekly volumetric soil moisture monitoring showed that mounded soil was wetter than flat soil each year at similar horizons. In addition, the larger soil volume of the mounded treatment enhanced vine root development. Vegetative growth was greater in the mounded treatment than the flat treatment. Mounded vines grew more shoots than non-mounded vines, although there was no effect of mounding treatment on shoot length. The difference in shoot number was significant only in year 2, possibly due to the time required for vine roots to establish in the mounds. Pruning weight and mean shoot weight were higher for the mounded treatment each year and mounded vines grew more shoots than non-mounded vines in years 1 and 2. The increase in shoot weight of mounded vines, relative to non-mounded, was most likely due to the increase in lateral shoot growth which is supported by the lower PAR values of the mounded treatment compared to the flat treatment. Each year soil mounding resulted in higher vine yields than in flat soil beds as a direct result of the increased vine capacity of mounded vines. The mounded treatment had more shoots per vine than the non-mounded treatment and thus more bunches per vine. In addition, bunch weights were higher in the mounded treatment each year, due mainly to improved fruit set and more berries per bunch. Despite the mounded treatment resulting in a denser canopy than the non-mounded treatment this did not affect fruit composition in years 1 and 2. WUE was higher for the mound treatment in years 2 and 3 only, due to the volume of irrigation water applied being reduced, yet mounded vines continued to produce higher yields than non-mounded vines. In year 3, berries from vines grown in mounded soil had significantly higher pH than berries from vines grown in flat soil beds. Mounding treatment did not consistently affect berry anthocyanin or phenolic levels. Soil moisture levels were higher in the mulch treatment than the bare treatment in all seasons. In contrast to the mounding treatment, wetter soil did not consistently lead to improved vine growth or yield. Mulched vines developed fewer roots than non-mulched vines which is likely to have limited vine access to water and nutrients. As a result, shoot growth was similar for both treatments each season. The only significant difference between treatments for pruning weight was found in year 3 and was due entirely to shoot weight. The mulched treatment had lower PAR than the bare treatment in year 3, probably the result of increased lateral shoot growth and thus increased shoot weight, although this was not significant. PAR was significantly higher for the mulch treatment, compared to the bare treatment, in year 1 only but this was not supported by significant increases in vegetative growth. The mulch treatment resulted in higher vine yield than the non-mulch treatment in years 1 and 3. This difference was significant in year 3 only when both bunch number and bunch weight were significantly higher for mulched vines. In year 1 only bunch weight was significantly higher for mulched vines. Differences between treatments occurred in year 2 for fruit composition, specifically juice TA and anthocyanin levels. The mulch treatment had significantly higher TA and a significantly lower anthocyanin concentration in berries than the non-mulch treatment in year 2. There was no evidence of increased shading in the mulched treatment relative to the bare treatment that year but the difference in anthocyanin concentration may be explained by the significantly smaller berries of the bare treatment. Analysis of samples taken regularly from the soil profile and vine rootzone showed that there was no treatment effect on soil salinity but that soil ECse increased with soil depth and time each year. Petiole samples were collected at flowering, veraison and pre-harvest and levels were deemed toxic by pre-harvest each year. The PRD treatment received approximately 60% of the salt applied to the control treatment. This did not reduce ECse but did result in lower measures of sodium and chloride in petioles and juice at harvest. Vines grown in soil mounds had access to a greater volume of soil water than the non-mounded vines. The mounded treatment had higher levels of pre-harvest petiole chloride in years 1 and 3 but this was significant only in year 3. There was no consistent trend in levels of sodium and chloride in the juice from either mound treatment, although in year 3 berry extract chloride levels were found to be significantly higher in the mounded treatment than the flat treatment. Similarly, a consistent trend in sodium and chloride levels of petioles and juice was not evident for the mulch treatment. Although, in year 3 petioles of vines grown in bare soil were found to contain significantly more petiole chloride than those which had straw mulch applied. The hypothesis that combining soil mounding, straw mulch and partial rootzone drying (PRD) irrigation will improve grapevine growth and production and reduce levels of sodium and chloride in the vine is rejected as there was not a consistent, cumulative effect of the three factors in this experiment. / Thesis (M.Ag.Sc.)--School of Agriculture and Wine, 2005.