Thesis (PhD (Conservation Ecology and Entomology))--Stellenbosch University, 2008. / The Okavango Delta, Botswana, is a unique ecosystem and this is reflected in its extraordinary biodiversity. The Nile crocodile (Crocodylus niloticus Laurenti) is the apex predator, and performs a number of vital functions in this system, making it a keystone species. The panhandle crocodile population has declined significantly over the last 80 years and is now threatened as a result of past over-exploitation and present human disturbance. In order to effectively conserve this species and in turn the health of this important region it is imperative to gain an understanding of their ecology and population dynamics. The population status of the Nile crocodile in the panhandle region of the Okavango Delta, Botswana, was assessed using a combination of capture-mark-recapture surveys, spotlight surveys and aerial surveys. The capture-mark-recapture experiment was conducted continuously from 2002 - 2006. A total of 1717 individuals, ranging in size from 136 mm – 2780 mm SVL, were captured, of which 224 animals were recaptured. Using a Bayesian technique, the total annual population in the panhandle region of the Okavango Delta was estimated to be 2 570 ± 151.06 individuals, with an adult population of 649.2 individuals with the number of breeding females estimated to be 364 individuals. It was concluded that this population cannot sustain the further harvest of breeding animals prior to the increase and stabilization of the population. Spotlight counts revealed a decline in the encounter-rate of crocodiles on the Okavango River with time, although more long-term data needs to be collected to confirm this trend. During the low-water season (September - February), 22.34 % of all crocodiles were observed, while during the flood-season only 13.34 % were observed, yielding correction factors for spotlight surveys of 4.46 (low-water) and 7.49 (high-water) for all animals in the panhandle. Two aerial surveys, conducted at the low-water and high-water peaks yielded total estimates of 588 (77.7 % of adults) during the low-water period and 350 (56.7 % of adults) during the high-water period. Correction factors of 1.28 (low-water) and 1.77 (high-water) were calculated for aerial surveys. An annual average of 50 nests was located in the panhandle, representing a 50 - 60 % decrease over the last 20 years. In regions with high human disturbance, breeding females situated their nests in hidden locations, away from accessible channels. Hatchlings exhibited elongation of the jaw in order to capture smaller prey items and morphometric shifts in jaw shape coincided with a dietary change at 400 mm SVL. The jaw became broader and deeper as animals matured, presumably in preparation for larger mammalian prey. The average growth rate of recaptured yearlings was 0.198 ± 0.116 mm.d-1 SVL and was closely correlated to the amount of time an individual spent in above-average water temperatures. Body condition (RCF) was significantly and positively correlated with a rise in water-level and negatively correlated to time spent in above-average water and air temperatures. Average RCF values were intersected when animals had spent 50 % of their time in above-average temperatures and water level. Generally crocodiles in the panhandle showed no significant sex-related differences in their sizes or the distances they travelled. The majority of recaptures (62.5 %) moved less than 500 m from the initial capture site. Adults in the panhandle occupied definite ranges, within which were preferred core areas where the majority of their time was spent. The panhandle crocodile population has declined significantly over the last 80 years, and is now threatened as a result of past over-exploitation and present human disturbance. The management of this population, including both its conservation and sustainable commercial utilisation, requires an adaptive strategy based on accurate monitoring procedures.

Thesis (MSc(Conservation Ecology and Entomology)--University of Stellenbosch, 2006. / The stomachs of 286 crocodiles (17 cm to 166 cm snout to vent length) were lavaged over a two year period. Crocodylus niloticus has a similar ontogenetic shift in diet to that of other crocodilians. Yearlings predated primarily on aquatic insecta and arachnida, as crocodile size increased (juveniles) the diet became more diverse including crustacea, amphibia and fish. The largest size class (sub-adults) consumed primarily fish. Yearlings fed consistently throughout the year, however a higher proportion of empty stomachs occurred within the juvenile and sub-adult size classes during the winter months. A captive experiment with wild caught crocodiles (0.7 kg - 20 kg) indicated a decrease in satiation rate (maximum mass of food eaten as a percentage of crocodile body mass) from 11.3 % to 6.5 % with an increase in crocodile size. Wild yearlings consumed 0.48 % of their body mass in prey per day, and juveniles, 0.23 %. The wild food conversion rates of natural prey were low, 32 % and 40 % for yearlings and juveniles respectively. This was possibly due to a high percentage of indigestible (chitinous) invertebrate mass in the diet. The percentage of stomach stone mass to crocodile body mass increased with crocodile size. Seven species of nematodes were found within the stomachs, four of which represent new geographic records.

Egypt witnesses an increasing population growth concomitant with limited water and agricultural land resources. The objectives of this study were to utilize remotely sensed data for the inventory of agricultural lands in the Nile Delta, monitoring spatial and temporal variations in agricultural lands and quantifying agricultural land losses due to urbanization. Inventory of agricultural lands was designed using two approaches: thresholding and linear mixture analysis. We utilized 12 images from the Landsat satellite: 4 from Multi-Spectral Scanner (1972), 4 from Thematic Mapper (1984) and 4 from Thematic Mapper (2003) covering the entire Nile Delta. In addition, a set of 480 NDVI images were obtained from the Advanced Very High Resolution Radiometer (AVHRR) sensor that cover the period 1984-2003. Landsat images were subjected to atmospheric, radiometric and geometric corrections as well as image mosaicking. Normalized Difference Vegetation Index (NDVI) was applied and thresholding for agricultural land cover revealed that the areal extent of agricultural lands was 3.68, 4.32 and 4.95 million acres (one acre = 0.96 Egyptian Feddan) in 1972, 1984 and 2003, respectively. Linear mixture analysis of the AVHRR-NDVI with the TM-NDVI images showed that agricultural lands approached 4.11 and 5.24 million acres in 1984 and 2003, respectively. Using multitemporal Principal Component Analysis (PCA) for the TM and AVHRR images proved that reclamation activities were mostly along the western margins of the Nile Delta. Spatio-temporal analysis showed that middle delta has the highest agricultural vigor compared with the margins. Agricultural land loss was estimated in some cities within the delta as well as in Greater Cairo area. We studied the land cover classification and change in Greater Cairo area based on 5 Landsat images acquired in 1972, 1984, 1990, 1998 and 2003. Agricultural lands lost 28.43% (32,236 acres) between 1972 and 2003 with an annual loss of 1040 acres. Agricultural lands on the peripheries of Cairo and its satellite towns were the most vulnerable areas. Soil salinization was another limiting factor for land reclamation. The main conclusion confirms that remote sensing is an accurate, efficient and less expensive tool for the inventory and monitoring agricultural land change in Egypt.

In externally fertilizing fishes, multiple factors of the spawning environment may affect the sperm viability, and thus the fertilization rate. In this thesis, the sperm activation effect of osmolality of non-electrolytes and electrolytes activation media, pH and ion channel inhibitors on Nile tilapia, Oreochromis niloticus, and the effect of environmentally relevant pollutants (cadmium, malathion and rotenone) on sperm fitness (motility and morphology) were investigated. Seminal fluid samples collected from male fishes (200-250g) were subjected to activation treatments, then analyzed for sperm motility using motility score, and motility variables using Hobson sperm tracker for straight line velocity (VSL), beat cross frequency (BCF) and percentage of motile cells (MOT). For the ion channel inhibitors and pollutants, the effect on sperm motility variables of VSL, VCL (curvilinear velocity) and LIN (linearity) were determined. Multivariate analysis was also carried out to determine the effects of ion channel inhibitors and pollutants on sperm subpopulations. The effects of pollutants on sperm morphology were observed using microscopy techniques, namely, scanning electron microscopy (SEM) and transmission electron microscopy (TEM). Sperm motility was initiated when the sperm were exposed to hypoosmotic electrolytes and non-electrolytes solution. We also found that sperm show optimal activity at pH range of 6-8 which depicts that the effect of pH on sperm motility is negligible. Lanthanum (calcium channel blocker) and flunarizine (sodium-calcium exchanger pump blocker) were found to inhibit sperm motility at 25 and 5 µM, respectively, suggesting that both ion channels play a significant role in sperm activation in O. niloticus. In contrast amiloride, ouabain and quinine showed no effects on activation, indicating that epithelial sodium channels, sodium-potassium ATPase and voltage gated potassium channels respectively are unlikely to have major roles in sperm activation or motility. The spermatozoa of Oreochromis niloticus were uniflagellate with clearly differentiated oval-shaped head, midpiece and flagellum. Sperm exposed to hypoosmotic shock showed swelling of the midpiece and sleeve structure. The pollutants showed dose- and time-dependent effect on sperm motility of the fast linear sperm subpopulation. Sperm morphology was not affected. Sperm motility was inhibited at 0.44, 0.03 and 0.063 µM, cadmium, malathion and rotenone respectively. Both cadmium and malathion exerted effects very quickly after exposure. The effect of cadmium, which can exert toxicity by calcium antagonism, is consistent with the effects of calcium channel blockes and further supports an important role for calcium in sperm activation and motility. Malathion had effects at relatively low, environmentally relevant concentrations, suggesting the presence of functionally important acetylcholinesterase activity in sperm, and also the presence of activation cytochrome P450 activity. Rotenone, a well known mitochondrial poison, affected motility only after 15 min of pretreatment. The alteration of sperm trajectories in fast linear spermatozoa subpopulation by pollutants at submicromolar concentrations as demonstrated in our study implies potentially serious consequences for fish populations in polluted environments. Furthermore the results indicate that fish sperm motility as assessed by CASA could be an ecologically relevant, sensitive, and ethically acceptable method for toxicity testing in environmental risk assessment.

Theories of transboundary water politics have failed to explain the status quo in many river basins: fragile political relations between riparian states and nationalist domestic politics, as well as weak regional institutions and huge economic inefficiencies – but also an absence of wars over water. This is due to an uncritical approach to scale, power, and geopolitics. It is the purpose of this thesis to address these conceptual gaps by critically evaluating the multiple relationships between the logic of large dams and the politics of international rivers. The meaning of dams, the politics of their operation and construction, and their impact on international relations are much more ambiguous, opaque and complex than existing explanations have suggested so far. In turn, their logic influences, competes with, and contradicts the logic of river basin governance. Dams produce alternative spaces of development, energy, and state power that complement or are superimposed on existing spaces of riparian cooperation. This thesis argues that the contradictions between these spaces explains the geopolitical limbo of many international rivers in the developing world. Drawing from Foucault’s governmentality theory, the literature of critical geopolitics, and post-structural approaches to spatial scale the case-oriented research design of this thesis evaluates two geopolitical processes in contentious transboundary river basins: the construction of the Grand Ethiopian Renaissance Dam on the Nile and the operation of the Toktogul Dam in the Kyrgyz stretch of the Syr Darya River. By unpacking these processes, this thesis makes three substantial contributions to existing scholarship. Firstly, it is argued that regional river basin management is essentially a geopolitical project that contradicts the geo-economic imperatives of the dam. Secondly, power and agency in water politics is diffused far beyond the nation-state and can be understood in terms of “network effects”. Thirdly, to marry the concerns of the geopolitical and the geo-economic, I propose that the contrasting logics give rise to “geopolitical entrepreneurs” – actors who use geopolitics for wealth accumulation, legitimacy, nation-building, and other ends. While dams may provide power, wealth, and authority an allegorical Sword of Damocles is let down on the riparians.

West Nile virus (WNV) is a mosquito-borne virus that infects many bird species. Examination of American crows and house sparrows from the Winnipeg region confirmed that WNV levels were at least 1000 times higher in crows than sparrows. No species differences were observed in the level of transcripts encoding a putative WNV receptor, β3 integrin. Differences in mosquito vector competence can be due to differences in the ability of WNV to enter mosquito cells. Using RNAi techniques, the role of two clathrin coat adaptor proteins in facilitating WNV infections in mosquito cells was examined, and the findings suggest that these proteins may act as resistance factors in Aedes aegypti, and as susceptibility factors in Culex quinquefasciatus. These findings will contribute to our understanding of the molecular basis of vector competence in different mosquitoes, and may help us determine whether other species could serve as potential vectors of this health-threatening virus. / October 2015

The present study is a survey of Anglo-French imperial, policies on the Upper Nile question and the Fashoda Crisis which resulted, and it is an attempt to place this conflict within the framework of the "new imperialism" after 1870.

Current methods of mosquito surveillance estimate general population abundances, but fail to represent the relationship of vector abundance to host density important to determining transmission risk of mosquito-borne pathogens (MBP). We sought to address this limitation by creating a novel mosquito trap that directly sampled mosquitoes seeking to feed on nesting birds. The primary objectives of this study were to (1) assess the efficiency of the Nest Mosquito Trap (NMT) and how this is affected by nest box size. (2) assess whether the NMT affects bird, specifically nest success in Prothonotary Warblers (Protonotaria citrea), and adult behavior. (3) compare our novel trap to existing methods. (4) profile the ecological parameters associated with bird/ mosquito interactions. Our results allow us to conclude that the NMT is not only an effective means of capturing host-seeking mosquitoes and measuring mosquito/ bird interactions, but does not have a deleterious effect on avian nesting success.

We develop and evaluate a novel host-vector model of West Nile virus (WNV) transmission that incorporates multiple avian host species and host stage-structure (juvenile and adult stages), with both species-specific and stage-specific biting rates of vectors on hosts. We use this model to explore WNV transmission dynamics that occur between vectors and multiple structured host populations as a result of heterogeneous biting rates. Our analysis shows that increased exposure of juvenile hosts results in earlier, more intense WNV transmission when compared to the effects of differential host species exposure, regardless of other parameter values. We also find that, in addition to competence, increased juvenile exposure is an important mechanism for determining the effect of species diversity on the disease risk of a community.

Seven families of XX and YY homozygous Oreochromis niloticus were produced by mitotic gynogenesis from XY neofemales and their genetic status was verified by multilocus DNA fingerprinting and progeny testing. Two of these gynogenetic families and their corresponding diploid controls were used with 64 AFLP primer combinations in different levels of screening (XX/YY grand pool; XX/YY family pool; XX/YY gynogenetics and XX/XY control individuals) to search for sex-linked or sex-specific markers. Grand pool screening did not reveal any sex-linked markers. Subsequent family pool and individual level screening identified four sex-linked AFLP markers from two primer combinations, three Y-linked (OniY425, OniY382, OniY227) and one X-linked (OniX420). Two of these (OniX420, OniY425) were shown to be allelic. Single locus PCR markers were developed for all of those markers. Linkage analysis of these markers and the sex locus within the source families revealed tight linkage, with estimated map distances of 13cM, 17cM and 20cM for OniY382, OniY227 and OniX420/OniY425 respectively. However, these sex-linked AFLP markers failed to consistently identify sex in unrelated individuals. To develop an effective system for parentage analysis in normal and gynogenetic progeny, AFLPs and multiplexed polymorphic microsatellite loci were investigated. Both were found to be effective, but microsatellites were more appropriate since they are codominant and some loci showed high gene-centromere recombination rates, suitable for discriminating meiotic from mitotic gynogenetics, while AFLPs are dominant markers. Spontaneous diploidization of the maternal chromosome set (SDM) was observed in gynogenetic progeny of one XY neofemale. Maternal inheritance and ploidy status were verified by multilocus DNA fingerprinting and chromosome karyotyping. Close genetic linkage between the red gene and an autosomal sex-reversal gene(s) in gynogenetic progeny and influences of autosomal sex-reversal gene(s) producing males in a fully inbred XX clonal line were previously reported in O. niloticus. To test if the same autosomal sex-reversal locus was responsible in both cases, a series of test crosses was carried out involving XX clonal neomale(s) and homozygous red females. The results indicated the involvement of more than one autosomal sex-reversal locus, one of which is linked to red body colour.