In order to obtain supporting evidence for biological denitrification in anaerobic lagoons degenerate ?Ò-Proteobacterial AOB primers were used to create and sequence clone libraries to detect the presence of ammonia-oxidizing bacteria at three field sites. Although there were PCR products from almost all samples, the clone libraries that were created show that not all PCR reactions produce only PCR products from ammonia-oxidizing bacteria. However, these primers did verify the presence of ammonia-oxidizers at one site, although their presence was not verified at the other sites. The presence of ammonia-oxidizers at the Battelle site implies that aerobic ammonia-oxidation is occurring. Clones were created and sequenced that were significantly different from other known sequences and tended to form very closely related phylogenetic groups. These phylogenetic groups were not isolated to one field site, and often more than one site had representatives in a closely related group. Future research in this field includes the design of new primer sets based on the sequences of the nitrifying bacteria clones reported in this research, creation of enrichment cultures, and use of new primers for fluorescent in situ hybridization.
| Identifer | oai:union.ndltd.org:NCSU/oai:NCSU:etd-09162004-173714 |
| Date | 17 September 2004 |
| Creators | Smith, Jennifer Mary |
| Contributors | Dr. James W. Brown, Dr. Sarah Liehr, Dr. John J. Classen |
| Publisher | NCSU |
| Source Sets | North Carolina State University |
| Language | English |
| Detected Language | English |
| Type | text |
| Format | application/pdf |
| Source | http://www.lib.ncsu.edu/theses/available/etd-09162004-173714/ |
| Rights | unrestricted, I hereby certify that, if appropriate, I have obtained and attached hereto a written permission statement from the owner(s) of each third party copyrighted matter to be included in my thesis, dissertation, or project report, allowing distribution as specified below. I certify that the version I submitted is the same as that approved by my advisory committee. I hereby grant to NC State University or its agents the non-exclusive license to archive and make accessible, under the conditions specified below, my thesis, dissertation, or project report in whole or in part in all forms of media, now or hereafter known. I retain all other ownership rights to the copyright of the thesis, dissertation or project report. I also retain the right to use in future works (such as articles or books) all or part of this thesis, dissertation, or project report. |
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