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Cloning and characterization of b-site APP cleaving enzyme (BACE)-type I.

by Chung Wilson. / Thesis (M.Phil.)--Chinese University of Hong Kong, 2002. / Includes bibliographical references (leaves 126-149). / Abstracts in English and Chinese. / Acknowledgements --- p.i / Abstract (English) --- p.ii / Abstract (Chinese) --- p.v / Content --- p.vii / Abbreviations --- p.xii / List of Figures --- p.xv / Chapter Chapter 1 --- Introduction --- p.1 / Chapter 1.1 --- Alzheimer's disease --- p.1 / Chapter 1.1.1 --- History of Alzheimer's disease --- p.1 / Chapter 1.1.2 --- Definition of Alzheimer's disease --- p.2 / Chapter 1.1.3 --- Symptoms of Alzheimer's disease --- p.6 / Chapter 1.1.3.1 --- Memory deficit --- p.6 / Chapter 1.1.3.2 --- Difficulty in learning --- p.6 / Chapter 1.1.3.3 --- Language difficulties --- p.7 / Chapter 1.1.3.4 --- Decline in ability to perform routine tasks --- p.7 / Chapter 1.1.4 --- Prevalence of Alzheimer's disease --- p.8 / Chapter 1.2 --- Present treatment of Alzheimer's disease --- p.9 / Chapter 1.2.1 --- Acetylcholine and dementia --- p.9 / Chapter 1.2.2 --- Tacrine as first drug approved by US Food and Drug Administration --- p.9 / Chapter 1.3 --- Proposed theory of Alzheimer's disease formation --- p.10 / Chapter 1.3.1 --- The amyloid cascade hypothesis --- p.10 / Chapter 1.3.1.1 --- The amyloid precursor protein --- p.10 / Chapter 1.3.1.2 --- The processing of amyloid precursor protein --- p.12 / Chapter 1.3.1.3 --- Neurotoxic effect of amyloid plaque --- p.15 / Chapter 1.3.1.4 --- Genetic factors --- p.15 / Chapter 1.3.1.4.1 --- The amyloid precursor protein --- p.15 / Chapter 1.3.1.4.2 --- Apolipoprotein E (ApoE) --- p.16 / Chapter 1.3.1.4.3 --- Presenilin genes --- p.17 / Chapter 1.3.2 --- Tau and tangle hypothesis --- p.19 / Chapter 1.3.2.1 --- Tau protein --- p.19 / Chapter 1.3.2.2 --- Paired helical filaments (PHF) --- p.20 / Chapter 1.3.2.3 --- Tau protein kinase --- p.20 / Chapter 1.3.2.3.1 --- Glycogen synthase kinase-3 (GSK-3) --- p.21 / Chapter 1.3.2.3.2 --- Cyclin-dependent kinase 5 (CDK5) --- p.21 / Chapter 1.3.2.4 --- Tangle leads to dementia --- p.22 / Chapter 1.4 --- Cross-talk between the two hypotheses --- p.24 / Chapter 1.5 --- β -secretase (BACE) --- p.24 / Chapter 1.5.1 --- Discovery of β-secretase (BACE) --- p.24 / Chapter 1.5.2 --- Detailed structure of BACE --- p.25 / Chapter 1.5.3 --- Comparsion of human and mouse BACE --- p.27 / Chapter 1.5.4 --- Comparsion of BACE-1 with BACE-2 --- p.27 / Chapter 1.5.5 --- Properties of BACE-1 --- p.28 / Chapter 1.5.6 --- Expression of BACE in E.coli --- p.29 / Chapter 1.5.7 --- Expression of BACE in mammalian cells --- p.30 / Chapter 1.6 --- Objectives of the present study --- p.32 / Chapter Chapter 2 --- Materials and Methods --- p.34 / Chapter 2.1 --- Recombinant DNA techniques --- p.34 / Chapter 2.1.1 --- Amplification of genes by PCR techniques --- p.34 / Chapter 2.1.2 --- Agarose gel electrophoresis --- p.34 / Chapter 2.1.3 --- Extraction of DNA from agarose gel --- p.35 / Chapter 2.1.4 --- Digestion of various vectors and inserts --- p.36 / Chapter 2.1.5 --- Ligation of DNA fragments --- p.36 / Chapter 2.1.6 --- Preparation of Escherichia coli competent cells --- p.37 / Chapter 2.1.7 --- Bacterial transformation --- p.38 / Chapter 2.1.8 --- Minipreparation of plasmid DNA --- p.38 / Chapter 2.1.9 --- Large scale preparation of plasmid DNA --- p.39 / Chapter 2.1.10 --- Strain storage and revival --- p.40 / Chapter 2.1.11 --- Plasma DNA purification by High Pure plasmid isolation kit --- p.41 / Chapter 2.1.12 --- DNA sequencing --- p.42 / Chapter 2.1.13 --- Quantitation of DNA by spectrophotometric method --- p.43 / Chapter 2.2 --- Prokaryotic protein expression --- p.43 / Chapter 2.2.1 --- Selection of appropriate clones for recombinant protein expression using conventional method --- p.43 / Chapter 2.2.2 --- Selection of appropriate clones for recombinant protein expression using modified method --- p.44 / Chapter 2.2.3 --- Large -scale expression of recombinant human BACE protein using modified method --- p.45 / Chapter 2.2.4 --- Preparation of inclusion body from the bacterial expression culture --- p.46 / Chapter 2.2.5 --- Refolding of human BACE --- p.47 / Chapter 2.2.6 --- Purification of recombinant human BACE by immobilized metal ion affinity chromatography (IMAC) --- p.47 / Chapter 2.2.7 --- Protein concentration determination --- p.48 / Chapter 2.2.8 --- Sodium dodecyl sulfate polyacrylamide gel electrophoresis (SDS-PAGE) --- p.48 / Chapter 2.2.9 --- Western blotting --- p.50 / Chapter 2.2.10 --- Plasmid stability test --- p.50 / Chapter 2.3 --- Mammalian cell expression --- p.51 / Chapter 2.3.1 --- Transient transfection --- p.51 / Chapter 2.3.2 --- Measuring transfection efficiency --- p.52 / Chapter 2.3.3 --- Stable transfection --- p.52 / Chapter 2.3.4 --- Preparation of membrane extracts from CHO cells --- p.53 / Chapter 2.4 --- HPLC analysis --- p.53 / Chapter 2.4.1 --- Preparation of samples --- p.53 / Chapter 2.4.2 --- Reverse phase HPLC --- p.54 / Chapter 2.5 --- Fluorometric assay --- p.54 / Chapter 2.6 --- Immunohistochemistry --- p.55 / Chapter 2.7 --- Reagents and buffers --- p.55 / Chapter 2.7.1 --- Medium for bacterial culture --- p.56 / Chapter 2.7.2 --- Reagents for preparation of plasmid DNA --- p.56 / Chapter 2.7.3 --- Buffers for agarose gel electrophoresis --- p.57 / Chapter 2.7.4 --- Buffers for SDS-PAGE --- p.58 / Chapter 2.7.5 --- Buffer for purification of protein --- p.60 / Chapter 2.7.6 --- Buffer for Western Blotting --- p.61 / Chapter 2.7.7 --- Culturing medium of CHO cells --- p.62 / Chapter 2.7.8 --- Solutions for estimating transfection efficiency --- p.63 / Chapter 2.7.9 --- Reagents for HPLC --- p.64 / Chapter 2.7.10 --- Reagents for fluorometric assays --- p.65 / Chapter 2.7.11 --- Reagents for Immunohistochemistry --- p.66 / Chapter Chapter 3 --- Results --- p.67 / Chapter 3.1 --- Expression of BACE in E. coli --- p.67 / Chapter 3.1.1 --- Cloning of truncated human and mouse BACE into pRSET --- p.67 / Chapter 3.1.2 --- Expression of BACE in BL21(DE3)LysS cells --- p.70 / Chapter 3.1.2.1 --- Expression of truncated mouse and human BACEin BL21(DE3)LysS cells using conventional method --- p.70 / Chapter 3.1.2.2 --- Expression of truncated mouse and human BACEin BL21(DE3)LysS cells using modified method --- p.72 / Chapter 3.1.3 --- Analysis of BACE activity of purified recombinant proteins --- p.76 / Chapter 3.1.3.1 --- Fluorometric analysis --- p.76 / Chapter 3.2 --- Expression of BACE in mammalian cells --- p.81 / Chapter 3.2.1 --- "Cloning of full length mouse and human BACE into pCDNA3, pCDNA4HisMax" --- p.81 / Chapter 3.2.2 --- Transient transfection --- p.84 / Chapter 3.2.2.1 --- Western blot analysis --- p.86 / Chapter 3.2.2.2 --- Fluorometric analysis --- p.88 / Chapter 3.2.2.3 --- HPLC --- p.91 / Chapter 3.2.3 --- Stable transfection --- p.100 / Chapter 3.2.3.1 --- Western blot analysis --- p.101 / Chapter 3.2.3.2 --- Fluorometric analysis --- p.103 / Chapter 3.2.3.3 --- HPLC --- p.105 / Chapter 3.2.3.4 --- Immunohistochemistry --- p.112 / Chapter Chapter 4 --- Discussion --- p.115 / References --- p.126 / Appendix --- p.i / Chapter A1 --- Vector circle map --- p.i / Chapter A1-1 --- Vector circle map of pBluescript II- --- p.i / Chapter A1-2 --- Vector circle map of pCDNA3 --- p.ii / Chapter A1-3 --- Vector circle map of pCDNA4HisMax --- p.iii / Chapter A1-4 --- Vector circle map of pRSET --- p.iv / Chapter A2 --- Primer lists --- p.v / Chapter A3 --- Chemical structure of fluorophore and quench used in fluorometric assay --- p.vi

Identiferoai:union.ndltd.org:cuhk.edu.hk/oai:cuhk-dr:cuhk_324046
Date January 2002
ContributorsChung, Wilson., Chinese University of Hong Kong Graduate School. Division of Biochemistry.
Source SetsThe Chinese University of Hong Kong
LanguageEnglish, Chinese
Detected LanguageEnglish
TypeText, bibliography
Formatprint, xix, 149, vi leaves : ill. (some col.) ; 30 cm.
RightsUse of this resource is governed by the terms and conditions of the Creative Commons “Attribution-NonCommercial-NoDerivatives 4.0 International” License (http://creativecommons.org/licenses/by-nc-nd/4.0/)

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