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Hardwarová akcelerace algoritmu pro hledání podobnosti dvou DNA řetězců / Hardware Acceleration of Algorithms for Approximate String Matching

Methods for aproximate string matching of various sequences used in bioinformatics are crucial part of development in this branch. Tasks are of very large time complexity and therefore we want create a hardware platform for acceleration of these computations. Goal of this work is to design a generalized architecture based on FPGA technology, which can work with various types of sequences. Designed acceleration card will use especially dynamic algorithms like Needleman-Wunsch and Smith-Waterman.

Identiferoai:union.ndltd.org:nusl.cz/oai:invenio.nusl.cz:236882
Date January 2007
CreatorsNosek, Ondřej
ContributorsKořenek, Jan, Martínek, Tomáš
PublisherVysoké učení technické v Brně. Fakulta informačních technologií
Source SetsCzech ETDs
LanguageCzech
Detected LanguageEnglish
Typeinfo:eu-repo/semantics/masterThesis
Rightsinfo:eu-repo/semantics/restrictedAccess

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