A novel three dimensional stereoselective descriptor for use in ligand-based computer-aided drug design (CADD) is presented in this thesis. CADD is an important tool for drug discovery and ligand-based CADD involves the computational analysis and representation of known active compounds for the prediction of novel active compounds. Several approaches are available for ligand-based CADD including quantitative structure-activity relationship (QSAR) which seeks to describe molecules numerically using descriptors. Stereochemistry is an important determinant of a molecules biological activity but presents a challenge for QSAR applications. Presented is the novel 3D-QSAR descriptor termed EMAS (Enantio-selective Molecular ASymmetry) that is capable of distinguishing between enantiomers and describing stereochemistry in a physically meaningful way. The descriptor aims to measure the deviation from an overall symmetric shape of the molecule.
EMAS showed good predictability when tested with a dataset of thirty-one steroids commonly used to benchmark stereochemistry descriptors (r2=0.89, q2= 0.78). Additionally, EMAS improved enrichment of 4.38 versus 3.94 without EMAS in a simulated virtual high-throughput screening (vHTS) for inhibitors and substrates of cytochrome P450.
| Identifer | oai:union.ndltd.org:VANDERBILT/oai:VANDERBILTETD:etd-07192012-140314 |
| Date | 26 July 2012 |
| Creators | Sliwoski, Gregory Richard |
| Contributors | Jens Meiler, Charles David Weaver, Vsevolod V Gurevich |
| Publisher | VANDERBILT |
| Source Sets | Vanderbilt University Theses |
| Language | English |
| Detected Language | English |
| Type | text |
| Format | application/pdf |
| Source | http://etd.library.vanderbilt.edu/available/etd-07192012-140314/ |
| Rights | unrestricted, I hereby certify that, if appropriate, I have obtained and attached hereto a written permission statement from the owner(s) of each third party copyrighted matter to be included in my thesis, dissertation, or project report, allowing distribution as specified below. I certify that the version I submitted is the same as that approved by my advisory committee. I hereby grant to Vanderbilt University or its agents the non-exclusive license to archive and make accessible, under the conditions specified below, my thesis, dissertation, or project report in whole or in part in all forms of media, now or hereafter known. I retain all other ownership rights to the copyright of the thesis, dissertation or project report. I also retain the right to use in future works (such as articles or books) all or part of this thesis, dissertation, or project report. |
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