A thesis submitted to the Faculty of Science, University of the Witwatersrand, Johannesburg, in fulfilment of the requirements for the degree of Doctor of Philosophy. October 2014. / The chloride intracellular channel protein 1 (CLIC1) is a dual-state protein that can exist
either as a soluble monomer or in an integral membrane form. Dysfunction in membrane
insertion has been implicated in several pathologies including apoptosis, cancer and
homeostatic imbalance. The transmembrane domain (TMD) is implicated in membrane
penetration and pore formation and is therefore a key target for understanding amphitropism
in CLIC1. The mechanism by which the TMD binds, inserts and oligomerises in membranes
to form a functional chloride channel is unknown. Here the secondary, tertiary and quaternary
structural changes of the CLIC1 TMD and several TMD mutants are reported in an attempt to
elucidate the membrane insertion mechanism. A synthetic 30-mer peptide comprising the
TMD was examined in 2,2,2-trifluoroethanol (TFE), SDS micelles and POPC liposomes
using far-UV CD, fluorescence and UV absorbance spectroscopy. The results suggest a fourstep
mechanism whereby the TMD, which is unfolded in buffer, refolds into a helix which
partitions onto the membrane, followed by insertion and dimerisation to form a membranecompetent
protopore complex. These helices associate via a Lys37-mediated cation-π
interaction to form weakly active dimers. The complex is then tethered to the membrane by a
cationic motif acting as an electrostatic plug. Thus, electrostatic interactions provide both a
strong thermodynamic driving force for helix-helix association as well as structural integrity
within the membrane. This represents an important step towards understanding how
amphitropism occurs in CLIC1 and offers a unique insight into how CLIC1 and other
proteins defy the ‘one-sequence one-fold’ hypothesis.
| Identifer | oai:union.ndltd.org:netd.ac.za/oai:union.ndltd.org:wits/oai:wiredspace.wits.ac.za:10539/16836 |
| Date | 30 January 2015 |
| Creators | Peter, Bradley |
| Source Sets | South African National ETD Portal |
| Language | English |
| Detected Language | English |
| Type | Thesis |
| Format | application/pdf, application/pdf |
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