Over half of the proteins found in nature are anticipated to be glycosylated, yet less than 2% of the protein structures in the protein data bank are glycoproteins. Clearly, we are behind in our structural understanding of glycoproteins. One reason for the lack of structural information for glycoproteins is due to their oligosaccharide heterogeneity. The two main methods for determining detailed three-dimensional protein structures are X-ray crystallography and nuclear magnetic resonance. Oligosaccharide heterogeneity hinders crystallization for X-ray crystallography analysis and complicates resonance assignment of nuclear magnetic resonance data. Another challenge is expressing high enough yields from eukaryotic cells for X-ray crystallography and nuclear magnetic resonance analysis. Additionally, unlike bacteria, eukaryotic cell lines typically cannot synthesize amino acids from glucose and ammonium chloride. Thus, eukaryotic media must contain amino acids for cell growth and protein production. Structural analysis of glycoproteins by nuclear magnetic resonance requires that the amino acids are labeled with 13C- and 15N and that the oligosaccharides are labeled with 13C. Media containing 13C- and 15N-labeled amino acids is extremely expensive. This dissertation explains methods that address each of these challenges utilizing the glycoprotein Thy-1. An economic approach for labeling recombinant protein expressed from insect cells for NMR is explained. A method for labeling oligosaccharides on glycoproteins expressed from mammalian cells is also explained. Changes in previously established expression and purification protocols for Thy-1 derived from Lec1 cells, which produce relatively homogeneous glycoforms, have increased yields to levels suitable for nuclear magnetic resonance studies. In addition, the biological relevancy of recombinant Thy-1, which is expressed with truncated oligosaccharides and without it's glycosylphosphatidylinositol anchor, was confirmed by receptor-binding analysis. / A Dissertation Submitted to the Program in Molecular Biophysics in Partial
Fulfillment of the Requirements for the Degree of Doctor of Philosophy. / Spring Semester, 2006. / December 9, 2005. / Isotopic Enrichment, NMR, Receptor-Binding Analysis, Thy-1, Glycoprotein Structure / Includes bibliographical references. / Timothy M. Logan, Professor Directing Dissertation; Richard L. Hyson, Outside Committee Member; Thomas C. S. Keller, III, Committee Member; Hong Li, Committee Member; Alan Marshall, Committee Member.
| Identifer | oai:union.ndltd.org:fsu.edu/oai:fsu.digital.flvc.org:fsu_175820 |
| Contributors | Walton, Wendy Jean (authoraut), Logan, Timothy M. (professor directing dissertation), Hyson, Richard L. (outside committee member), Keller, Thomas C. S. (committee member), Li, Hong (committee member), Marshall, Alan (committee member), Program in Molecular Biophysics (degree granting department), Florida State University (degree granting institution) |
| Publisher | Florida State University, Florida State University |
| Source Sets | Florida State University |
| Language | English, English |
| Detected Language | English |
| Type | Text, text |
| Format | 1 online resource, computer, application/pdf |
| Rights | This Item is protected by copyright and/or related rights. You are free to use this Item in any way that is permitted by the copyright and related rights legislation that applies to your use. For other uses you need to obtain permission from the rights-holder(s). The copyright in theses and dissertations completed at Florida State University is held by the students who author them. |
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