Ruminant livestock maintain an important role in meeting the nutrient requirements of the global population through their unique ability to convert plant fiber into human-edible meat and milk products. Volatile fatty acids (VFA) produced by rumen microbial fermentation of feed substrates represent around 70% of the ruminant animal's metabolic energy supply. Rumen fermentation profiles may directly impact productivity because the types of VFA produced are utilized at differing efficiencies by the animal. Improving our understanding of factors that control these fermentative outcomes would therefore aid in optimizing the productive efficiency of ruminant livestock. Improvements in animal efficiency are now more important than ever as the livestock industry must adapt to continue meeting the nutritional needs of a growing global population in the context of increased resource restrictions and requirements to lower the environmental impact of production. The relationship between diet and VFA ultimately supplied to the animal is complex and poorly understood due to the influence of numerous nutritional, biochemical, and microbial variables. The central aim of this body of work was therefore to explore and characterize how fermentation dynamics, rumen environmental characteristics, and the rumen microbiome behave in response to variations in the supply of fermentative substrate. The objective of our first experiment was to describe a novel in vitro laboratory technique to rank livestock feeds based on their starch degradability. This experiment also compared the starch degradation rates estimated by the in vitro method to the rates estimated by a traditional in situ method using sheep. A relationship between the degradation rates determined by these two procedures was observed, but only when feed nutrient content was accounted for. While this in vitro approach may not be able to reflect actual ruminal starch degradation rates, it holds potential as a useful laboratory technique for assessing relative differences in starch degradability between various feeds. Our second experiment aimed to measure changes in VFA dynamics, rumen environmental characteristics, and rumen epithelial gene expression levels in response to dietary sources of fiber and protein designed to differ in their rumen availabilities. Conducted in sheep, this study utilized beet pulp and timothy hay as the more and less available fiber source treatments, respectively, and soybean meal and heat-treated soybean meal as the more and less available protein source treatments, respectively. Results indicated that rumen environmental parameters and epithelial gene expression levels were not significantly altered by treatment. However, numerous shifts in response to both protein and fiber treatments were observed in fermentation dynamics, especially in interconversions of VFA. The objective of the third investigation was to assess whether the rumen microbiome can serve as an accurate predictor of beef and dairy cattle performance measurements and compare its predictive ability to that of diet explanatory variables. The available literature was assembled into a meta-analysis and models predicting dry matter intake, feed efficiency, average daily gain, and milk yield were derived using microbial and diet explanatory variables. Comparison of model quality revealed that the microbiome-based predictions may have comparable accuracy to diet-based predictions and that microbial variables may be used in combination with diet to improve predictions. In our fourth experiment, the objective was to investigate rumen microbial responses to the fiber and protein diet treatments detailed in Experiment 2. Responses of interest included relative abundances of bacterial populations at three taxonomic levels (phylum, family, and genus) in addition to estimations of community richness and diversity. Numerous population shifts were observed in response to fiber treatment. Prominent fibrolytic population abundances as well as richness and diversity estimations were found to be greater with timothy hay treatment and lower with beet pulp whereas pectin degraders increased in abundance on beet pulp. Microbial responses associated with protein treatment were not as numerous but appeared to reflect taxa with roles in protein metabolism. These four investigations revealed that significant changes can occur in VFA fermentation and rumen microbial populations when sources of nutrient substrates provided in a ruminant animal's diet are altered and that a new approach may be useful in investigating degradation of another important substrate for fermentation (starch) in a laboratory setting. Our findings also determined that animal performance can be predicted to a certain extent by rumen microbial characteristics. Collectively, these investigations offer an improved understanding of factors that influence the process of converting feed to energy sources in the ruminant animal. / Doctor of Philosophy / Ruminant animals, such as beef cattle, dairy cattle, and sheep, play a major role in delivering essential nutrients to the human population through their provision of meat and dairy products. The current growth projections of the global population, in addition to increased concerns surrounding greenhouse gas emissions and restrictions on resources such as land and water make it important for us to consider ways of optimizing the productivity of these animals. A unique feature of ruminants is their ability to conduct microbial fermentation of large amounts of plant matter in their rumens to produce energetically valuable compounds called volatile fatty acids (VFA), which are the primary source of energy that the animals use for growth, reproduction, and milk production. One promising way of improving animal productivity is to increase the amount of energy from the diet that becomes available to fuel the animal's body processes; however, the process of converting feed to VFA is complicated and currently not well understood. The overall aim of this body of work was therefore to explore various nutritional, ruminal, and microbial factors that are known to impact fermentation in order to 1) increase our understanding of how these factors interconnect and 2) put us in a better position to manipulate these factors for optimal animal performance. The goal of our first experiment was to devise and use a novel laboratory technique to rank livestock feeds based on the degradability of their starch content, which is an important substrate for VFA fermentation. Our observations indicate that this technique may be a useful tool to help us determine relative differences between feeds based on their starch degradabilities in a laboratory setting. Our second experiment investigated the effects of feeding varying sources of fiber (beet pulp and timothy hay) and protein (heat-treated and untreated soybean meals) to sheep in terms of their VFA fermentation, rumen conditions, and the expression of certain key genes in the epithelial tissue of the rumen wall. While rumen environmental characteristics and epithelial gene expression remained largely unchanged, numerous key aspects of VFA fermentation, predominantly carbon exchanges between different VFA, were altered in response to nutrient source. The third investigation described in this work examined the ability of the microbial populations responsible for rumen fermentation to explain variation in beef and dairy cow productivity compared with the ability of diet characteristics to explain this variation. Using statistical methods to analyze the reports currently available in scientific literature, our findings indicate that the rumen microbiome and diet may exert independent effects on productivity levels and that the microbiome may be used to enhance diet-based predictions of animal performance. Finally, we explored variations in the sheep rumen microbiome in response to the diet treatments utilized in Experiment 2. We observed minimal impact of protein source on the microbiome, but numerous microbial responses were evident when fiber source was varied. These responses included decreases of fiber-degrading bacterial populations and increases in pectin-degrading populations when beet pulp was fed compared to timothy hay. Taken together, these experiments help to provide us with a more comprehensive picture of the numerous factors involved in the process of converting feed to a usable form of energy for ruminant livestock.
| Identifer | oai:union.ndltd.org:VTETD/oai:vtechworks.lib.vt.edu:10919/112693 |
| Date | 02 June 2021 |
| Creators | Gleason, Claire B. |
| Contributors | Animal and Poultry Sciences, White, Robin R., Ferreira, Gonzalo, Wilson, Thomas Bain, Denbow, Donald M. |
| Publisher | Virginia Tech |
| Source Sets | Virginia Tech Theses and Dissertation |
| Detected Language | English |
| Type | Dissertation |
| Format | ETD, application/pdf, application/pdf |
| Rights | In Copyright, http://rightsstatements.org/vocab/InC/1.0/ |
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