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Maternal and Parent-of-Origin Effects on the Etiology of Orofacial Clefting

Objective: To investigate the association of previously reported single nucleotide
polymorphisms (SNPs) in relation to orofacial clefts and assess their interaction with
environmental factors.
Methods: Genome-wide SNP genotypes were obtained for case-parent triads from the
EUROCRAN and ITALCLEFT studies. Candidate SNPs were selected from a previous genome-wide association study (Shi et al., 2012) along with surrounding SNPS for a total of 2142 genotyped and imputed SNPs. A total of 411 case-parent triads and 25 case-parent dyads were analyzed using log-linear models to test for maternal and parent-of-origin effects along with their interaction with maternal smoking and maternal folic acid consumption.
Results: A significant association (q = 0.025) was detected for a region in the ATXN3 gene. This significance refers to the interaction between maternal periconceptional smoking and maternal genetic effects. Nominally significant associations in genes relating to the brain were also detected.
Conclusion: SNPs in the ATXN3 region warrant further investigation.

Identiferoai:union.ndltd.org:uottawa.ca/oai:ruor.uottawa.ca:10393/42642
Date08 September 2021
CreatorsRasevic, Nikola
ContributorsRoy-Gagnon, Marie-Hélène, Little, Julian
PublisherUniversité d'Ottawa / University of Ottawa
Source SetsUniversité d’Ottawa
LanguageEnglish
Detected LanguageEnglish
TypeThesis
Formatapplication/pdf

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