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Sparse linear algebra on a GPU : with Applications to flow in porous Media

<p>We investigate what the graphics processing units (GPUs) have to offer compared to the central processing units (CPUs) when solving a sparse linear system of equations. This is performed by using a GPU to simulate fluid-flow in a porous medium. Flow-problems are discretized mainly by the mimetic finite element discretization, but also by a two-point flux-approximation (TPFA) method. Both of these discretization schemes are explained in detail. Example-models of flow in porous media are simulated, as well as CO2 -injection into a realistic model of a sub-sea storage-cite. The linear algebra is solved by the conjugate gradient (CG) method without a preconditioner. The computationally most expensive calculation of this algorithm is the matrix-vector product. Several formats for storing sparse matrices are presented and implemented on both a CPU and a GPU. The fastest format on the CPU is different from the format performing best on the GPU. Implementations for the GPU is written for the compute unified driver architecture (CUDA), and C++ is used for the CPU-implementations. The program is created as a plug-in for Matlab and may be used to solve any symmetric positive definite (SPD) linear system. How a GPU differs from a CPU is explained, where focus is put on how a program should be written to fully utilize the potential of a GPU. The optimized implementation on the GPU outperforms the CPU, and offers a substantial improvement compared to Matlab’s conjugate gradient method, when no preconditioner is used.</p>

Identiferoai:union.ndltd.org:UPSALLA/oai:DiVA.org:ntnu-9044
Date January 2009
CreatorsTorp, Audun
PublisherNorwegian University of Science and Technology, Department of Mathematical Sciences, Institutt for matematiske fag
Source SetsDiVA Archive at Upsalla University
LanguageEnglish
Detected LanguageEnglish
TypeStudent thesis, text

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