This study provides insight into the structure/function relationship between desaturases and acetylenases, and indicates amino acid residues within acetylenases which influence
reaction outcome. <i>Oleate desaturases</i> belong to a family of enzymes capable of introducing cis
double bonds between C12 - C13 in oleate esters. Acetylenases are a subset of oleate desaturase
enzymes which introduce a triple bond in the C12 - C13 position of linoleate. To better
understand which amino acids could be responsible for differentiating the activity of
acetylenases from typical desaturases, a total of 50 protein sequences were used to compare the
two classes of enzymes resulting in the identification of 11 amino acid residues which are
conserved within either separate family but differ between the two groups of enzymes. These
identified amino acid residues were then singularly altered by site-directed mutagenesis to test their role in fatty acid modification. Specifically, the wild type acetylenase, Crep1 from <i>Crepis alpina</i>, and a number of point mutants have been expressed in <i>Saccharomyces cerevisiae</i>,
followed by fatty acid analysis of the resulting cultures. Results indicate the importance of 4
amino acid residues within Crep1 (Y150, F259, H266, and V304) with regards to desaturase
and acetylenase chemoselectivity, stereoselectivity, and/or substrate recognition. The F259L mutation affected the acetylenase by converting it to an atypical FAD2 capable of producing both cis and trans isomers. The V304I mutation resulted in the conversion of Crep1 into a stereoselective FAD2, where only the cis isomers of 16:2 and 18:2 were produced. The Y150F
mutation led to a loss of acetylenase activity without affecting the inherent desaturase activity
of Crep1. The H266Q mutation appears to affect substrate selection causing an inability to bind
substrate (16:1-9c and/or 18:1-9c) in a cisoid conformation, resulting in an increased
accumulation of trans product. The changes in enzyme activity detected in cultures expressing
Crep1 mutants demonstrate the profound effect that exchanging as little as one amino acid can
have on an enzyme properties. Enzymes retain some conservation of amino acids necessary for
activity, such as those involved in metal ion binding, whereas subtle changes can affect overall
enzyme function and catalysis.
| Identifer | oai:union.ndltd.org:USASK/oai:usask.ca:etd-12192008-101724 |
| Date | 22 December 2008 |
| Creators | Gagne, Steve Joseph |
| Contributors | Covello, Patrick, Gray, Gordon, Roesler, William, Khandelwal, Ramji, Loewen, Michele, Todd, Christopher |
| Publisher | University of Saskatchewan |
| Source Sets | University of Saskatchewan Library |
| Language | English |
| Detected Language | English |
| Type | text |
| Format | application/pdf |
| Source | http://library.usask.ca/theses/available/etd-12192008-101724/ |
| Rights | unrestricted, I hereby certify that, if appropriate, I have obtained and attached hereto a written permission statement from the owner(s) of each third party copyrighted matter to be included in my thesis, dissertation, or project report, allowing distribution as specified below. I certify that the version I submitted is the same as that approved by my advisory committee. I hereby grant to University of Saskatchewan or its agents the non-exclusive license to archive and make accessible, under the conditions specified below, my thesis, dissertation, or project report in whole or in part in all forms of media, now or hereafter known. I retain all other ownership rights to the copyright of the thesis, dissertation or project report. I also retain the right to use in future works (such as articles or books) all or part of this thesis, dissertation, or project report. |
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