The objective - To identify Zemaitukai mtDNA D-loop region and genetic relationships between Zemaitukai and some other breeds based on mtDNA sequence variation.
Methods - To perform a phylogenetic analysis of 10 Zemaitukai, mtDNA D-loop 49 horses in the 20 different horse breeds sequence were included from GenBank (http://www.ncbi.nlm.nih.gov/GenBank). DNA was extracted from hair roots using the DNEasy® Tissue Kit (Qiagen). 1,280 bp fragment of mtDNA D-loop were amplify out in PTC-100™ termocycler. Amplified products were sequenced on a LI-COR® 4200S-2 automated sequencer. Sequencher v 4.1.4. software package was used to generate the actual DNA sequence for each of the animals. Multiple alignments of sequences were performed with CLUSTAL X 1.8 (Thompson et al., 1997). The Neighbor-joining tree (Saitou and Nei, 1987) of mtDNA sequences was constructed from Jukes-Cantor distances, performed on the pairwise deletion using the MEGA software (Kumar et al., 1993).
Results –Within Zemaitukai breed 19 polymorphic sites were detected and 6 haplotypes. At the individual level 4 zemaitukai haplotypes were private to one individuals, 1 haplotype-between 2 individuals and 1 haplotype was shared between 4 individuals. On the Neighbor-joining tree showed one Zemaitukai haplotype closer genetic relationships to the Icelandic and to the Norwegian Fiord horse haplotypes. Zemaitukai breed formed a separate branch with the ancient DNA haplotype. The phylogenetic analysis reflects the presence... [to full text]
| Identifer | oai:union.ndltd.org:LABT_ETD/oai:elaba.lt:LT-eLABa-0001:E.02~2005~D_20050413_083701-74154 |
| Date | 13 April 2005 |
| Creators | Draudvilaitė, Kristina |
| Contributors | Kučinskienė, Jūratė, Jauškevičius, Algirdas, Miceikienė, Ilona, Januškevičienė, Gražina, Juozaitienė, Vida, Lithuanian Veterinary Academy |
| Publisher | Lithuanian Academic Libraries Network (LABT), Lithuanian Veterinary Academy |
| Source Sets | Lithuanian ETD submission system |
| Language | Lithuanian |
| Detected Language | English |
| Type | Master thesis |
| Format | application/pdf |
| Source | http://vddb.library.lt/obj/LT-eLABa-0001:E.02~2005~D_20050413_083701-74154 |
| Rights | Unrestricted |
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