The aim of this project is to design an algorithm that identifies the Area of Interest (AOI) in ELISpot and FluoroSpot images. ELISpot and FluoroSpot are two varieties of a biochemical test used to analyze immune responses by quantifying the amount of cytokine secreted by cells. ELISpot and FluoroSpot images show a well that contains the cytokinesecreting cells which appear as scattered spots. Prior to counting the number of spots, it is required to detect the area in which to count the spots, i.e. the area delimited by the contour of the well. We propose to use the Circle Hough Transform together with filtering and the Laplacian of Gaussian edge detector in order to accurately detect such area. Furthermore we develop an outlier removal method that contributes to increase the robustness of the proposed detection method. Finally we compare our algorithm with another algorithm already in use. A Swedish biotech company called Mabtech has implemented an AOI identifier in the same field. Our proposed algorithm proves to be more robust and provides consistent results for all the images in the dataset.
| Identifer | oai:union.ndltd.org:UPSALLA1/oai:DiVA.org:kth-254256 |
| Date | January 2019 |
| Creators | Jiménez Tauste, Albert, Rydberg, Niklas |
| Publisher | KTH, Skolan för elektroteknik och datavetenskap (EECS) |
| Source Sets | DiVA Archive at Upsalla University |
| Language | English |
| Detected Language | English |
| Type | Student thesis, info:eu-repo/semantics/bachelorThesis, text |
| Format | application/pdf |
| Rights | info:eu-repo/semantics/openAccess |
| Relation | TRITA-EECS-EX ; 2019:140 |
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