Membrane computing investigates models of computation inspired by certain features of biological cells, especially features arising because of the presence of membranes. Because of their inherent large-scale parallelism, membrane computing models (called P systems) can be fully exploited only through the use of a parallel computing platform. However, it is an open question whether it is feasible to develop an efficient and useful parallel computing platform for membrane computing applications. Such a computing platform would significantly outperform equivalent sequential computing platforms while still achieving acceptable scalability, flexibility and extensibility. To move closer to an answer to this question, I have investigated a novel approach to the development of a parallel computing platform for membrane computing applications that has the potential to deliver a good balance between performance, flexibility, scalability and extensibility. This approach involves the use of reconfigurable hardware and an intelligent software component that is able to configure the hardware to suit the specific properties of the P system to be executed. As part of my investigations, I have created a prototype computing platform called Reconfig-P based on the proposed development approach. Reconfig-P is the only existing computing platform for membrane computing applications able to support both system-level and region-level parallelism. Using an intelligent hardware source code generator called P Builder, Reconfig-P is able to realise an input P system as a hardware circuit in various ways, depending on which aspects of P systems the user wishes to emphasise at the implementation level. For example, Reconfig-P can realise a P system in a rule-oriented manner or in a region-oriented manner. P Builder provides a unified implementation framework within which the various implementation strategies can be supported. The basic principles of this framework conform to a novel design pattern called Content-Form-Strategy. The framework seamlessly integrates the currently supported implementation approaches, and facilitates the inclusion of additional implementation strategies and additional P system features. Theoretical and empirical results regarding the execution time performance and hardware resource consumption of Reconfig-P suggest that the proposed development approach is a viable means of attaining a good balance between performance, scalability, flexibility and extensibility. Most of the existing computing platforms for membrane computing applications fail to support nondeterministic object distribution, a key aspect of P systems that presents several interesting implementation challenges. I have devised an efficient algorithm for nondeterministic object distribution that is suitable for implementation in hardware. Experimental results suggest that this algorithm could be incorporated into Reconfig-P without too significantly reducing its performance or efficiency. / Thesis (PhDInformationTechnology)--University of South Australia, 2010
| Identifer | oai:union.ndltd.org:ADTP/288224 |
| Date | January 2010 |
| Creators | Nguyen, Van-Tuong |
| Source Sets | Australiasian Digital Theses Program |
| Language | EN-AUS |
| Detected Language | English |
| Rights | Copyright 2010 Van Nguyen |
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