Six new structural parameters £rB, £pB, £rC, £pC, £rS, and £pS are proposed to enhance the side chain actions in protein structures. Programs for calculating these new parameters based on phi and psi torsion angles vector algebra calculation method are established. A bivariate model with von Mises marginal distributions are applied to establish models of phi and psi in protein class Ophiophagus hannah neurotoxins and alpha-bungarotoxins respectively. 11 global structural parameters include phi and psi torsion angles, bond lengths of C-N, C-O, C£\ -C, and N-C£\, and bond angles of C-N-C£\, C£\-C-N, C£\-C-O, N-C£\-C, and O-C-N are considered to classify long alpha-neurotoxins by Ward's cluster method and LIBSVM program package. Those global structural parameters of loop II Trp residues of alpha-neurotoxins are discussed.
| Identifer | oai:union.ndltd.org:NSYSU/oai:NSYSU:etd-0716102-172715 |
| Date | 16 July 2002 |
| Creators | Feng, Wen-Ying |
| Contributors | Grace Shwu-Rong Shieh, Mei-Hui Guo, Rong-I Hong, Shangwu (Sam) Ding, L.S. Chang |
| Publisher | NSYSU |
| Source Sets | NSYSU Electronic Thesis and Dissertation Archive |
| Language | English |
| Detected Language | English |
| Type | text |
| Format | application/pdf |
| Source | http://etd.lib.nsysu.edu.tw/ETD-db/ETD-search/view_etd?URN=etd-0716102-172715 |
| Rights | unrestricted, Copyright information available at source archive |
Page generated in 0.0018 seconds